Wall clock time and date at job start Sat Apr 11 2020 00:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 H 1.09005 * 109.58358 * 59.72962 * 4 2 1 6 6 C 1.53243 * 109.57960 * 179.97438 * 4 2 1 7 7 N 1.46383 * 109.48705 * 177.45120 * 6 4 2 8 8 S 1.65599 * 119.64306 * 114.89168 * 7 6 4 9 9 O 1.42100 * 106.40059 * 203.53844 * 8 7 6 10 10 O 1.42097 * 106.40401 * 336.45804 * 8 7 6 11 11 N 1.65597 * 107.21870 * 90.00156 * 8 7 6 12 12 C 1.46503 * 120.00087 * 89.99836 * 11 8 7 13 13 C 1.46501 * 119.99878 * 269.99440 * 11 8 7 14 14 C 1.50699 * 109.46844 * 95.00175 * 13 11 8 15 15 H 1.07999 * 120.00510 * 0.02562 * 14 13 11 16 16 C 1.37885 * 120.00037 * 179.97438 * 14 13 11 17 17 N 1.31521 * 119.99552 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00242 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46950 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46980 * 120.00137 * 18 16 14 21 21 H 1.48498 * 109.46962 * 240.00219 * 18 16 14 22 22 C 1.46378 * 120.70674 * 294.91331 * 7 6 4 23 23 C 1.53236 * 109.48823 * 65.08485 * 22 7 6 24 24 S 1.81739 * 109.58624 * 299.30843 * 4 2 1 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46634 * 297.45703 * 6 4 2 33 33 H 1.08999 * 109.47128 * 57.44748 * 6 4 2 34 34 H 1.08996 * 109.47019 * 90.00334 * 12 11 8 35 35 H 1.09005 * 109.46826 * 209.99931 * 12 11 8 36 36 H 1.08995 * 109.46847 * 329.99487 * 12 11 8 37 37 H 1.09005 * 109.47259 * 214.99945 * 13 11 8 38 38 H 1.09000 * 109.47335 * 335.00356 * 13 11 8 39 39 H 0.96999 * 119.99436 * 179.97438 * 17 16 14 40 40 H 1.08993 * 109.46407 * 185.09295 * 22 7 6 41 41 H 1.09001 * 109.46233 * 305.08181 * 22 7 6 42 42 H 1.09007 * 109.57743 * 62.13863 * 23 22 7 43 43 H 1.09000 * 109.58391 * 182.41008 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6736 -1.7479 1.2535 6 6 3.5724 -0.7233 1.2516 7 7 4.0580 -1.3599 2.4770 8 16 4.9005 -2.7824 2.3825 9 8 4.7539 -3.4202 3.6439 10 8 4.5235 -3.3914 1.1553 11 7 6.5038 -2.3939 2.2387 12 6 7.3300 -2.2367 3.4383 13 6 7.0961 -2.2075 0.9118 14 6 7.0795 -0.7433 0.5555 15 1 6.6693 -0.0235 1.2483 16 6 7.5891 -0.3224 -0.6546 17 7 8.0892 -1.1989 -1.4981 18 14 7.5679 1.4924 -1.0966 19 1 6.9562 2.2652 0.0142 20 1 8.9583 1.9637 -1.3199 21 1 6.7729 1.6910 -2.3350 22 6 3.8064 -0.7528 3.7850 23 6 2.3004 -0.7540 4.0680 24 16 1.4527 0.1449 2.7351 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 3.9362 -1.2768 0.3859 33 1 3.9371 0.3028 1.2062 34 1 7.7739 -3.1966 3.7020 35 1 8.1206 -1.5122 3.2425 36 1 6.7101 -1.8841 4.2626 37 1 8.1248 -2.5680 0.9191 38 1 6.5202 -2.7673 0.1748 39 1 8.4473 -0.9028 -2.3495 40 1 4.3215 -1.3254 4.5563 41 1 4.1755 0.2728 3.7864 42 1 1.9364 -1.7809 4.1046 43 1 2.1076 -0.2638 5.0223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408236307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:41 Heat of formation + Delta-G solvation = -101.825832 kcal Electronic energy + Delta-G solvation = -25411.691259 eV Core-core repulsion = 21936.837805 eV Total energy + Delta-G solvation = -3474.853454 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.99574 -38.48306 -37.24508 -36.98051 -36.74432 -34.48956 -31.88380 -29.74939 -29.64756 -28.07575 -26.79691 -24.86099 -24.22952 -23.40305 -21.27197 -20.03281 -19.05222 -18.63653 -18.26445 -17.47405 -17.10947 -16.66292 -16.41406 -16.07287 -15.60589 -15.19470 -15.04777 -14.92388 -14.41997 -14.33058 -14.06411 -14.03529 -13.96406 -13.51097 -13.46505 -13.24626 -13.04248 -13.01781 -12.94109 -12.89340 -12.61615 -12.48856 -12.39018 -12.20614 -12.01911 -11.93367 -11.71344 -11.70042 -11.60430 -10.68352 -10.59565 -10.23303 -9.79217 -8.55606 -8.17440 -6.31295 -0.42532 0.77607 1.42244 1.44950 1.54683 1.55487 1.85744 2.40818 2.46031 3.14548 3.25974 3.54997 3.63618 3.82509 3.90602 4.03977 4.06643 4.19779 4.29292 4.42047 4.50435 4.61566 4.65629 4.68748 4.73944 4.82225 4.86222 4.90753 4.96939 5.03319 5.04199 5.05448 5.21019 5.24921 5.40456 5.43782 5.47589 5.53314 5.74205 5.90797 6.08594 6.81273 7.39394 8.91109 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011026 B = 0.007002 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.903362 B = 3998.102417 C = 5567.161427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 C -0.151 4.151 4 C -0.060 4.060 5 H 0.078 0.922 6 C 0.129 3.871 7 N -1.001 6.001 8 S 2.793 3.207 9 O -0.999 6.999 10 O -1.012 7.012 11 N -1.002 6.002 12 C 0.097 3.903 13 C 0.257 3.743 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.013 3.987 17 N -0.929 5.929 18 Si 0.954 3.046 19 H -0.255 1.255 20 H -0.284 1.284 21 H -0.281 1.281 22 C 0.113 3.887 23 C -0.103 4.103 24 S -0.236 6.236 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.265 0.735 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 5.401 9.393 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.191 4.191 5 H 0.097 0.903 6 C 0.002 3.998 7 N -0.841 5.841 8 S 2.803 3.197 9 O -0.983 6.983 10 O -0.996 6.996 11 N -0.844 5.844 12 C -0.048 4.048 13 C 0.134 3.866 14 C -0.575 4.575 15 H 0.091 0.909 16 C -0.186 4.186 17 N -0.569 5.569 18 Si 0.779 3.221 19 H -0.179 1.179 20 H -0.210 1.210 21 H -0.206 1.206 22 C -0.013 4.013 23 C -0.253 4.253 24 S -0.009 6.009 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.680 5.357 9.376 16.655 hybrid contribution 1.480 -0.308 -0.826 1.722 sum -11.200 5.049 8.550 14.968 Atomic orbital electron populations 1.21813 0.93011 1.02212 1.02699 1.20992 0.97465 0.96807 0.94645 1.21956 1.00991 0.94988 1.02875 1.23702 0.97279 1.01559 0.96542 0.90325 1.21547 0.92422 1.00224 0.85630 1.57780 1.70051 1.43705 1.12531 1.01408 0.72821 0.73697 0.71785 1.93517 1.86713 1.73997 1.44085 1.93522 1.82991 1.75493 1.47575 1.57568 1.26777 1.86389 1.13631 1.21487 0.96396 1.02018 0.84928 1.18797 0.93757 0.96439 0.77641 1.21804 1.40219 0.93174 1.02333 0.90896 1.25784 0.94728 1.01913 0.96194 1.70076 1.41203 1.35884 1.09732 0.85555 0.77801 0.80079 0.78638 1.17902 1.20959 1.20638 1.21674 0.95580 1.01275 0.82768 1.23944 0.96947 1.03660 1.00752 1.86446 1.63767 1.49292 1.01413 0.91121 0.92630 0.91756 0.90247 0.91327 0.91167 0.93183 0.90356 0.89093 0.92636 0.90607 0.90188 0.96242 0.96452 0.92585 0.87665 0.88457 0.90212 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.97 71.98 0.65 -2.18 16 2 C -0.08 -1.92 2.75 -10.79 -0.03 -1.95 16 3 C -0.15 -3.51 8.60 71.98 0.62 -2.89 16 4 C -0.06 -1.66 2.56 30.68 0.08 -1.58 16 5 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 6 C 0.13 4.21 5.18 86.48 0.45 4.66 16 7 N -1.00 -32.03 3.15 -515.49 -1.63 -33.66 16 8 S 2.79 109.04 6.01 -56.49 -0.34 108.70 16 9 O -1.00 -38.52 15.80 -128.00 -2.02 -40.54 16 10 O -1.01 -47.36 15.28 -128.00 -1.96 -49.31 16 11 N -1.00 -40.60 3.23 -543.22 -1.75 -42.35 16 12 C 0.10 3.12 10.31 127.77 1.32 4.43 16 13 C 0.26 12.83 5.41 85.63 0.46 13.29 16 14 C -0.54 -27.11 9.38 25.60 0.24 -26.87 16 15 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 16 C 0.01 0.70 5.46 84.66 0.46 1.16 16 17 N -0.93 -52.96 13.29 21.45 0.28 -52.68 16 18 Si 0.95 40.85 29.54 68.60 2.03 42.88 16 19 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.11 2.74 6.17 86.48 0.53 3.27 16 23 C -0.10 -2.18 6.66 72.06 0.48 -1.70 16 24 S -0.24 -5.57 18.74 -56.49 -1.06 -6.63 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.30 6.95 -2.39 -0.02 1.29 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.58 6.90 -2.39 -0.02 1.56 16 31 H 0.05 1.31 6.38 -2.39 -0.02 1.29 16 32 H 0.08 3.04 6.97 -2.39 -0.02 3.03 16 33 H 0.09 2.90 6.31 -2.39 -0.02 2.88 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.08 2.41 8.07 -2.38 -0.02 2.39 16 36 H 0.08 2.09 7.79 -2.39 -0.02 2.07 16 37 H 0.02 1.03 8.11 -2.38 -0.02 1.01 16 38 H 0.02 0.98 6.91 -2.39 -0.02 0.96 16 39 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.11 2.35 6.97 -2.39 -0.02 2.34 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -64.42 358.59 -0.20 -64.62 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.98 Total: 19.33 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.26 Total: -10.35 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -3.09 Total: -128.69 kcal Atomic # 8 Polarization: -85.87 SS G_CDS: -3.98 Total: -89.85 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: 103.46 SS G_CDS: -1.40 Total: 102.07 kcal Total: -64.42 -0.20 -64.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408236307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.203 kcal (2) G-P(sol) polarization free energy of solvation -64.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds