Wall clock time and date at job start Sat Apr 11 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46613 * 2 1 4 4 C 1.52995 * 109.46972 * 119.99846 * 2 1 3 5 5 H 1.08995 * 109.58812 * 304.72893 * 4 2 1 6 6 C 1.52725 * 109.76709 * 184.48128 * 4 2 1 7 7 N 1.46382 * 109.77063 * 182.59222 * 6 4 2 8 8 S 1.65601 * 119.64637 * 245.08441 * 7 6 4 9 9 O 1.42096 * 106.40004 * 156.18734 * 8 7 6 10 10 O 1.42105 * 106.39827 * 23.26815 * 8 7 6 11 11 N 1.65600 * 107.21674 * 269.72892 * 8 7 6 12 12 C 1.46500 * 119.99850 * 269.99886 * 11 8 7 13 13 C 1.46506 * 119.99836 * 90.00160 * 11 8 7 14 14 C 1.50698 * 109.47006 * 264.99345 * 13 11 8 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 13 11 17 17 N 1.31511 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47297 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47261 * 60.00310 * 18 16 14 21 21 H 1.48500 * 109.47454 * 300.00304 * 18 16 14 22 22 C 1.46374 * 120.70641 * 64.81244 * 7 6 4 23 23 C 1.53244 * 109.48537 * 295.18734 * 22 7 6 24 24 S 1.81732 * 108.80021 * 57.65835 * 23 22 7 25 25 H 1.08999 * 109.47458 * 300.00108 * 1 2 3 26 26 H 1.09001 * 109.47295 * 60.00329 * 1 2 3 27 27 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47146 * 240.00585 * 2 1 3 29 29 H 1.09001 * 109.46803 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47284 * 299.99596 * 3 2 1 31 31 H 1.09001 * 109.47395 * 60.00336 * 3 2 1 32 32 H 1.09002 * 109.33174 * 62.49819 * 6 4 2 33 33 H 1.09004 * 109.32898 * 302.68014 * 6 4 2 34 34 H 1.09002 * 109.46518 * 270.00035 * 12 11 8 35 35 H 1.08997 * 109.47244 * 30.00273 * 12 11 8 36 36 H 1.09001 * 109.47015 * 150.00334 * 12 11 8 37 37 H 1.09001 * 109.47068 * 145.00009 * 13 11 8 38 38 H 1.08993 * 109.47068 * 24.99463 * 13 11 8 39 39 H 0.97001 * 119.99934 * 359.97438 * 17 16 14 40 40 H 1.08995 * 109.46963 * 55.18804 * 22 7 6 41 41 H 1.08999 * 109.46727 * 175.18553 * 22 7 6 42 42 H 1.09003 * 109.58174 * 177.45291 * 23 22 7 43 43 H 1.09003 * 109.58320 * 297.86023 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6102 -0.2601 2.1384 6 6 3.5630 -0.6286 1.3135 7 7 4.0556 -1.3709 2.4751 8 16 4.8042 -0.5587 3.7089 9 8 4.6619 -1.3693 4.8673 10 8 4.3476 0.7852 3.6398 11 7 6.4226 -0.5212 3.3603 12 6 7.2980 -1.5983 3.8291 13 6 6.9790 0.5890 2.5829 14 6 7.0413 0.2019 1.1279 15 1 6.7002 -0.7735 0.8135 16 6 7.5328 1.0932 0.1978 17 7 7.9476 2.2810 0.5805 18 14 7.6093 0.6135 -1.6059 19 1 8.1734 1.7389 -2.3939 20 1 6.2416 0.3034 -2.0942 21 1 8.4744 -0.5831 -1.7637 22 6 3.8884 -2.8225 2.5603 23 6 2.3959 -3.1613 2.6395 24 16 1.5609 -2.4730 1.1795 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.8577 0.4173 1.3991 33 1 3.9890 -1.0527 0.4042 34 1 7.6902 -1.3448 4.8141 35 1 6.7303 -2.5266 3.8919 36 1 8.1249 -1.7246 3.1303 37 1 7.9828 0.8165 2.9416 38 1 6.3440 1.4674 2.6984 39 1 7.9075 2.5302 1.5171 40 1 4.3207 -3.2906 1.6760 41 1 4.3931 -3.1946 3.4519 42 1 2.2675 -4.2436 2.6575 43 1 1.9699 -2.7258 3.5433 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408236309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:44 Heat of formation + Delta-G solvation = -106.631565 kcal Electronic energy + Delta-G solvation = -25467.281428 eV Core-core repulsion = 21992.219582 eV Total energy + Delta-G solvation = -3475.061846 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.08934 -38.57766 -37.46751 -37.07266 -36.77034 -34.67577 -31.96313 -29.77255 -29.34997 -28.13521 -26.63992 -24.98464 -24.44324 -23.44612 -21.18251 -20.25507 -19.27313 -19.09175 -18.35957 -17.50975 -17.34377 -16.44729 -16.08743 -15.73732 -15.62022 -15.53913 -15.02858 -15.00017 -14.65043 -14.58518 -14.23506 -14.04003 -13.99860 -13.59571 -13.49754 -13.37770 -13.23482 -13.13013 -12.99107 -12.95083 -12.62759 -12.39946 -12.33641 -12.22910 -11.99051 -11.93229 -11.71648 -11.62722 -11.29675 -10.78607 -10.55104 -10.32927 -9.79068 -8.65397 -8.61481 -6.37955 -0.51996 0.71351 1.48917 1.56445 1.62532 1.75575 1.81250 2.34737 2.58207 3.14587 3.20072 3.47368 3.59104 3.76360 3.86168 3.93918 4.01568 4.15662 4.24366 4.34434 4.45208 4.53153 4.58988 4.60788 4.65001 4.76089 4.79089 4.83077 4.89462 4.90548 4.95500 4.96565 5.02274 5.17782 5.26136 5.36375 5.39945 5.44030 5.71635 5.85724 6.24925 6.52875 7.42443 8.74766 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.010967 B = 0.006950 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.501581 B = 4027.530019 C = 5426.843173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.152 4.152 4 C -0.058 4.058 5 H 0.078 0.922 6 C 0.130 3.870 7 N -1.001 6.001 8 S 2.794 3.206 9 O -0.997 6.997 10 O -1.011 7.011 11 N -0.999 5.999 12 C 0.097 3.903 13 C 0.245 3.755 14 C -0.611 4.611 15 H 0.065 0.935 16 C -0.025 4.025 17 N -0.935 5.935 18 Si 1.105 2.895 19 H -0.290 1.290 20 H -0.263 1.263 21 H -0.270 1.270 22 C 0.112 3.888 23 C -0.098 4.098 24 S -0.248 6.248 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.014 0.986 38 H 0.012 0.988 39 H 0.256 0.744 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.145 0.855 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 -11.355 -0.034 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.211 4.211 4 C -0.188 4.188 5 H 0.096 0.904 6 C 0.002 3.998 7 N -0.840 5.840 8 S 2.803 3.197 9 O -0.981 6.981 10 O -0.995 6.995 11 N -0.840 5.840 12 C -0.048 4.048 13 C 0.121 3.879 14 C -0.650 4.650 15 H 0.083 0.917 16 C -0.224 4.224 17 N -0.572 5.572 18 Si 0.927 3.073 19 H -0.216 1.216 20 H -0.188 1.188 21 H -0.195 1.195 22 C -0.014 4.014 23 C -0.248 4.248 24 S -0.019 6.019 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.163 0.837 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.056 -11.020 -1.458 16.399 hybrid contribution 0.918 0.460 2.474 2.679 sum -11.138 -10.561 1.017 15.383 Atomic orbital electron populations 1.21821 0.92852 1.02477 1.02566 1.20934 0.97490 0.95511 0.95150 1.21956 1.00905 0.95435 1.02780 1.23606 0.97487 0.94797 1.02952 0.90354 1.21432 0.92532 0.96888 0.88904 1.57765 1.72952 1.17008 1.36325 1.01397 0.72755 0.72320 0.73180 1.93523 1.86655 1.70728 1.47196 1.93522 1.81010 1.37610 1.87346 1.57459 1.25432 1.32750 1.68335 1.21494 0.95542 0.88390 0.99405 1.18905 0.93642 0.84297 0.91050 1.22543 1.46353 1.03436 0.92694 0.91683 1.27120 0.92673 0.93000 1.09591 1.70918 1.45766 1.21628 1.18846 0.83096 0.78139 0.75747 0.70347 1.21571 1.18752 1.19489 1.21702 0.96109 0.78533 1.05098 1.23919 0.96895 1.06025 0.97963 1.86532 1.68398 1.08080 1.38931 0.92677 0.90870 0.91813 0.89703 0.93675 0.90251 0.92794 0.89948 0.89641 0.92482 0.90035 0.90759 0.96792 0.96974 0.93453 0.88378 0.87613 0.83675 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.02 71.98 0.65 -2.16 16 2 C -0.07 -1.73 2.51 -10.79 -0.03 -1.75 16 3 C -0.15 -4.04 8.72 71.98 0.63 -3.41 16 4 C -0.06 -1.60 2.32 30.50 0.07 -1.53 16 5 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 6 C 0.13 4.28 4.88 86.31 0.42 4.70 16 7 N -1.00 -32.26 3.16 -516.42 -1.63 -33.89 16 8 S 2.79 108.98 6.02 -56.49 -0.34 108.65 16 9 O -1.00 -38.37 15.80 -128.00 -2.02 -40.39 16 10 O -1.01 -46.95 15.27 -128.00 -1.95 -48.90 16 11 N -1.00 -40.47 3.23 -543.22 -1.75 -42.23 16 12 C 0.10 3.13 10.31 127.77 1.32 4.45 16 13 C 0.25 12.09 4.72 85.63 0.40 12.50 16 14 C -0.61 -31.11 9.38 25.60 0.24 -30.87 16 15 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 16 C -0.02 -1.31 5.46 84.65 0.46 -0.85 16 17 N -0.93 -54.72 13.65 21.45 0.29 -54.43 16 18 Si 1.10 46.60 29.90 68.60 2.05 48.65 16 19 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 22 C 0.11 2.72 6.18 86.48 0.53 3.25 16 23 C -0.10 -2.08 6.66 72.06 0.48 -1.60 16 24 S -0.25 -5.95 20.49 -56.49 -1.16 -7.11 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.28 7.14 -2.39 -0.02 1.26 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.42 6.43 -2.39 -0.02 1.40 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 3.23 5.34 -2.39 -0.01 3.21 16 33 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 36 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 37 H 0.01 0.72 7.98 -2.39 -0.02 0.70 16 38 H 0.01 0.67 6.78 -2.39 -0.02 0.66 16 39 H 0.26 15.28 7.22 -92.71 -0.67 14.61 16 40 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.11 2.37 6.97 -2.39 -0.02 2.35 16 42 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -65.59 360.10 -0.25 -65.84 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 1.08 Total: 21.09 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 5.18 Total: -17.28 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -3.09 Total: -130.55 kcal Atomic # 8 Polarization: -85.32 SS G_CDS: -3.98 Total: -89.29 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.05 Total: 48.65 kcal Atomic # 16 Polarization: 103.03 SS G_CDS: -1.50 Total: 101.54 kcal Total: -65.59 -0.25 -65.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408236309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.792 kcal (2) G-P(sol) polarization free energy of solvation -65.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds