Wall clock time and date at job start Sat Apr 11 2020 00:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48494 * 109.47494 * 270.00561 * 3 2 1 5 5 H 1.48508 * 109.46676 * 30.00535 * 3 2 1 6 6 H 1.48502 * 109.46977 * 149.99833 * 3 2 1 7 7 C 1.37878 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47238 * 179.97438 * 12 11 10 14 14 N 1.31128 * 126.54788 * 89.99940 * 13 12 11 15 15 C 1.34491 * 105.61248 * 180.02562 * 14 13 12 16 16 C 1.50702 * 126.28727 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46831 * 90.00326 * 16 15 14 18 18 C 1.38229 * 119.98708 * 100.00046 * 17 16 15 19 19 C 1.38186 * 120.05606 * 179.97438 * 18 17 16 20 20 C 1.38500 * 120.02002 * 0.02578 * 19 18 17 21 21 F 1.35097 * 120.01398 * 179.97438 * 20 19 18 22 22 C 1.38394 * 119.97726 * 359.97438 * 20 19 18 23 23 C 1.38449 * 119.94949 * 359.72641 * 22 20 19 24 24 F 1.35092 * 120.01769 * 180.26967 * 23 22 20 25 25 N 1.29946 * 107.42970 * 0.02562 * 15 14 13 26 26 O 1.21309 * 110.24521 * 359.70291 * 25 15 14 27 27 H 0.96999 * 120.00397 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 29 29 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 30 30 H 1.08992 * 109.47056 * 59.99637 * 10 9 7 31 31 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 33 33 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 34 34 H 1.09001 * 109.46832 * 59.99979 * 12 11 10 35 35 H 1.09000 * 109.47611 * 300.00276 * 12 11 10 36 36 H 1.08998 * 109.47458 * 210.00253 * 16 15 14 37 37 H 1.09000 * 109.47577 * 330.00483 * 16 15 14 38 38 H 1.08006 * 119.97491 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.99546 * 180.02562 * 19 18 17 40 40 H 1.07993 * 120.02835 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6621 -0.0005 11 6 1.4805 -4.9871 0.0001 12 6 2.4748 -6.1499 -0.0005 13 6 1.7214 -7.4551 0.0007 14 7 1.3299 -8.1318 -1.0520 15 6 0.7019 -9.2192 -0.5704 16 6 0.0669 -10.3165 -1.3852 17 6 1.0854 -11.3932 -1.6580 18 6 1.0915 -12.5472 -0.8971 19 6 2.0244 -13.5356 -1.1463 20 6 2.9550 -13.3707 -2.1588 21 9 3.8674 -14.3369 -2.4020 22 6 2.9499 -12.2157 -2.9213 23 6 2.0108 -11.2288 -2.6747 24 9 2.0011 -10.1033 -3.4217 25 7 0.7423 -9.1495 0.7265 26 8 1.3285 -8.1462 1.0750 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 2.8721 -3.6042 0.8894 31 1 2.8720 -3.6042 -0.8905 32 1 0.8536 -5.0451 -0.8896 33 1 0.8542 -5.0446 0.8904 34 1 3.1021 -6.0920 0.8890 35 1 3.1009 -6.0922 -0.8909 36 1 -0.7713 -10.7408 -0.8326 37 1 -0.2908 -9.9070 -2.3299 38 1 0.3665 -12.6765 -0.1071 39 1 2.0280 -14.4370 -0.5515 40 1 3.6749 -12.0865 -3.7112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589089123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:05 Heat of formation + Delta-G solvation = -24.328710 kcal Electronic energy + Delta-G solvation = -25217.443444 eV Core-core repulsion = 21056.666179 eV Total energy + Delta-G solvation = -4160.777265 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.123 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.47497 -49.30237 -45.61177 -39.51607 -36.34338 -35.80376 -33.81818 -32.78090 -31.72636 -31.28154 -29.40844 -27.81785 -25.80091 -23.94729 -23.61867 -22.99200 -22.15454 -20.93623 -20.18330 -18.63997 -18.10436 -17.68678 -17.43995 -16.45655 -16.36150 -16.22046 -15.88207 -15.71673 -15.19654 -14.97644 -14.83732 -14.47594 -14.40638 -14.24010 -13.58012 -13.03086 -12.92295 -12.71020 -12.58397 -12.31241 -12.17682 -12.07290 -11.88166 -11.70733 -11.39461 -11.07984 -11.00993 -10.66176 -10.58819 -10.54724 -9.99205 -9.71677 -9.58704 -9.31509 -9.15164 -9.05119 -8.34784 -5.99738 -4.02262 0.36535 0.50283 1.11421 2.13992 2.77113 2.83148 3.32251 3.38561 3.38779 3.41573 3.56449 3.85208 3.92238 4.07613 4.11719 4.34716 4.45990 4.59009 4.81542 4.98463 5.13130 5.20027 5.22437 5.29322 5.31644 5.36195 5.41209 5.51061 5.54863 5.68077 5.79551 5.87577 6.01770 6.06468 6.24204 6.34336 6.67448 6.82494 7.09788 7.67568 7.81360 8.00236 8.11184 8.42160 9.05113 9.61897 11.11554 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.001917 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.008523 B =14601.324447 C =14936.912078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.115 4.115 12 C -0.031 4.031 13 C 0.200 3.800 14 N -0.478 5.478 15 C 0.167 3.833 16 C 0.016 3.984 17 C -0.135 4.135 18 C -0.047 4.047 19 C -0.166 4.166 20 C 0.133 3.867 21 F -0.131 7.131 22 C -0.195 4.195 23 C 0.150 3.850 24 F -0.115 7.115 25 N -0.385 5.385 26 O 0.076 5.924 27 H 0.260 0.740 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 -29.334 -2.918 29.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.070 4.070 13 C -0.020 4.020 14 N -0.211 5.211 15 C -0.106 4.106 16 C -0.022 4.022 17 C -0.137 4.137 18 C -0.065 4.065 19 C -0.185 4.185 20 C 0.113 3.887 21 F -0.109 7.109 22 C -0.215 4.215 23 C 0.130 3.870 24 F -0.093 7.093 25 N -0.093 5.093 26 O 0.017 5.983 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.472 -29.903 -2.869 30.141 hybrid contribution 0.688 1.097 -0.185 1.308 sum 3.159 -28.805 -3.054 29.139 Atomic orbital electron populations 1.69964 1.06064 1.26590 1.50877 1.25039 0.94854 0.99298 0.95380 0.86599 0.79833 0.83500 0.78087 1.20684 1.21267 1.19873 1.21259 0.93047 0.91080 1.50516 0.92630 1.19104 0.94030 0.91295 0.97314 1.21632 0.99181 0.93059 1.00750 1.21733 0.97496 0.93312 1.02810 1.20554 0.97197 0.83471 1.05811 1.29186 0.95407 0.97298 0.80073 1.71965 1.15476 1.04894 1.28788 1.25454 1.00209 0.96485 0.88424 1.18714 0.95006 0.88445 1.00069 1.19734 0.99037 0.97389 0.97518 1.20848 0.97363 0.90962 0.97341 1.21202 0.96393 1.01821 0.99069 1.17345 0.88999 0.86132 0.96191 1.91544 1.64575 1.61208 1.93583 1.21074 1.02396 0.93841 1.04190 1.17182 0.95386 0.83358 0.91080 1.91615 1.95467 1.48072 1.74131 1.74589 1.15377 1.03953 1.15426 1.85292 1.51964 1.25016 1.36007 0.93016 0.96562 0.96565 0.92908 0.92902 0.91446 0.91653 0.88075 0.87254 0.87353 0.87084 0.83558 0.83720 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 10 C -0.11 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.11 -1.77 5.20 -26.73 -0.14 -1.91 16 12 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16 13 C 0.20 2.70 7.77 -13.05 -0.10 2.60 16 14 N -0.48 -6.84 11.55 -9.87 -0.11 -6.95 16 15 C 0.17 2.14 7.45 -156.37 -1.16 0.97 16 16 C 0.02 0.15 5.70 -29.03 -0.17 -0.02 16 17 C -0.13 -1.17 5.13 -104.55 -0.54 -1.71 16 18 C -0.05 -0.32 9.66 -39.60 -0.38 -0.70 16 19 C -0.17 -1.10 10.03 -39.50 -0.40 -1.49 16 20 C 0.13 1.07 7.30 -39.43 -0.29 0.78 16 21 F -0.13 -1.12 17.27 2.25 0.04 -1.08 16 22 C -0.20 -1.66 10.01 -39.45 -0.39 -2.05 16 23 C 0.15 1.45 7.24 -39.42 -0.29 1.17 16 24 F -0.11 -1.32 16.65 2.25 0.04 -1.29 16 25 N -0.39 -5.26 12.16 30.90 0.38 -4.88 16 26 O 0.08 1.04 11.31 18.11 0.20 1.25 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.11 0.72 8.00 -51.93 -0.42 0.31 16 37 H 0.11 0.96 7.94 -51.93 -0.41 0.55 16 38 H 0.15 0.67 8.04 -52.48 -0.42 0.25 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 360.36 15.07 5.43 5.43 Total: -1.00 -32.16 360.36 -8.03 -40.19 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: -5.02 Total: -4.95 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -4.70 Total: -18.08 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 1.00 Total: -37.96 kcal Atomic # 8 Polarization: 1.04 SS G_CDS: 0.20 Total: 1.25 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.08 Total: -2.36 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.16 -8.03 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589089123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.866 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds