Wall clock time and date at job start Sat Apr 11 2020 00:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32470 * 125.18414 * 2 1 4 4 C 1.32935 * 109.67426 * 179.76663 * 3 2 1 5 5 C 1.40676 * 132.77508 * 179.53052 * 4 3 2 6 6 C 1.36090 * 119.38154 * 180.44931 * 5 4 3 7 7 C 1.40768 * 119.57555 * 0.28094 * 6 5 4 8 8 N 1.40145 * 119.96837 * 179.97438 * 7 6 5 9 9 C 1.34780 * 120.00198 * 34.11083 * 8 7 6 10 10 O 1.21569 * 119.99778 * 5.12578 * 9 8 7 11 11 C 1.47857 * 120.00053 * 185.12709 * 9 8 7 12 12 C 1.39929 * 120.02559 * 359.72428 * 11 9 8 13 13 C 1.38333 * 120.35428 * 179.76200 * 12 11 9 14 14 C 1.37751 * 120.41393 * 0.51558 * 13 12 11 15 15 C 1.40757 * 120.04172 * 359.74276 * 14 13 12 16 16 C 1.41439 * 120.17630 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00018 * 25.12602 * 16 15 14 18 18 C 1.39935 * 119.99772 * 205.12089 * 16 15 14 19 19 N 1.30824 * 119.99965 * 16.80924 * 18 16 15 20 20 Si 1.86802 * 119.99922 * 196.80804 * 18 16 15 21 21 H 1.48497 * 109.46882 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47077 * 120.00280 * 20 18 16 23 23 H 1.48506 * 109.46866 * 239.99963 * 20 18 16 24 24 C 1.39008 * 120.02341 * 179.97438 * 11 9 8 25 25 C 1.35790 * 120.06730 * 359.97219 * 7 6 5 26 26 N 1.36049 * 120.47261 * 0.02859 * 25 7 6 27 27 N 1.31290 * 125.18189 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46836 * 269.96089 * 1 2 3 29 29 H 1.08999 * 109.47168 * 29.95845 * 1 2 3 30 30 H 1.08997 * 109.47254 * 149.95965 * 1 2 3 31 31 H 1.08005 * 120.31549 * 0.73145 * 5 4 3 32 32 H 1.07998 * 120.21614 * 180.29685 * 6 5 4 33 33 H 0.97000 * 120.00317 * 214.11518 * 8 7 6 34 34 H 1.07999 * 119.82393 * 0.02562 * 12 11 9 35 35 H 1.07998 * 119.79518 * 180.25427 * 13 12 11 36 36 H 1.07997 * 119.98174 * 179.76131 * 14 13 12 37 37 H 0.97005 * 120.00074 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.20389 * 359.95687 * 24 11 9 39 39 H 1.07994 * 119.76649 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2703 1.0827 0.0000 4 6 3.5512 0.7272 0.0051 5 6 4.7479 1.4667 -0.0011 6 6 5.9393 0.8089 -0.0023 7 6 5.9558 -0.5987 -0.0033 8 7 7.1779 -1.2845 -0.0051 9 6 8.2393 -0.7720 0.6487 10 8 8.1130 0.2359 1.3166 11 6 9.5572 -1.4355 0.5535 12 6 9.7018 -2.5988 -0.2106 13 6 10.9328 -3.2224 -0.3083 14 6 12.0277 -2.7118 0.3535 15 6 11.9003 -1.5455 1.1312 16 6 13.0228 -1.0185 1.8115 17 1 14.0192 -1.2240 1.4493 18 6 12.8421 -0.2307 2.9538 19 7 11.6956 -0.2452 3.5838 20 14 14.2380 0.8415 3.5792 21 1 15.4204 0.6800 2.6954 22 1 13.8094 2.2633 3.5768 23 1 14.5937 0.4341 4.9623 24 6 10.6522 -0.9070 1.2272 25 6 4.7886 -1.2927 -0.0026 26 7 3.5963 -0.6375 -0.0014 27 7 2.2635 -1.0731 -0.0005 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8896 -0.5144 31 1 4.7216 2.5464 -0.0003 32 1 6.8662 1.3631 -0.0022 33 1 7.2601 -2.1280 -0.4770 34 1 8.8489 -3.0097 -0.7302 35 1 11.0351 -4.1175 -0.9039 36 1 12.9845 -3.2065 0.2754 37 1 11.5705 0.3006 4.3759 38 1 10.5445 -0.0112 1.8207 39 1 4.8069 -2.3725 -0.0038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355388636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:19 Heat of formation + Delta-G solvation = 89.174605 kcal Electronic energy + Delta-G solvation = -25053.270504 eV Core-core repulsion = 21348.104298 eV Total energy + Delta-G solvation = -3705.166205 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.81507 -41.54849 -39.40790 -38.52207 -35.97711 -35.50172 -34.72576 -32.77504 -31.85863 -31.28967 -30.76128 -28.98061 -27.19804 -25.26312 -24.94034 -23.61279 -22.80266 -22.02094 -21.44183 -19.76821 -19.27353 -18.63229 -17.93061 -17.53567 -17.31410 -16.97413 -16.45875 -16.21147 -15.85901 -15.67628 -15.09771 -14.88160 -14.56635 -14.50211 -14.37963 -14.30442 -14.08266 -13.50258 -13.27042 -13.11475 -12.95193 -12.80115 -12.55008 -12.53753 -12.36128 -12.18534 -11.92419 -11.51552 -11.43438 -11.26822 -11.09290 -10.95985 -10.11875 -9.55607 -9.39177 -9.10801 -8.66674 -6.38325 -0.50546 -0.30297 0.33147 0.80999 1.00150 1.38201 1.44306 1.50101 1.53172 1.94833 1.98034 2.19238 2.29626 2.76691 2.80240 3.01972 3.42711 3.67509 3.70008 3.73326 4.01236 4.15868 4.41873 4.48277 4.57655 4.69671 4.71631 4.78696 4.86075 4.90181 4.97516 5.08151 5.13285 5.17369 5.26421 5.31570 5.40625 5.50023 5.62131 5.81730 5.90510 6.04716 6.24124 6.33596 6.59725 6.82468 6.88314 6.92916 7.03230 8.29747 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.002620 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.195085 B =10684.673130 C =11612.568192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.244 3.756 3 N -0.568 5.568 4 C 0.257 3.743 5 C -0.089 4.089 6 C -0.057 4.057 7 C 0.131 3.869 8 N -0.646 5.646 9 C 0.573 3.427 10 O -0.554 6.554 11 C -0.137 4.137 12 C -0.193 4.193 13 C -0.097 4.097 14 C -0.213 4.213 15 C 0.065 3.935 16 C -0.495 4.495 17 H 0.082 0.918 18 C 0.031 3.969 19 N -0.824 5.824 20 Si 0.979 3.021 21 H -0.253 1.253 22 H -0.270 1.270 23 H -0.267 1.267 24 C -0.123 4.123 25 C 0.072 3.928 26 N -0.278 5.278 27 N -0.365 5.365 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.182 0.818 32 H 0.155 0.845 33 H 0.431 0.569 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.286 0.714 38 H 0.104 0.896 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.006 -1.646 -8.130 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.036 4.036 3 N -0.300 5.300 4 C 0.004 3.996 5 C -0.111 4.111 6 C -0.084 4.084 7 C 0.032 3.968 8 N -0.295 5.295 9 C 0.365 3.635 10 O -0.432 6.432 11 C -0.140 4.140 12 C -0.213 4.213 13 C -0.114 4.114 14 C -0.232 4.232 15 C 0.063 3.937 16 C -0.524 4.524 17 H 0.100 0.900 18 C -0.184 4.184 19 N -0.450 5.450 20 Si 0.800 3.200 21 H -0.176 1.176 22 H -0.195 1.195 23 H -0.192 1.192 24 C -0.144 4.144 25 C -0.059 4.059 26 N -0.051 5.051 27 N -0.198 5.198 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.200 0.800 32 H 0.172 0.828 33 H 0.273 0.727 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.122 0.878 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.732 -1.263 -7.467 16.565 hybrid contribution 1.176 0.172 0.518 1.296 sum -13.557 -1.091 -6.949 15.273 Atomic orbital electron populations 1.20388 0.80201 1.05649 1.05369 1.25350 1.00251 0.84779 0.93176 1.70793 0.98487 1.30155 1.30588 1.22118 0.95009 0.83044 0.99398 1.20388 0.85952 1.02105 1.02665 1.21437 0.99529 0.92980 0.94418 1.16958 0.85279 0.91620 1.02972 1.43113 1.06728 1.26410 1.53280 1.18787 0.84447 0.83317 0.76954 1.90730 1.85164 1.26685 1.40629 1.19518 0.91460 0.99187 1.03867 1.20909 0.98576 0.97183 1.04607 1.20939 0.92323 0.99551 0.98625 1.21451 0.99181 0.97396 1.05222 1.17944 0.92991 0.91108 0.91690 1.19874 0.94476 1.28733 1.09344 0.89961 1.26773 0.99214 0.96424 0.95945 1.69861 1.26509 1.33057 1.15590 0.85198 0.78383 0.77844 0.78596 1.17599 1.19471 1.19152 1.21473 0.92791 1.00291 0.99836 1.21105 0.79623 1.00441 1.04723 1.47382 1.06096 1.07117 1.44525 1.78456 0.83330 1.21960 1.36075 0.88018 0.88007 0.88164 0.80050 0.82759 0.72698 0.83934 0.84321 0.87520 0.90302 0.87841 0.78125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.51 71.24 0.75 -0.09 16 2 C 0.24 6.28 8.09 138.70 1.12 7.40 16 3 N -0.57 -16.63 11.25 -186.02 -2.09 -18.72 16 4 C 0.26 7.38 7.88 134.10 1.06 8.44 16 5 C -0.09 -2.23 10.10 22.37 0.23 -2.00 16 6 C -0.06 -1.51 8.65 22.39 0.19 -1.31 16 7 C 0.13 3.32 6.22 37.86 0.24 3.56 16 8 N -0.65 -16.75 5.28 -306.66 -1.62 -18.37 16 9 C 0.57 21.28 7.52 86.79 0.65 21.93 16 10 O -0.55 -24.44 14.07 -3.93 -0.06 -24.49 16 11 C -0.14 -5.67 5.87 -20.14 -0.12 -5.79 16 12 C -0.19 -6.51 9.55 22.70 0.22 -6.29 16 13 C -0.10 -3.41 10.01 22.18 0.22 -3.19 16 14 C -0.21 -9.20 9.78 22.77 0.22 -8.97 16 15 C 0.06 3.30 5.57 -21.32 -0.12 3.18 16 16 C -0.49 -25.64 9.05 23.47 0.21 -25.43 16 17 H 0.08 4.06 7.90 -2.91 -0.02 4.03 16 18 C 0.03 1.57 5.16 85.25 0.44 2.01 16 19 N -0.82 -43.77 10.94 21.82 0.24 -43.53 16 20 Si 0.98 38.09 29.59 68.60 2.03 40.12 16 21 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 24 C -0.12 -6.27 8.23 23.01 0.19 -6.08 16 25 C 0.07 1.68 11.10 83.47 0.93 2.60 16 26 N -0.28 -7.74 3.90 -192.41 -0.75 -8.49 16 27 N -0.36 -10.28 12.78 -51.47 -0.66 -10.94 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 32 H 0.15 4.45 6.52 -2.91 -0.02 4.44 16 33 H 0.43 8.01 6.85 -92.71 -0.63 7.37 16 34 H 0.14 3.29 6.39 -2.91 -0.02 3.27 16 35 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.29 14.03 8.30 -92.70 -0.77 13.26 16 38 H 0.10 5.88 5.75 -2.91 -0.02 5.87 16 39 H 0.20 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -69.47 340.77 4.01 -65.47 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.49 Total: 29.00 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 6.43 Total: -10.04 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -4.88 Total: -100.05 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.06 Total: -24.49 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -69.47 4.01 -65.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355388636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.642 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds