Wall clock time and date at job start Sat Apr 11 2020 00:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 115.55004 * 2 1 4 4 C 1.53079 * 117.49185 * 214.27533 * 2 1 3 5 5 C 1.52993 * 117.49908 * 145.67421 * 2 1 3 6 6 H 1.08998 * 117.50110 * 359.97438 * 5 2 1 7 7 C 1.53006 * 117.50097 * 214.97852 * 5 2 1 8 8 H 1.09000 * 109.47000 * 60.08646 * 7 5 2 9 9 N 1.46497 * 109.46844 * 300.08674 * 7 5 2 10 10 C 1.34774 * 120.00266 * 84.99969 * 9 7 5 11 11 O 1.21587 * 119.99839 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00429 * 180.02562 * 10 9 7 13 13 C 1.46501 * 120.00686 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47667 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99983 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00105 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00093 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99866 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.47110 * 90.00433 * 18 16 14 20 20 H 1.48500 * 109.47458 * 210.00131 * 18 16 14 21 21 H 1.48498 * 109.47573 * 330.00400 * 18 16 14 22 22 C 1.50701 * 109.47151 * 180.08827 * 7 5 2 23 23 C 1.38235 * 119.98563 * 79.72558 * 22 7 5 24 24 C 1.38224 * 120.00860 * 179.72226 * 23 22 7 25 25 C 1.38354 * 119.98532 * 0.55436 * 24 23 22 26 26 Cl 1.73602 * 120.01209 * 179.70353 * 25 24 23 27 27 C 1.38347 * 119.97406 * 359.71780 * 25 24 23 28 28 C 1.38211 * 119.98718 * 0.02562 * 27 25 24 29 29 H 1.09000 * 109.46849 * 274.33314 * 1 2 3 30 30 H 1.09003 * 109.47159 * 34.32535 * 1 2 3 31 31 H 1.08998 * 109.47474 * 154.32794 * 1 2 3 32 32 H 1.09002 * 117.50988 * 145.03328 * 4 2 1 33 33 H 1.08994 * 117.49109 * 359.97438 * 4 2 1 34 34 H 0.97003 * 120.00305 * 265.00093 * 9 7 5 35 35 H 0.97005 * 120.00296 * 359.97438 * 12 10 9 36 36 H 1.09005 * 109.46997 * 300.00248 * 13 12 10 37 37 H 1.09001 * 109.46965 * 59.99187 * 13 12 10 38 38 H 0.97000 * 119.99653 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.99985 * 0.02562 * 23 22 7 40 40 H 1.07997 * 120.00687 * 180.26787 * 24 23 22 41 41 H 1.08000 * 120.00621 * 179.97438 * 27 25 24 42 42 H 1.08004 * 119.99381 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2366 -1.1221 -0.7647 5 6 2.2364 -1.1207 0.7653 6 1 1.6112 -1.8579 1.2691 7 6 3.5490 -0.7755 1.4716 8 1 3.3698 0.0067 2.2093 9 7 4.5244 -0.3031 0.4859 10 6 4.5337 0.9923 0.1144 11 8 3.7322 1.7689 0.5969 12 7 5.4306 1.4268 -0.7928 13 6 5.4411 2.8351 -1.1964 14 6 6.5312 3.0585 -2.2127 15 1 7.1542 2.2340 -2.5264 16 6 6.7338 4.3156 -2.7413 17 7 7.6848 4.5105 -3.6286 18 14 5.6567 5.7419 -2.1982 19 1 6.2732 6.4083 -1.0229 20 1 5.5297 6.7179 -3.3102 21 1 4.3110 5.2337 -1.8296 22 6 4.0862 -2.0030 2.1615 23 6 4.7639 -2.9634 1.4341 24 6 5.2618 -4.0867 2.0673 25 6 5.0717 -4.2551 3.4273 26 17 5.6900 -5.6693 4.2220 27 6 4.3883 -3.2962 4.1537 28 6 3.8956 -2.1709 3.5204 29 1 -0.3633 0.0776 1.0247 30 1 -0.3633 0.8487 -0.5795 31 1 -0.3634 -0.9262 -0.4452 32 1 3.1718 -0.8769 -1.2681 33 1 1.6112 -1.8600 -1.2671 34 1 5.1636 -0.9227 0.1006 35 1 6.0699 0.8072 -1.1782 36 1 4.4771 3.0949 -1.6339 37 1 5.6246 3.4618 -0.3236 38 1 7.8275 5.3950 -4.0002 39 1 4.9088 -2.8338 0.3717 40 1 5.7951 -4.8349 1.4998 41 1 4.2393 -3.4274 5.2153 42 1 3.3625 -1.4221 4.0874 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426445084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:54 Heat of formation + Delta-G solvation = -7.666229 kcal Electronic energy + Delta-G solvation = -24446.461828 eV Core-core repulsion = 20838.203783 eV Total energy + Delta-G solvation = -3608.258045 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65497 -40.19281 -38.64424 -37.41536 -36.10080 -35.40399 -34.36189 -32.36198 -31.97441 -29.89731 -29.27119 -27.12052 -24.35017 -23.78803 -23.05974 -22.04745 -21.48622 -20.86284 -19.94066 -18.52099 -18.06776 -17.45518 -17.29346 -16.55208 -16.24170 -15.98973 -15.59827 -15.42795 -15.00923 -14.68123 -14.48432 -14.43379 -14.33541 -14.20660 -14.03363 -13.96309 -13.34056 -13.04324 -12.72183 -12.63218 -12.57701 -12.48316 -12.32996 -12.16139 -11.91814 -11.76749 -11.63644 -11.30709 -10.91717 -10.88282 -10.57477 -10.16378 -10.01334 -9.71218 -9.56161 -8.38545 -6.44988 0.07248 0.31731 1.15571 1.34222 1.36318 1.49278 1.83555 2.23259 2.29698 2.61576 2.88706 2.97446 3.46297 3.49484 3.80071 3.92206 3.97890 4.02235 4.16199 4.33052 4.37724 4.47880 4.56849 4.62917 4.71809 4.81027 4.89136 4.93859 4.97732 4.99481 5.08441 5.16339 5.22607 5.24999 5.27485 5.29390 5.41341 5.51914 5.65803 5.66800 5.77880 5.98536 6.28801 6.57452 7.15694 7.27147 7.70449 8.76249 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.014759 B = 0.002945 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.743700 B = 9506.175783 C =10725.237659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.178 4.178 3 H 0.094 0.906 4 C -0.164 4.164 5 C -0.147 4.147 6 H 0.126 0.874 7 C 0.237 3.763 8 H 0.083 0.917 9 N -0.727 5.727 10 C 0.700 3.300 11 O -0.628 6.628 12 N -0.723 5.723 13 C 0.255 3.745 14 C -0.544 4.544 15 H 0.058 0.942 16 C 0.026 3.974 17 N -0.932 5.932 18 Si 0.937 3.063 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.083 4.083 23 C -0.097 4.097 24 C -0.110 4.110 25 C -0.044 4.044 26 Cl -0.073 7.073 27 C -0.109 4.109 28 C -0.097 4.097 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.407 0.593 35 H 0.403 0.597 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.272 0.728 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.995 -20.779 14.103 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.196 4.196 3 H 0.112 0.888 4 C -0.201 4.201 5 C -0.166 4.166 6 H 0.144 0.856 7 C 0.132 3.868 8 H 0.101 0.899 9 N -0.385 5.385 10 C 0.400 3.600 11 O -0.510 6.510 12 N -0.376 5.376 13 C 0.130 3.870 14 C -0.582 4.582 15 H 0.076 0.924 16 C -0.174 4.174 17 N -0.571 5.571 18 Si 0.761 3.239 19 H -0.191 1.191 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.084 4.084 23 C -0.115 4.115 24 C -0.128 4.128 25 C -0.071 4.071 26 Cl -0.045 7.045 27 C -0.128 4.128 28 C -0.116 4.116 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.244 0.756 35 H 0.238 0.762 36 H 0.028 0.972 37 H 0.026 0.974 38 H 0.081 0.919 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.558 -20.046 14.479 26.888 hybrid contribution 0.634 0.326 -0.448 0.842 sum -9.924 -19.721 14.030 26.158 Atomic orbital electron populations 1.21300 0.91884 1.01906 1.01961 1.22803 0.96123 0.95573 1.05146 0.88769 1.23080 1.02352 1.01260 0.93457 1.22790 0.97700 1.01960 0.94158 0.85623 1.19047 0.85873 0.92915 0.88947 0.89919 1.45076 1.38819 1.07573 1.46988 1.16093 0.81272 0.82840 0.79822 1.90794 1.43414 1.56066 1.60703 1.45125 1.36389 1.11887 1.44237 1.18900 0.95669 0.78775 0.93618 1.21284 1.16654 0.96436 1.23820 0.92355 1.25576 0.96160 1.01292 0.94345 1.69984 1.32969 1.24180 1.29978 0.85864 0.80199 0.79257 0.78603 1.19072 1.19949 1.18343 1.19860 0.98913 0.95341 0.94272 1.21049 0.96965 0.92710 1.00809 1.21227 1.00194 0.98788 0.92608 1.21140 1.01563 0.90658 0.93724 1.98377 1.86245 1.39533 1.80306 1.21219 0.97519 0.92838 1.01223 1.21159 0.99209 0.97764 0.93428 0.91771 0.93095 0.91500 0.90003 0.87612 0.75624 0.76220 0.97178 0.97398 0.91895 0.83903 0.83397 0.83271 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 10.19 71.98 0.73 -1.72 16 2 C -0.18 -4.79 5.70 -10.77 -0.06 -4.85 16 3 H 0.09 3.42 5.01 -2.38 -0.01 3.40 16 4 C -0.16 -3.77 9.38 30.62 0.29 -3.48 16 5 C -0.15 -3.13 5.40 -10.79 -0.06 -3.19 16 6 H 0.13 2.21 8.11 -2.39 -0.02 2.19 16 7 C 0.24 5.32 2.63 44.25 0.12 5.44 16 8 H 0.08 2.21 7.44 -2.39 -0.02 2.19 16 9 N -0.73 -18.63 3.57 -461.41 -1.65 -20.28 16 10 C 0.70 25.45 7.40 179.06 1.33 26.78 16 11 O -0.63 -27.39 13.37 -3.99 -0.05 -27.44 16 12 N -0.72 -28.53 5.55 -482.31 -2.68 -31.21 16 13 C 0.25 12.43 4.50 85.63 0.38 12.81 16 14 C -0.54 -29.88 9.83 25.60 0.25 -29.63 16 15 H 0.06 3.36 7.84 -2.91 -0.02 3.34 16 16 C 0.03 1.49 5.47 84.65 0.46 1.96 16 17 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 18 Si 0.94 44.09 27.47 68.60 1.88 45.97 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 22 C -0.08 -1.45 4.93 -19.86 -0.10 -1.55 16 23 C -0.10 -1.49 9.05 22.27 0.20 -1.28 16 24 C -0.11 -1.61 9.83 22.29 0.22 -1.39 16 25 C -0.04 -0.69 6.32 22.32 0.14 -0.55 16 26 Cl -0.07 -1.12 28.96 -2.72 -0.08 -1.20 16 27 C -0.11 -1.60 9.83 22.29 0.22 -1.38 16 28 C -0.10 -1.51 9.67 22.26 0.22 -1.30 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.20 7.90 -2.39 -0.02 1.18 16 32 H 0.08 2.10 6.67 -2.39 -0.02 2.09 16 33 H 0.11 2.02 8.05 -2.39 -0.02 2.00 16 34 H 0.41 8.27 6.90 -92.71 -0.64 7.63 16 35 H 0.40 13.95 8.34 -92.70 -0.77 13.18 16 36 H 0.01 0.53 7.20 -2.38 -0.02 0.51 16 37 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.14 1.82 6.93 -2.91 -0.02 1.80 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.15 1.89 8.04 -2.91 -0.02 1.87 16 Total: -1.00 -67.21 360.46 1.66 -65.55 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.41 Total: 27.28 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 4.34 Total: -3.34 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -4.02 Total: -106.82 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.97 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -67.21 1.66 -65.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426445084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.884 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds