Wall clock time and date at job start Sat Apr 11 2020 00:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32470 * 125.18414 * 2 1 4 4 C 1.32935 * 109.67426 * 179.76663 * 3 2 1 5 5 C 1.40676 * 132.77508 * 179.53052 * 4 3 2 6 6 C 1.36090 * 119.38154 * 180.44931 * 5 4 3 7 7 C 1.40768 * 119.57555 * 0.28094 * 6 5 4 8 8 N 1.40145 * 119.96837 * 179.97438 * 7 6 5 9 9 C 1.34780 * 120.00198 * 34.11083 * 8 7 6 10 10 O 1.21569 * 119.99778 * 5.12578 * 9 8 7 11 11 C 1.47857 * 120.00053 * 185.12709 * 9 8 7 12 12 C 1.39929 * 120.02559 * 359.72428 * 11 9 8 13 13 C 1.38333 * 120.35428 * 179.76200 * 12 11 9 14 14 C 1.37751 * 120.41393 * 0.51558 * 13 12 11 15 15 C 1.40757 * 120.04172 * 359.74276 * 14 13 12 16 16 C 1.41439 * 120.17630 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00018 * 25.12602 * 16 15 14 18 18 C 1.39935 * 119.99772 * 205.12089 * 16 15 14 19 19 N 1.30824 * 119.99965 * 16.80924 * 18 16 15 20 20 Si 1.86802 * 119.99922 * 196.80804 * 18 16 15 21 21 H 1.48497 * 109.46882 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47077 * 120.00280 * 20 18 16 23 23 H 1.48506 * 109.46866 * 239.99963 * 20 18 16 24 24 C 1.39008 * 120.02341 * 179.97438 * 11 9 8 25 25 C 1.35790 * 120.06730 * 359.97219 * 7 6 5 26 26 N 1.36049 * 120.47261 * 0.02859 * 25 7 6 27 27 N 1.31290 * 125.18189 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46836 * 269.96089 * 1 2 3 29 29 H 1.08999 * 109.47168 * 29.95845 * 1 2 3 30 30 H 1.08997 * 109.47254 * 149.95965 * 1 2 3 31 31 H 1.08005 * 120.31549 * 0.73145 * 5 4 3 32 32 H 1.07998 * 120.21614 * 180.29685 * 6 5 4 33 33 H 0.97000 * 120.00317 * 214.11518 * 8 7 6 34 34 H 1.07999 * 119.82393 * 0.02562 * 12 11 9 35 35 H 1.07998 * 119.79518 * 180.25427 * 13 12 11 36 36 H 1.07997 * 119.98174 * 179.76131 * 14 13 12 37 37 H 0.97005 * 120.00074 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.20389 * 359.95687 * 24 11 9 39 39 H 1.07994 * 119.76649 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2703 1.0827 0.0000 4 6 3.5512 0.7272 0.0051 5 6 4.7479 1.4667 -0.0011 6 6 5.9393 0.8089 -0.0023 7 6 5.9558 -0.5987 -0.0033 8 7 7.1779 -1.2845 -0.0051 9 6 8.2393 -0.7720 0.6487 10 8 8.1130 0.2359 1.3166 11 6 9.5572 -1.4355 0.5535 12 6 9.7018 -2.5988 -0.2106 13 6 10.9328 -3.2224 -0.3083 14 6 12.0277 -2.7118 0.3535 15 6 11.9003 -1.5455 1.1312 16 6 13.0228 -1.0185 1.8115 17 1 14.0192 -1.2240 1.4493 18 6 12.8421 -0.2307 2.9538 19 7 11.6956 -0.2452 3.5838 20 14 14.2380 0.8415 3.5792 21 1 15.4204 0.6800 2.6954 22 1 13.8094 2.2633 3.5768 23 1 14.5937 0.4341 4.9623 24 6 10.6522 -0.9070 1.2272 25 6 4.7886 -1.2927 -0.0026 26 7 3.5963 -0.6375 -0.0014 27 7 2.2635 -1.0731 -0.0005 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8896 -0.5144 31 1 4.7216 2.5464 -0.0003 32 1 6.8662 1.3631 -0.0022 33 1 7.2601 -2.1280 -0.4770 34 1 8.8489 -3.0097 -0.7302 35 1 11.0351 -4.1175 -0.9039 36 1 12.9845 -3.2065 0.2754 37 1 11.5705 0.3006 4.3759 38 1 10.5445 -0.0112 1.8207 39 1 4.8069 -2.3725 -0.0038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355388636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:20 Heat of formation + Delta-G solvation = 105.596901 kcal Electronic energy + Delta-G solvation = -25052.558379 eV Core-core repulsion = 21348.104298 eV Total energy + Delta-G solvation = -3704.454081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.74068 -40.18342 -38.04023 -37.03814 -34.64434 -33.85812 -33.63997 -31.63933 -30.40375 -29.69967 -29.61826 -27.93050 -25.47493 -24.08913 -23.70839 -22.32056 -21.16716 -20.92884 -20.01238 -18.26787 -18.09366 -17.26349 -16.76717 -16.37857 -15.92013 -15.36219 -15.03589 -14.84051 -14.62132 -14.24058 -13.85122 -13.65123 -13.39417 -13.37370 -13.17449 -12.87117 -12.69693 -12.51988 -12.09390 -11.79158 -11.50771 -11.31133 -11.27227 -11.20782 -10.89491 -10.62385 -10.28982 -10.23471 -10.16193 -9.86345 -9.42801 -9.35929 -8.97743 -8.07810 -7.81110 -7.68793 -6.93524 -4.56085 0.53937 0.83131 1.86262 1.93159 2.54579 2.66651 3.00328 3.02830 3.05942 3.18722 3.26109 3.61516 3.79326 3.81949 4.00427 4.45244 4.48603 4.69485 4.82039 5.04342 5.27133 5.29797 5.42307 5.43819 5.52425 5.72404 5.76857 5.92210 6.01007 6.08444 6.19458 6.31574 6.42854 6.54752 6.69380 6.79998 6.83287 7.05311 7.19034 7.37887 7.53127 7.66334 7.80855 7.89434 8.00027 8.33914 8.43801 8.65556 8.67409 10.00996 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.002620 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.195085 B =10684.673130 C =11612.568192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.248 3.752 3 N -0.547 5.547 4 C 0.272 3.728 5 C -0.094 4.094 6 C -0.051 4.051 7 C 0.144 3.856 8 N -0.670 5.670 9 C 0.570 3.430 10 O -0.520 6.520 11 C -0.131 4.131 12 C -0.220 4.220 13 C -0.095 4.095 14 C -0.207 4.207 15 C 0.098 3.902 16 C -0.456 4.456 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.783 5.783 20 Si 0.911 3.089 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.273 1.273 24 C -0.086 4.086 25 C 0.057 3.943 26 N -0.268 5.268 27 N -0.345 5.345 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.415 0.585 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.286 0.714 38 H 0.136 0.864 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 -0.101 -6.558 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.031 4.031 3 N -0.279 5.279 4 C 0.019 3.981 5 C -0.116 4.116 6 C -0.078 4.078 7 C 0.044 3.956 8 N -0.318 5.318 9 C 0.363 3.637 10 O -0.396 6.396 11 C -0.134 4.134 12 C -0.240 4.240 13 C -0.113 4.113 14 C -0.227 4.227 15 C 0.095 3.905 16 C -0.484 4.484 17 H 0.101 0.899 18 C -0.147 4.147 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.106 4.106 25 C -0.075 4.075 26 N -0.041 5.041 27 N -0.179 5.179 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.179 0.821 32 H 0.182 0.818 33 H 0.254 0.746 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.154 0.846 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.042 0.323 -5.855 14.299 hybrid contribution 0.885 -0.177 0.200 0.925 sum -12.156 0.145 -5.655 13.408 Atomic orbital electron populations 1.20143 0.83436 1.04189 1.03977 1.24412 0.98402 0.85566 0.94755 1.70768 0.98131 1.29267 1.29718 1.21781 0.94491 0.82565 0.99271 1.20206 0.86827 1.01132 1.03455 1.21465 0.99636 0.92625 0.94051 1.16993 0.85411 0.91652 1.01497 1.43591 1.07637 1.26229 1.54387 1.19097 0.84046 0.83773 0.76800 1.90738 1.84655 1.25193 1.38983 1.19255 0.91271 0.98432 1.04434 1.20314 0.97009 0.99405 1.07256 1.20448 0.93168 0.98464 0.99224 1.21151 0.97569 0.98190 1.05823 1.17613 0.92673 0.89743 0.90475 1.19653 0.94291 1.26413 1.08076 0.89859 1.25987 0.96988 0.95665 0.96076 1.69770 1.24485 1.31615 1.14816 0.86203 0.81305 0.79927 0.79052 1.18268 1.19464 1.19827 1.21667 0.91180 1.00126 0.97628 1.20780 0.80519 0.99207 1.06992 1.47206 1.05612 1.06958 1.44310 1.78493 0.83244 1.21140 1.34993 0.89543 0.89300 0.89818 0.82063 0.81826 0.74602 0.89141 0.88650 0.88398 0.90321 0.84602 0.81069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 36.01 0.38 -0.12 16 2 C 0.25 3.42 8.09 -157.04 -1.27 2.15 16 3 N -0.55 -8.35 11.25 -10.15 -0.11 -8.46 16 4 C 0.27 4.06 7.88 -156.31 -1.23 2.83 16 5 C -0.09 -1.21 10.10 -39.43 -0.40 -1.61 16 6 C -0.05 -0.69 8.65 -39.40 -0.34 -1.03 16 7 C 0.14 1.96 6.22 -83.98 -0.52 1.44 16 8 N -0.67 -9.49 5.28 -10.90 -0.06 -9.55 16 9 C 0.57 10.74 7.52 -12.32 -0.09 10.65 16 10 O -0.52 -11.17 14.07 5.30 0.07 -11.10 16 11 C -0.13 -2.74 5.87 -105.04 -0.62 -3.35 16 12 C -0.22 -4.09 9.55 -38.91 -0.37 -4.46 16 13 C -0.09 -1.83 10.01 -39.72 -0.40 -2.23 16 14 C -0.21 -4.55 9.78 -38.81 -0.38 -4.93 16 15 C 0.10 2.40 5.57 -106.87 -0.59 1.80 16 16 C -0.46 -11.24 9.05 -37.73 -0.34 -11.58 16 17 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 18 C 0.07 1.72 5.16 -17.35 -0.09 1.63 16 19 N -0.78 -19.55 10.94 55.55 0.61 -18.94 16 20 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 24 C -0.09 -2.09 8.23 -38.44 -0.32 -2.41 16 25 C 0.06 0.73 11.10 -16.56 -0.18 0.54 16 26 N -0.27 -3.96 3.90 -12.17 -0.05 -4.01 16 27 N -0.35 -5.18 12.78 32.38 0.41 -4.77 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.16 2.32 6.52 -52.49 -0.34 1.98 16 33 H 0.42 4.73 6.85 -40.82 -0.28 4.45 16 34 H 0.09 1.32 6.39 -52.49 -0.34 0.98 16 35 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 38 H 0.14 3.59 5.75 -52.49 -0.30 3.29 16 39 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -30.00 340.77 -9.55 -39.56 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.77 Total: 10.04 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -6.77 Total: -10.68 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.80 Total: -45.73 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.00 -9.55 -39.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355388636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.155 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds