Wall clock time and date at job start Sat Apr 11 2020 00:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47471 * 2 1 4 4 H 1.09001 * 109.57991 * 304.72739 * 3 2 1 5 5 C 1.52720 * 109.77114 * 184.47739 * 3 2 1 6 6 N 1.46376 * 109.77297 * 182.58859 * 5 3 2 7 7 S 1.65604 * 119.64720 * 245.08649 * 6 5 3 8 8 O 1.42101 * 106.39884 * 156.18461 * 7 6 5 9 9 O 1.42093 * 106.40159 * 23.26778 * 7 6 5 10 10 N 1.65593 * 107.21648 * 269.72499 * 7 6 5 11 11 C 1.46498 * 120.00388 * 269.99784 * 10 7 6 12 12 C 1.46505 * 119.99939 * 90.00264 * 10 7 6 13 13 H 1.09002 * 109.47068 * 359.97438 * 12 10 7 14 14 C 1.52997 * 109.47212 * 239.99810 * 12 10 7 15 15 C 1.50699 * 109.47262 * 119.99723 * 12 10 7 16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 10 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47319 * 60.00570 * 19 17 15 21 21 H 1.48503 * 109.46734 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47266 * 300.00384 * 19 17 15 23 23 C 1.46377 * 120.70520 * 64.80776 * 6 5 3 24 24 C 1.53238 * 109.49134 * 295.19161 * 23 6 5 25 25 S 1.81739 * 108.79614 * 57.65339 * 24 23 6 26 26 H 1.09003 * 109.47602 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47609 * 300.00451 * 1 2 3 28 28 H 1.09005 * 109.46777 * 60.00078 * 1 2 3 29 29 H 1.09004 * 109.47134 * 239.99411 * 2 1 3 30 30 H 1.08999 * 109.47149 * 120.00144 * 2 1 3 31 31 H 1.09002 * 109.32682 * 62.49730 * 5 3 2 32 32 H 1.08997 * 109.32864 * 302.68034 * 5 3 2 33 33 H 1.08992 * 109.47421 * 270.00337 * 11 10 7 34 34 H 1.09007 * 109.46720 * 30.00347 * 11 10 7 35 35 H 1.09003 * 109.47218 * 150.00128 * 11 10 7 36 36 H 1.08996 * 109.47853 * 179.97438 * 14 12 10 37 37 H 1.09002 * 109.47153 * 300.00008 * 14 12 10 38 38 H 1.08998 * 109.47533 * 59.99637 * 14 12 10 39 39 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46781 * 55.19360 * 23 6 5 41 41 H 1.09000 * 109.46553 * 175.18123 * 23 6 5 42 42 H 1.08999 * 109.58270 * 177.44987 * 24 23 6 43 43 H 1.09006 * 109.57857 * 297.72628 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6102 1.9819 -0.8440 5 6 3.5631 1.4518 -0.1122 6 7 4.0557 2.8288 -0.0502 7 16 4.8043 3.4912 -1.3705 8 8 4.6620 4.8997 -1.2478 9 8 4.3478 2.7594 -2.4998 10 7 6.4227 3.1705 -1.2285 11 6 7.2982 4.1151 -0.5303 12 6 6.9791 1.9422 -1.8013 13 1 6.1826 1.3697 -2.2766 14 6 7.6157 1.1044 -0.6906 15 6 8.0255 2.2952 -2.8267 16 1 8.2536 3.3309 -3.0310 17 6 8.6924 1.2959 -3.5033 18 7 8.4150 0.0347 -3.2541 19 14 9.9899 1.7335 -4.7739 20 1 11.0747 2.5132 -4.1254 21 1 10.5538 0.4884 -5.3545 22 1 9.3725 2.5466 -5.8522 23 6 3.8883 3.6286 1.1643 24 6 2.3959 3.8666 1.4181 25 16 1.5608 2.2580 1.5518 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8577 1.0029 -1.0608 32 1 3.9889 0.8763 0.7097 33 1 7.6904 4.8413 -1.2421 34 1 6.7303 4.6337 0.2423 35 1 8.1250 3.5730 -0.0714 36 1 8.0293 0.1903 -1.1165 37 1 8.4121 1.6767 -0.2149 38 1 6.8590 0.8491 0.0511 39 1 8.8839 -0.6683 -3.7303 40 1 4.3206 3.0968 2.0119 41 1 4.3932 4.5866 1.0407 42 1 2.2675 4.4233 2.3463 43 1 1.9705 4.4336 0.5900 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407974621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:31 Heat of formation + Delta-G solvation = -78.862005 kcal Electronic energy + Delta-G solvation = -25081.451087 eV Core-core repulsion = 21607.593419 eV Total energy + Delta-G solvation = -3473.857668 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -37.64498 -36.89667 -36.22236 -35.33086 -34.77426 -32.62785 -30.80953 -29.15368 -28.59633 -25.65774 -25.17862 -24.09096 -22.40951 -21.51862 -20.74840 -18.69629 -17.69374 -16.98335 -16.40123 -16.29975 -15.95968 -15.24568 -14.98643 -14.73020 -14.33721 -13.98894 -13.58923 -13.47447 -13.32558 -13.11475 -12.86743 -12.78731 -12.18367 -12.15331 -11.94283 -11.81073 -11.62014 -11.42249 -11.37841 -11.30242 -11.19663 -11.10224 -11.00908 -10.83910 -10.75088 -10.52291 -10.32895 -10.06293 -9.78830 -9.33805 -9.18723 -8.49204 -8.03921 -7.70121 -6.11285 -4.17984 1.01841 1.67179 2.44221 3.27133 3.27973 3.32398 3.36080 3.92305 4.36824 4.47468 4.65310 4.78552 4.81575 4.88726 5.01968 5.13491 5.20222 5.25103 5.37120 5.43295 5.53299 5.54777 5.63172 5.72513 5.83657 5.88664 5.96223 6.05010 6.08087 6.18132 6.29797 6.51231 6.59358 6.72515 6.77082 6.96052 7.39480 7.57853 7.73641 7.99131 8.22738 8.83776 9.48038 10.94365 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.004428 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.540844 B = 6322.554364 C = 7043.156017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.063 4.063 4 H 0.091 0.909 5 C 0.123 3.877 6 N -1.013 6.013 7 S 2.773 3.227 8 O -0.992 6.992 9 O -0.969 6.969 10 N -0.988 5.988 11 C 0.110 3.890 12 C 0.268 3.732 13 H 0.057 0.943 14 C -0.148 4.148 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.121 3.879 24 C -0.101 4.101 25 S -0.255 6.255 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.033 0.967 38 H 0.011 0.989 39 H 0.264 0.736 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 2.186 11.028 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.193 4.193 4 H 0.110 0.890 5 C -0.004 4.004 6 N -0.850 5.850 7 S 2.783 3.217 8 O -0.976 6.976 9 O -0.953 6.953 10 N -0.831 5.831 11 C -0.036 4.036 12 C 0.166 3.834 13 H 0.075 0.925 14 C -0.207 4.207 15 C -0.561 4.561 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.007 4.007 24 C -0.251 4.251 25 S -0.029 6.029 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.131 0.869 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.726 2.103 11.104 16.285 hybrid contribution 1.677 0.533 -1.325 2.203 sum -10.048 2.635 9.778 14.266 Atomic orbital electron populations 1.21799 0.94977 1.01744 1.02473 1.21360 0.96690 0.92806 1.03517 1.23607 0.98976 0.99822 0.96939 0.89024 1.21402 0.91619 0.82489 1.04900 1.58273 1.73734 1.22385 1.30581 1.02239 0.73293 0.72994 0.73153 1.93531 1.86760 1.30522 1.86792 1.93595 1.80665 1.73597 1.47424 1.57743 1.23628 1.32556 1.69160 1.21149 0.95130 0.92005 0.95337 1.18742 0.94827 0.78932 0.90949 0.92498 1.22118 0.98687 1.02811 0.97102 1.21280 1.20603 0.93332 1.20876 0.92041 1.24895 0.97086 0.94890 0.96898 1.69838 1.42183 0.98916 1.41945 0.86555 0.81497 0.77738 0.81616 1.20211 1.21164 1.20151 1.21385 0.94770 0.96244 0.88273 1.23836 0.98284 0.96746 1.06211 1.86618 1.68651 1.17613 1.30002 0.92448 0.91873 0.92560 0.89913 0.90696 0.87681 0.89872 0.93214 0.93482 0.90859 0.88834 0.94751 0.97038 0.92599 0.89967 0.88363 0.86904 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.74 37.15 0.36 -1.09 16 2 C -0.10 -1.10 5.42 -26.73 -0.15 -1.24 16 3 C -0.06 -0.78 2.74 -26.88 -0.07 -0.86 16 4 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.72 5.43 -4.25 -0.02 1.70 16 6 N -1.01 -15.09 3.16 -114.59 -0.36 -15.46 16 7 S 2.77 53.29 6.01 -107.50 -0.65 52.65 16 8 O -0.99 -19.94 15.80 -57.17 -0.90 -20.85 16 9 O -0.97 -21.92 15.28 -57.17 -0.87 -22.79 16 10 N -0.99 -19.98 3.12 -115.85 -0.36 -20.34 16 11 C 0.11 1.91 9.53 59.85 0.57 2.48 16 12 C 0.27 6.37 2.62 -69.08 -0.18 6.19 16 13 H 0.06 1.49 6.91 -51.93 -0.36 1.13 16 14 C -0.15 -3.23 8.95 37.16 0.33 -2.90 16 15 C -0.52 -13.81 8.37 -34.44 -0.29 -14.09 16 16 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 19 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.12 1.46 6.17 -3.99 -0.02 1.43 16 24 C -0.10 -1.11 6.67 37.28 0.25 -0.86 16 25 S -0.26 -3.02 20.48 -107.50 -2.20 -5.22 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.63 7.14 -51.93 -0.37 0.26 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.63 6.96 -51.93 -0.36 1.27 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.67 7.79 -51.92 -0.40 0.26 16 35 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 36 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 37 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.10 1.16 6.97 -51.93 -0.36 0.80 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -30.52 357.43 -10.71 -41.24 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.04 Total: 0.78 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 0.68 Total: -7.62 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.10 Total: -59.42 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -1.78 Total: -43.63 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -2.85 Total: 47.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.52 -10.71 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407974621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.626 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds