Wall clock time and date at job start Sat Apr 11 2020 00:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50700 * 109.47587 * 2 1 4 4 C 1.38130 * 119.54441 * 125.27948 * 3 2 1 5 5 C 1.39828 * 119.03032 * 180.27643 * 4 3 2 6 6 C 1.48154 * 120.91689 * 179.72985 * 5 4 3 7 7 O 1.21521 * 119.99720 * 49.64980 * 6 5 4 8 8 N 1.34774 * 120.00046 * 229.65641 * 6 5 4 9 9 C 1.46923 * 120.63146 * 356.18566 * 8 6 5 10 10 C 1.53202 * 108.77412 * 126.43884 * 9 8 6 11 11 C 1.53041 * 109.30949 * 54.63595 * 10 9 8 12 12 C 1.53034 * 109.53923 * 298.63243 * 11 10 9 13 13 H 1.09001 * 109.50190 * 301.38714 * 12 11 10 14 14 C 1.50703 * 109.49972 * 181.31736 * 12 11 10 15 15 H 1.07998 * 119.99544 * 0.07375 * 14 12 11 16 16 C 1.37876 * 120.00313 * 180.34113 * 14 12 11 17 17 N 1.31506 * 120.00204 * 179.72852 * 16 14 12 18 18 Si 1.86802 * 119.99909 * 359.72702 * 16 14 12 19 19 H 1.48499 * 109.47153 * 89.99943 * 18 16 14 20 20 H 1.48498 * 109.47369 * 210.00126 * 18 16 14 21 21 H 1.48504 * 109.47198 * 330.00218 * 18 16 14 22 22 C 1.46938 * 120.60280 * 176.21643 * 8 6 5 23 23 C 1.39782 * 118.17187 * 359.45592 * 5 4 3 24 24 C 1.38302 * 118.98811 * 0.28010 * 23 5 4 25 25 Cl 1.73605 * 119.56946 * 179.97438 * 24 23 5 26 26 N 1.31820 * 119.53886 * 305.00308 * 3 2 1 27 27 H 1.08999 * 109.47109 * 60.00028 * 1 2 3 28 28 H 1.09006 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47383 * 299.99943 * 1 2 3 30 30 H 1.09004 * 109.47383 * 240.00057 * 2 1 3 31 31 H 1.08998 * 109.47556 * 120.00599 * 2 1 3 32 32 H 1.07998 * 120.48478 * 0.02825 * 4 3 2 33 33 H 1.08995 * 109.58929 * 6.65633 * 9 8 6 34 34 H 1.09000 * 109.58992 * 246.22140 * 9 8 6 35 35 H 1.09001 * 109.49747 * 294.68816 * 10 9 8 36 36 H 1.08997 * 109.52321 * 174.60496 * 10 9 8 37 37 H 1.09000 * 109.45386 * 178.61764 * 11 10 9 38 38 H 1.08997 * 109.44814 * 58.65143 * 11 10 9 39 39 H 0.97000 * 120.00570 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.56258 * 113.76001 * 22 8 6 41 41 H 1.09000 * 109.61433 * 353.32904 * 22 8 6 42 42 H 1.07995 * 120.50797 * 180.24631 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9138 1.8315 0.9810 5 6 3.3686 3.1537 0.9742 6 6 4.3097 3.6403 2.0097 7 8 5.3160 3.0074 2.2618 8 7 4.0498 4.7849 2.6723 9 6 2.8816 5.6040 2.3216 10 6 2.0555 5.8523 3.5877 11 6 2.9527 6.4656 4.6652 12 6 4.0808 5.4900 5.0081 13 1 3.6548 4.5486 5.3553 14 6 4.9449 6.0811 6.0921 15 1 4.7123 7.0548 6.4972 16 6 6.0356 5.3812 6.5628 17 7 6.7928 5.8994 7.5050 18 14 6.4379 3.6969 5.8622 19 1 7.3498 3.8491 4.7002 20 1 7.0985 2.8718 6.9052 21 1 5.1849 3.0309 5.4242 22 6 4.9301 5.2369 3.7585 23 6 2.9154 4.0023 -0.0400 24 6 2.0371 3.5063 -0.9863 25 17 1.4642 4.5472 -2.2521 26 7 1.6288 2.2528 -0.9394 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.2437 1.1426 1.7445 33 1 2.2735 5.0775 1.5861 34 1 3.2138 6.5569 1.9095 35 1 1.6486 4.9073 3.9477 36 1 1.2386 6.5374 3.3612 37 1 2.3618 6.6659 5.5589 38 1 3.3789 7.3980 4.2951 39 1 7.5604 5.4072 7.8359 40 1 5.4298 6.1595 3.4633 41 1 5.6731 4.4683 3.9711 42 1 3.2456 5.0296 -0.0837 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397711934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:25 Heat of formation + Delta-G solvation = -9.680565 kcal Electronic energy + Delta-G solvation = -25277.906755 eV Core-core repulsion = 21669.561362 eV Total energy + Delta-G solvation = -3608.345393 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10393 -39.52612 -37.19286 -36.96894 -34.69268 -33.58201 -32.68887 -32.00604 -30.67290 -30.09755 -26.21869 -25.36319 -24.67364 -23.67373 -22.38416 -22.04546 -19.98995 -18.93425 -17.79040 -16.95492 -16.71179 -16.45636 -16.12194 -15.41967 -15.27948 -14.65353 -14.47314 -14.23770 -14.15387 -13.94716 -13.71781 -13.12421 -13.01077 -12.83510 -12.59324 -12.43372 -12.29555 -11.84416 -11.73562 -11.63417 -11.49060 -11.29697 -11.17286 -10.72337 -10.53455 -10.36235 -10.20960 -10.09604 -9.85954 -9.66252 -9.32568 -9.20008 -9.12546 -8.68234 -8.26911 -6.17180 -4.19200 0.51262 0.55173 1.44699 2.65678 3.03280 3.30801 3.32734 3.39887 3.47528 3.89337 4.18213 4.34855 4.48045 4.55778 4.72260 4.88185 4.97792 4.99436 5.05377 5.14400 5.21435 5.31054 5.36958 5.42176 5.59047 5.66314 5.70005 5.77628 5.89788 5.94510 5.99065 6.04908 6.09416 6.29093 6.39879 6.51910 6.62954 6.68693 7.04475 7.32697 7.34968 7.58491 7.62982 8.19787 8.41767 8.86142 9.43880 10.94849 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.003912 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.485342 B = 7156.563236 C = 7933.020039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C 0.151 3.849 4 C -0.122 4.122 5 C -0.051 4.051 6 C 0.549 3.451 7 O -0.528 6.528 8 N -0.593 5.593 9 C 0.096 3.904 10 C -0.136 4.136 11 C -0.101 4.101 12 C 0.005 3.995 13 H 0.031 0.969 14 C -0.517 4.517 15 H 0.079 0.921 16 C 0.074 3.926 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.272 1.272 20 H -0.294 1.294 21 H -0.265 1.265 22 C 0.101 3.899 23 C -0.136 4.136 24 C 0.178 3.822 25 Cl -0.027 7.027 26 N -0.467 5.467 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.266 0.734 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 -6.343 -17.461 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C 0.013 3.987 4 C -0.143 4.143 5 C -0.062 4.062 6 C 0.334 3.666 7 O -0.405 6.405 8 N -0.325 5.325 9 C -0.026 4.026 10 C -0.175 4.175 11 C -0.138 4.138 12 C -0.015 4.015 13 H 0.049 0.951 14 C -0.555 4.555 15 H 0.097 0.903 16 C -0.129 4.129 17 N -0.531 5.531 18 Si 0.707 3.293 19 H -0.198 1.198 20 H -0.221 1.221 21 H -0.190 1.190 22 C -0.019 4.019 23 C -0.157 4.157 24 C 0.014 3.986 25 Cl 0.002 6.998 26 N -0.179 5.179 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.168 0.832 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.113 -6.867 -17.923 23.246 hybrid contribution 0.921 -0.371 0.140 1.003 sum -12.193 -7.238 -17.784 22.744 Atomic orbital electron populations 1.21688 0.93687 1.02023 1.02845 1.20549 0.97352 0.89317 1.03840 1.21136 0.92631 0.95935 0.89012 1.22166 0.96894 0.95173 1.00039 1.20458 0.96007 0.94277 0.95496 1.18153 0.85447 0.81495 0.81469 1.90822 1.27061 1.56802 1.65857 1.48420 1.27433 1.21511 1.35095 1.22074 0.87061 0.95406 0.98102 1.21992 0.98144 1.01442 0.95876 1.21450 0.96658 0.98837 0.96903 1.19498 0.93646 0.96193 0.92120 0.95099 1.20940 1.10575 1.05788 1.18237 0.90323 1.25037 0.95830 0.97525 0.94482 1.69876 1.16857 1.38363 1.27985 0.87024 0.79608 0.84703 0.78000 1.19809 1.22085 1.19002 1.22768 0.93378 0.99670 0.86039 1.22021 0.97825 1.01698 0.94156 1.21414 0.95544 0.90200 0.91467 1.98416 1.88263 1.62785 1.50353 1.66611 1.24480 1.02394 1.24375 0.91481 0.92032 0.92677 0.89433 0.89624 0.83197 0.90191 0.90793 0.91990 0.91339 0.91997 0.92326 0.92405 0.90937 0.90174 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.77 37.15 0.36 -0.74 16 2 C -0.07 -0.59 6.33 -27.89 -0.18 -0.77 16 3 C 0.15 1.68 6.18 -82.64 -0.51 1.17 16 4 C -0.12 -1.53 9.45 -39.03 -0.37 -1.90 16 5 C -0.05 -0.72 5.05 -104.65 -0.53 -1.25 16 6 C 0.55 9.92 7.31 -12.19 -0.09 9.83 16 7 O -0.53 -11.65 16.48 5.35 0.09 -11.56 16 8 N -0.59 -10.54 2.97 -173.75 -0.52 -11.05 16 9 C 0.10 1.30 5.41 -3.71 -0.02 1.28 16 10 C -0.14 -1.92 6.08 -26.61 -0.16 -2.08 16 11 C -0.10 -1.80 5.11 -26.69 -0.14 -1.94 16 12 C 0.00 0.11 1.84 -91.65 -0.17 -0.06 16 13 H 0.03 0.74 7.21 -51.93 -0.37 0.36 16 14 C -0.52 -13.94 9.15 -34.44 -0.32 -14.25 16 15 H 0.08 2.26 7.99 -52.49 -0.42 1.85 16 16 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 17 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 18 Si 0.88 22.59 24.32 -169.99 -4.13 18.45 16 19 H -0.27 -7.07 6.91 56.52 0.39 -6.68 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 21 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 22 C 0.10 2.18 5.10 -3.70 -0.02 2.16 16 23 C -0.14 -1.62 7.24 -38.98 -0.28 -1.90 16 24 C 0.18 2.08 7.27 -17.49 -0.13 1.95 16 25 Cl -0.03 -0.27 29.10 -51.86 -1.51 -1.78 16 26 N -0.47 -5.61 9.83 -6.66 -0.07 -5.67 16 27 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.58 7.87 -51.93 -0.41 0.17 16 32 H 0.15 1.77 7.95 -52.49 -0.42 1.35 16 33 H 0.08 0.92 4.51 -51.93 -0.23 0.69 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.08 1.95 2.33 -51.93 -0.12 1.83 16 42 H 0.15 1.58 7.07 -52.49 -0.37 1.21 16 LS Contribution 348.38 15.07 5.25 5.25 Total: -1.00 -31.94 348.38 -8.49 -40.43 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.74 Total: -1.50 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.64 Total: -6.48 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.19 Total: -42.81 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.13 Total: 18.45 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.51 Total: -1.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.94 -8.49 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397711934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.747 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds