Wall clock time and date at job start Sat Apr 11 2020 00:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50700 * 109.47587 * 2 1 4 4 C 1.38130 * 119.54441 * 125.27948 * 3 2 1 5 5 C 1.39828 * 119.03032 * 180.27643 * 4 3 2 6 6 C 1.48154 * 120.91689 * 179.72985 * 5 4 3 7 7 O 1.21521 * 119.99720 * 49.64980 * 6 5 4 8 8 N 1.34774 * 120.00046 * 229.65641 * 6 5 4 9 9 C 1.46923 * 120.63146 * 356.18566 * 8 6 5 10 10 C 1.53202 * 108.77412 * 126.43884 * 9 8 6 11 11 C 1.53041 * 109.30949 * 54.63595 * 10 9 8 12 12 C 1.53034 * 109.53923 * 298.63243 * 11 10 9 13 13 H 1.09001 * 109.50190 * 301.38714 * 12 11 10 14 14 C 1.50703 * 109.49972 * 181.31736 * 12 11 10 15 15 H 1.07998 * 119.99544 * 0.07375 * 14 12 11 16 16 C 1.37876 * 120.00313 * 180.34113 * 14 12 11 17 17 N 1.31506 * 120.00204 * 179.72852 * 16 14 12 18 18 Si 1.86802 * 119.99909 * 359.72702 * 16 14 12 19 19 H 1.48499 * 109.47153 * 89.99943 * 18 16 14 20 20 H 1.48498 * 109.47369 * 210.00126 * 18 16 14 21 21 H 1.48504 * 109.47198 * 330.00218 * 18 16 14 22 22 C 1.46938 * 120.60280 * 176.21643 * 8 6 5 23 23 C 1.39782 * 118.17187 * 359.45592 * 5 4 3 24 24 C 1.38302 * 118.98811 * 0.28010 * 23 5 4 25 25 Cl 1.73605 * 119.56946 * 179.97438 * 24 23 5 26 26 N 1.31820 * 119.53886 * 305.00308 * 3 2 1 27 27 H 1.08999 * 109.47109 * 60.00028 * 1 2 3 28 28 H 1.09006 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47383 * 299.99943 * 1 2 3 30 30 H 1.09004 * 109.47383 * 240.00057 * 2 1 3 31 31 H 1.08998 * 109.47556 * 120.00599 * 2 1 3 32 32 H 1.07998 * 120.48478 * 0.02825 * 4 3 2 33 33 H 1.08995 * 109.58929 * 6.65633 * 9 8 6 34 34 H 1.09000 * 109.58992 * 246.22140 * 9 8 6 35 35 H 1.09001 * 109.49747 * 294.68816 * 10 9 8 36 36 H 1.08997 * 109.52321 * 174.60496 * 10 9 8 37 37 H 1.09000 * 109.45386 * 178.61764 * 11 10 9 38 38 H 1.08997 * 109.44814 * 58.65143 * 11 10 9 39 39 H 0.97000 * 120.00570 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.56258 * 113.76001 * 22 8 6 41 41 H 1.09000 * 109.61433 * 353.32904 * 22 8 6 42 42 H 1.07995 * 120.50797 * 180.24631 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9138 1.8315 0.9810 5 6 3.3686 3.1537 0.9742 6 6 4.3097 3.6403 2.0097 7 8 5.3160 3.0074 2.2618 8 7 4.0498 4.7849 2.6723 9 6 2.8816 5.6040 2.3216 10 6 2.0555 5.8523 3.5877 11 6 2.9527 6.4656 4.6652 12 6 4.0808 5.4900 5.0081 13 1 3.6548 4.5486 5.3553 14 6 4.9449 6.0811 6.0921 15 1 4.7123 7.0548 6.4972 16 6 6.0356 5.3812 6.5628 17 7 6.7928 5.8994 7.5050 18 14 6.4379 3.6969 5.8622 19 1 7.3498 3.8491 4.7002 20 1 7.0985 2.8718 6.9052 21 1 5.1849 3.0309 5.4242 22 6 4.9301 5.2369 3.7585 23 6 2.9154 4.0023 -0.0400 24 6 2.0371 3.5063 -0.9863 25 17 1.4642 4.5472 -2.2521 26 7 1.6288 2.2528 -0.9394 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.2437 1.1426 1.7445 33 1 2.2735 5.0775 1.5861 34 1 3.2138 6.5569 1.9095 35 1 1.6486 4.9073 3.9477 36 1 1.2386 6.5374 3.3612 37 1 2.3618 6.6659 5.5589 38 1 3.3789 7.3980 4.2951 39 1 7.5604 5.4072 7.8359 40 1 5.4298 6.1595 3.4633 41 1 5.6731 4.4683 3.9711 42 1 3.2456 5.0296 -0.0837 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397711934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:24 Heat of formation + Delta-G solvation = -29.560313 kcal Electronic energy + Delta-G solvation = -25278.768805 eV Core-core repulsion = 21669.561362 eV Total energy + Delta-G solvation = -3609.207444 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.18643 -40.77606 -38.65478 -37.83358 -35.78910 -35.04809 -33.99518 -33.40886 -32.25491 -30.96781 -27.57318 -27.04691 -25.61609 -24.79247 -23.65901 -23.19210 -21.41315 -20.26469 -19.06016 -18.81919 -17.88761 -17.67181 -17.14635 -16.60039 -16.54788 -16.11610 -15.75035 -15.48922 -15.24343 -15.11209 -14.91222 -14.73277 -14.57902 -14.08604 -13.81103 -13.61645 -13.26133 -13.22865 -12.96917 -12.61508 -12.45768 -12.37348 -12.35594 -12.17916 -12.00606 -11.88122 -11.66773 -11.59527 -11.21387 -11.13440 -11.03345 -10.82624 -10.64914 -10.02767 -9.76434 -8.40555 -6.42818 -0.50038 -0.34261 0.58099 1.21218 1.27925 1.33974 1.37211 1.75968 2.18905 2.33525 2.95578 2.98995 3.14789 3.58050 3.62198 3.82129 3.87698 4.02961 4.06228 4.13767 4.22435 4.36804 4.37815 4.43699 4.52408 4.55637 4.64426 4.69824 4.76264 4.80502 4.91932 5.04001 5.06065 5.15694 5.17050 5.17796 5.28411 5.43368 5.49099 5.58530 5.64411 6.20788 6.24503 6.46183 6.66158 6.82546 7.22909 8.75547 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.016599 B = 0.003912 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.485342 B = 7156.563236 C = 7933.020039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C 0.156 3.844 4 C -0.128 4.128 5 C -0.063 4.063 6 C 0.547 3.453 7 O -0.577 6.577 8 N -0.594 5.594 9 C 0.091 3.909 10 C -0.128 4.128 11 C -0.098 4.098 12 C 0.005 3.995 13 H 0.016 0.984 14 C -0.511 4.511 15 H 0.052 0.948 16 C 0.030 3.970 17 N -0.936 5.936 18 Si 0.933 3.067 19 H -0.280 1.280 20 H -0.293 1.293 21 H -0.265 1.265 22 C 0.108 3.892 23 C -0.130 4.130 24 C 0.176 3.824 25 Cl -0.010 7.010 26 N -0.473 5.473 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.267 0.733 40 H 0.073 0.927 41 H 0.051 0.949 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.654 -6.811 -20.005 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C 0.018 3.982 4 C -0.148 4.148 5 C -0.074 4.074 6 C 0.335 3.665 7 O -0.458 6.458 8 N -0.324 5.324 9 C -0.030 4.030 10 C -0.166 4.166 11 C -0.135 4.135 12 C -0.015 4.015 13 H 0.034 0.966 14 C -0.550 4.550 15 H 0.071 0.929 16 C -0.169 4.169 17 N -0.576 5.576 18 Si 0.762 3.238 19 H -0.207 1.207 20 H -0.220 1.220 21 H -0.190 1.190 22 C -0.014 4.014 23 C -0.151 4.151 24 C 0.012 3.988 25 Cl 0.018 6.982 26 N -0.185 5.185 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.170 0.830 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.610 -7.319 -20.492 26.780 hybrid contribution 1.606 -0.173 0.883 1.841 sum -14.004 -7.492 -19.609 25.234 Atomic orbital electron populations 1.21659 0.93125 1.03005 1.02053 1.20697 0.97718 0.87605 1.05117 1.21531 0.91644 0.97022 0.87971 1.22296 0.97225 0.94688 1.00634 1.20113 0.96505 0.95352 0.95466 1.18691 0.85327 0.80785 0.81686 1.90788 1.29286 1.58122 1.67609 1.48403 1.28037 1.22082 1.33927 1.22438 0.85764 0.96218 0.98532 1.21952 0.98324 1.01847 0.94444 1.21384 0.95699 0.98023 0.98439 1.19430 0.94501 0.96354 0.91223 0.96616 1.21295 1.10402 1.04501 1.18783 0.92938 1.25612 0.96244 1.00092 0.94931 1.69975 1.17952 1.39845 1.29867 0.86138 0.79051 0.81792 0.76813 1.20702 1.21988 1.19036 1.22270 0.93201 0.98790 0.87156 1.22087 0.97429 1.02175 0.93378 1.21551 0.95265 0.90325 0.91686 1.98425 1.87999 1.62232 1.49521 1.66728 1.24553 1.02664 1.24536 0.92430 0.90230 0.93237 0.88323 0.88180 0.83044 0.87614 0.88330 0.92483 0.87265 0.92339 0.91791 0.92312 0.90838 0.93127 0.81176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.77 71.98 0.70 -1.07 16 2 C -0.07 -1.00 6.33 29.84 0.19 -0.81 16 3 C 0.16 3.11 6.18 42.53 0.26 3.37 16 4 C -0.13 -2.99 9.45 22.63 0.21 -2.77 16 5 C -0.06 -1.67 5.05 -19.88 -0.10 -1.77 16 6 C 0.55 19.31 7.31 86.88 0.63 19.94 16 7 O -0.58 -25.70 16.48 -3.78 -0.06 -25.77 16 8 N -0.59 -20.23 2.97 -821.92 -2.44 -22.68 16 9 C 0.09 2.14 5.41 86.37 0.47 2.61 16 10 C -0.13 -3.14 6.08 30.68 0.19 -2.96 16 11 C -0.10 -3.33 5.11 30.62 0.16 -3.17 16 12 C 0.00 0.20 1.84 -11.46 -0.02 0.18 16 13 H 0.02 0.75 7.21 -2.39 -0.02 0.73 16 14 C -0.51 -28.17 9.15 25.60 0.23 -27.94 16 15 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 16 C 0.03 1.76 5.45 84.66 0.46 2.22 16 17 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 18 Si 0.93 48.51 24.32 68.60 1.67 50.18 16 19 H -0.28 -14.81 6.91 99.48 0.69 -14.12 16 20 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 21 H -0.27 -13.60 6.54 99.48 0.65 -12.95 16 22 C 0.11 4.61 5.10 86.36 0.44 5.05 16 23 C -0.13 -2.72 7.24 22.66 0.16 -2.55 16 24 C 0.18 3.59 7.27 84.69 0.62 4.21 16 25 Cl -0.01 -0.18 29.10 -2.72 -0.08 -0.26 16 26 N -0.47 -10.08 9.83 -175.00 -1.72 -11.80 16 27 H 0.06 0.84 7.94 -2.39 -0.02 0.82 16 28 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.09 7.87 -2.39 -0.02 1.07 16 32 H 0.15 3.42 7.95 -2.91 -0.02 3.40 16 33 H 0.11 2.01 4.51 -2.39 -0.01 1.99 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.05 2.50 2.33 -2.39 -0.01 2.49 16 42 H 0.17 2.89 7.07 -2.91 -0.02 2.87 16 Total: -1.00 -71.77 348.38 3.23 -68.53 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.96 Total: 4.94 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.61 Total: -5.47 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -3.86 Total: -92.16 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 1.67 Total: 50.18 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.08 Total: -0.26 kcal Total: -71.77 3.23 -68.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397711934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.974 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds