Wall clock time and date at job start Sat Apr 11 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46613 * 2 1 4 4 C 1.52995 * 109.46972 * 119.99846 * 2 1 3 5 5 H 1.08995 * 109.58812 * 304.72893 * 4 2 1 6 6 C 1.52725 * 109.76709 * 184.48128 * 4 2 1 7 7 N 1.46382 * 109.77063 * 182.59222 * 6 4 2 8 8 S 1.65601 * 119.64637 * 245.08441 * 7 6 4 9 9 O 1.42096 * 106.40004 * 156.18734 * 8 7 6 10 10 O 1.42105 * 106.39827 * 23.26815 * 8 7 6 11 11 N 1.65600 * 107.21674 * 269.72892 * 8 7 6 12 12 C 1.46500 * 119.99850 * 269.99886 * 11 8 7 13 13 C 1.46506 * 119.99836 * 90.00160 * 11 8 7 14 14 C 1.50698 * 109.47006 * 264.99345 * 13 11 8 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 11 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 C 1.46374 * 120.70641 * 64.81244 * 7 6 4 23 23 C 1.53244 * 109.48537 * 295.18734 * 22 7 6 24 24 S 1.81732 * 108.80021 * 57.65835 * 23 22 7 25 25 H 1.08999 * 109.47458 * 300.00108 * 1 2 3 26 26 H 1.09001 * 109.47295 * 60.00329 * 1 2 3 27 27 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47146 * 240.00585 * 2 1 3 29 29 H 1.09001 * 109.46803 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47284 * 299.99596 * 3 2 1 31 31 H 1.09001 * 109.47395 * 60.00336 * 3 2 1 32 32 H 1.09002 * 109.33174 * 62.49819 * 6 4 2 33 33 H 1.09004 * 109.32898 * 302.68014 * 6 4 2 34 34 H 1.09002 * 109.46518 * 270.00035 * 12 11 8 35 35 H 1.08997 * 109.47244 * 30.00273 * 12 11 8 36 36 H 1.09001 * 109.47015 * 150.00334 * 12 11 8 37 37 H 1.09001 * 109.47068 * 145.00009 * 13 11 8 38 38 H 1.08993 * 109.47068 * 24.99463 * 13 11 8 39 39 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 40 40 H 1.08995 * 109.46963 * 55.18804 * 22 7 6 41 41 H 1.08999 * 109.46727 * 175.18553 * 22 7 6 42 42 H 1.09003 * 109.58174 * 177.45291 * 23 22 7 43 43 H 1.09003 * 109.58320 * 297.86023 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6102 -0.2601 2.1384 6 6 3.5630 -0.6286 1.3135 7 7 4.0556 -1.3709 2.4751 8 16 4.8042 -0.5587 3.7089 9 8 4.6619 -1.3693 4.8673 10 8 4.3476 0.7852 3.6398 11 7 6.4226 -0.5212 3.3603 12 6 7.2980 -1.5983 3.8291 13 6 6.9790 0.5890 2.5829 14 6 7.0413 0.2019 1.1279 15 1 6.7002 -0.7735 0.8135 16 6 7.5328 1.0932 0.1978 17 7 7.9476 2.2810 0.5805 18 14 7.6093 0.6135 -1.6059 19 1 8.1734 1.7389 -2.3939 20 1 6.2416 0.3034 -2.0942 21 1 8.4744 -0.5831 -1.7637 22 6 3.8884 -2.8225 2.5603 23 6 2.3959 -3.1613 2.6395 24 16 1.5609 -2.4730 1.1795 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.8577 0.4173 1.3991 33 1 3.9890 -1.0527 0.4042 34 1 7.6902 -1.3448 4.8141 35 1 6.7303 -2.5266 3.8919 36 1 8.1249 -1.7246 3.1303 37 1 7.9828 0.8165 2.9416 38 1 6.3440 1.4674 2.6984 39 1 7.9075 2.5302 1.5171 40 1 4.3207 -3.2906 1.6760 41 1 4.3931 -3.1946 3.4519 42 1 2.2675 -4.2436 2.6575 43 1 1.9699 -2.7258 3.5433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408236309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:44 Heat of formation + Delta-G solvation = -87.659094 kcal Electronic energy + Delta-G solvation = -25466.458720 eV Core-core repulsion = 21992.219582 eV Total energy + Delta-G solvation = -3474.239138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -37.88240 -36.96110 -35.75469 -35.65597 -35.41253 -32.72697 -30.85723 -28.60752 -27.56846 -27.11209 -24.92932 -23.87809 -22.57424 -22.19513 -20.11248 -18.79976 -17.79251 -17.26272 -16.68346 -16.18833 -16.02515 -15.12546 -14.78938 -14.51953 -14.08712 -13.95259 -13.81911 -13.55184 -13.41016 -13.35270 -12.79103 -12.60429 -12.46726 -12.35204 -12.08792 -11.99259 -11.83640 -11.73187 -11.43629 -11.38551 -11.20189 -11.13900 -10.89485 -10.68750 -10.67395 -10.61389 -10.55197 -10.19541 -9.66018 -9.47515 -9.06034 -8.51013 -8.03690 -7.59615 -6.50529 -4.25882 1.03165 1.76575 2.54784 3.22160 3.34592 3.35354 3.54300 3.88697 4.41055 4.54472 4.69853 4.82483 4.85148 4.93063 5.07798 5.18565 5.23321 5.34595 5.37724 5.43568 5.51072 5.62691 5.65971 5.77843 5.82823 5.91156 5.92107 5.99913 6.04224 6.12485 6.17483 6.20206 6.35470 6.37617 6.46932 6.70680 6.92986 7.12923 7.36627 7.88201 8.30669 8.66725 9.46015 10.86627 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.006950 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.501581 B = 4027.530019 C = 5426.843173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.153 4.153 4 C -0.057 4.057 5 H 0.089 0.911 6 C 0.128 3.872 7 N -1.004 6.004 8 S 2.784 3.216 9 O -0.996 6.996 10 O -0.975 6.975 11 N -0.991 5.991 12 C 0.106 3.894 13 C 0.234 3.766 14 C -0.620 4.620 15 H 0.057 0.943 16 C 0.024 3.976 17 N -0.904 5.904 18 Si 1.064 2.936 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.288 1.288 22 C 0.121 3.879 23 C -0.099 4.099 24 S -0.258 6.258 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.040 0.960 39 H 0.270 0.730 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 -8.758 0.938 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.094 4.094 3 C -0.212 4.212 4 C -0.188 4.188 5 H 0.107 0.893 6 C 0.001 3.999 7 N -0.841 5.841 8 S 2.793 3.207 9 O -0.980 6.980 10 O -0.959 6.959 11 N -0.833 5.833 12 C -0.040 4.040 13 C 0.111 3.889 14 C -0.659 4.659 15 H 0.075 0.925 16 C -0.181 4.181 17 N -0.539 5.539 18 Si 0.892 3.108 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.214 1.214 22 C -0.007 4.007 23 C -0.250 4.250 24 S -0.030 6.030 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.884 -8.386 -0.523 13.750 hybrid contribution 0.575 -0.282 2.087 2.183 sum -10.309 -8.668 1.565 13.560 Atomic orbital electron populations 1.21876 0.94544 1.02179 1.01778 1.20921 0.96186 0.96372 0.95891 1.21972 1.02605 0.94477 1.02122 1.23680 0.99399 0.93161 1.02546 0.89289 1.21484 0.90759 0.98474 0.89227 1.57971 1.73544 1.15501 1.37124 1.01863 0.73028 0.72965 0.72858 1.93535 1.86678 1.71004 1.46738 1.93569 1.80479 1.35111 1.86729 1.57500 1.24557 1.32698 1.68554 1.21236 0.95494 0.88331 0.98952 1.19295 0.94884 0.83819 0.90879 1.22326 1.47833 1.03497 0.92218 0.92452 1.25756 0.93262 0.93481 1.05630 1.70796 1.43274 1.20109 1.19717 0.83612 0.76751 0.75707 0.74779 1.20660 1.21078 1.21437 1.21380 0.94707 0.80783 1.03845 1.23822 0.98307 1.04103 0.98723 1.86573 1.68376 1.09711 1.38379 0.92621 0.92450 0.91940 0.89995 0.91092 0.92099 0.92249 0.87022 0.89645 0.93658 0.92853 0.90662 0.95448 0.94208 0.91951 0.89865 0.88661 0.86966 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.02 37.16 0.34 -1.28 16 2 C -0.07 -0.94 2.51 -90.62 -0.23 -1.17 16 3 C -0.15 -2.03 8.72 37.16 0.32 -1.71 16 4 C -0.06 -0.82 2.32 -26.87 -0.06 -0.88 16 5 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 6 C 0.13 2.12 4.88 -4.25 -0.02 2.10 16 7 N -1.00 -16.68 3.16 -114.58 -0.36 -17.04 16 8 S 2.78 54.42 6.02 -107.50 -0.65 53.77 16 9 O -1.00 -19.77 15.80 -57.17 -0.90 -20.67 16 10 O -0.97 -21.88 15.27 -57.17 -0.87 -22.75 16 11 N -0.99 -20.12 3.23 -123.05 -0.40 -20.51 16 12 C 0.11 1.79 10.31 59.85 0.62 2.41 16 13 C 0.23 5.61 4.72 -5.19 -0.02 5.58 16 14 C -0.62 -15.68 9.38 -34.44 -0.32 -16.00 16 15 H 0.06 1.42 7.81 -52.48 -0.41 1.01 16 16 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 17 N -0.90 -25.76 13.65 55.43 0.76 -25.00 16 18 Si 1.06 23.49 29.90 -169.99 -5.08 18.41 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.12 1.63 6.18 -3.98 -0.02 1.60 16 23 C -0.10 -1.21 6.66 37.28 0.25 -0.96 16 24 S -0.26 -3.43 20.49 -107.50 -2.20 -5.63 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.70 7.14 -51.93 -0.37 0.33 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.08 6.43 -51.93 -0.33 0.75 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 2.10 5.34 -51.93 -0.28 1.82 16 33 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 36 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 37 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 38 H 0.04 1.03 6.78 -51.93 -0.35 0.68 16 39 H 0.27 7.70 7.22 -40.82 -0.29 7.40 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.10 1.22 6.97 -51.93 -0.36 0.86 16 42 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -30.26 360.10 -10.62 -40.88 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.08 Total: 2.87 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 0.74 Total: -9.75 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.00 Total: -62.56 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.78 Total: -43.42 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.08 Total: 18.41 kcal Atomic # 16 Polarization: 50.99 SS G_CDS: -2.85 Total: 48.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.26 -10.62 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408236309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.777 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds