Wall clock time and date at job start Sat Apr 11 2020 00:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99816 * 2 1 4 4 H 1.48494 * 109.47494 * 270.00561 * 3 2 1 5 5 H 1.48508 * 109.46676 * 30.00535 * 3 2 1 6 6 H 1.48502 * 109.46977 * 149.99833 * 3 2 1 7 7 C 1.37878 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46891 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47238 * 179.97438 * 12 11 10 14 14 N 1.31128 * 126.54788 * 89.99940 * 13 12 11 15 15 C 1.34491 * 105.61248 * 180.02562 * 14 13 12 16 16 C 1.50702 * 126.28727 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46831 * 90.00326 * 16 15 14 18 18 C 1.38229 * 119.98708 * 100.00046 * 17 16 15 19 19 C 1.38186 * 120.05606 * 179.97438 * 18 17 16 20 20 C 1.38500 * 120.02002 * 0.02578 * 19 18 17 21 21 F 1.35097 * 120.01398 * 179.97438 * 20 19 18 22 22 C 1.38394 * 119.97726 * 359.97438 * 20 19 18 23 23 C 1.38449 * 119.94949 * 359.72641 * 22 20 19 24 24 F 1.35092 * 120.01769 * 180.26967 * 23 22 20 25 25 N 1.29946 * 107.42970 * 0.02562 * 15 14 13 26 26 O 1.21309 * 110.24521 * 359.70291 * 25 15 14 27 27 H 0.96999 * 120.00397 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46836 * 59.99719 * 9 7 2 29 29 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 30 30 H 1.08992 * 109.47056 * 59.99637 * 10 9 7 31 31 H 1.08996 * 109.46698 * 299.99753 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99964 * 11 10 9 33 33 H 1.09004 * 109.47108 * 299.99708 * 11 10 9 34 34 H 1.09001 * 109.46832 * 59.99979 * 12 11 10 35 35 H 1.09000 * 109.47611 * 300.00276 * 12 11 10 36 36 H 1.08998 * 109.47458 * 210.00253 * 16 15 14 37 37 H 1.09000 * 109.47577 * 330.00483 * 16 15 14 38 38 H 1.08006 * 119.97491 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.99546 * 180.02562 * 19 18 17 40 40 H 1.07993 * 120.02835 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6621 -0.0005 11 6 1.4805 -4.9871 0.0001 12 6 2.4748 -6.1499 -0.0005 13 6 1.7214 -7.4551 0.0007 14 7 1.3299 -8.1318 -1.0520 15 6 0.7019 -9.2192 -0.5704 16 6 0.0669 -10.3165 -1.3852 17 6 1.0854 -11.3932 -1.6580 18 6 1.0915 -12.5472 -0.8971 19 6 2.0244 -13.5356 -1.1463 20 6 2.9550 -13.3707 -2.1588 21 9 3.8674 -14.3369 -2.4020 22 6 2.9499 -12.2157 -2.9213 23 6 2.0108 -11.2288 -2.6747 24 9 2.0011 -10.1033 -3.4217 25 7 0.7423 -9.1495 0.7265 26 8 1.3285 -8.1462 1.0750 27 1 -0.4851 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6249 -2.5571 0.8897 30 1 2.8721 -3.6042 0.8894 31 1 2.8720 -3.6042 -0.8905 32 1 0.8536 -5.0451 -0.8896 33 1 0.8542 -5.0446 0.8904 34 1 3.1021 -6.0920 0.8890 35 1 3.1009 -6.0922 -0.8909 36 1 -0.7713 -10.7408 -0.8326 37 1 -0.2908 -9.9070 -2.3299 38 1 0.3665 -12.6765 -0.1071 39 1 2.0280 -14.4370 -0.5515 40 1 3.6749 -12.0865 -3.7112 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589089123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:04 Heat of formation + Delta-G solvation = -42.080950 kcal Electronic energy + Delta-G solvation = -25218.213239 eV Core-core repulsion = 21056.666179 eV Total energy + Delta-G solvation = -4161.547060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.123 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.10358 -50.06365 -46.62217 -40.12081 -37.45922 -36.99382 -35.29850 -34.14002 -32.90778 -31.88000 -30.92438 -28.54183 -27.48694 -25.01792 -24.28641 -24.26421 -23.14387 -21.93428 -21.76914 -19.30361 -19.12546 -18.51929 -18.36754 -18.25717 -17.12502 -16.98607 -16.61712 -16.53310 -16.43185 -16.36615 -15.92248 -15.51508 -15.27636 -14.94751 -14.63330 -14.30218 -14.20410 -13.71515 -13.68913 -13.43338 -13.30065 -13.19118 -12.93330 -12.81495 -12.53562 -12.43261 -12.28530 -12.20843 -12.15704 -12.01993 -11.36579 -11.35365 -11.18385 -10.78753 -10.52114 -10.18146 -9.78657 -8.17062 -6.27751 -0.26420 -0.08386 0.09509 1.15524 1.42532 1.43641 1.54654 1.79880 2.16770 2.43544 2.70275 2.76928 2.98186 3.16410 3.30177 3.45734 3.49799 3.80304 3.87813 4.03115 4.05031 4.10073 4.31801 4.37095 4.56292 4.64987 4.70329 4.73190 4.79600 4.81127 4.86747 4.90703 4.94320 4.95862 5.11575 5.18193 5.32942 5.34103 5.58985 5.65181 5.82064 5.91605 6.28649 6.90976 7.09717 7.41638 8.94765 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.001917 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.008523 B =14601.324447 C =14936.912078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.104 4.104 12 C -0.021 4.021 13 C 0.200 3.800 14 N -0.501 5.501 15 C 0.168 3.832 16 C 0.015 3.985 17 C -0.140 4.140 18 C -0.042 4.042 19 C -0.156 4.156 20 C 0.123 3.877 21 F -0.135 7.135 22 C -0.201 4.201 23 C 0.126 3.874 24 F -0.132 7.132 25 N -0.396 5.396 26 O 0.067 5.933 27 H 0.262 0.738 28 H -0.013 1.013 29 H -0.009 1.009 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.111 0.889 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -30.485 -2.211 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.143 4.143 12 C -0.059 4.059 13 C -0.020 4.020 14 N -0.235 5.235 15 C -0.105 4.105 16 C -0.024 4.024 17 C -0.142 4.142 18 C -0.059 4.059 19 C -0.174 4.174 20 C 0.104 3.896 21 F -0.114 7.114 22 C -0.220 4.220 23 C 0.107 3.893 24 F -0.111 7.111 25 N -0.106 5.106 26 O 0.011 5.989 27 H 0.071 0.929 28 H 0.005 0.995 29 H 0.009 0.991 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.129 0.871 38 H 0.191 0.809 39 H 0.189 0.811 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.643 -31.061 -2.155 31.348 hybrid contribution 0.291 1.390 -0.413 1.479 sum 3.934 -29.671 -2.568 30.041 Atomic orbital electron populations 1.70107 1.07881 1.27639 1.52053 1.26025 0.95763 1.03516 0.94986 0.85452 0.78757 0.78470 0.78397 1.19950 1.21059 1.18422 1.21768 0.93767 0.92332 1.49910 0.91688 1.19060 0.94691 0.93474 0.94645 1.21418 0.97935 0.92191 1.01796 1.21493 0.97700 0.93104 1.01989 1.20482 0.96244 0.81355 1.07863 1.29343 0.95165 0.97542 0.79979 1.71991 1.16207 1.05820 1.29482 1.26057 0.99345 0.96631 0.88449 1.18921 0.95700 0.87766 0.99967 1.19813 0.98787 0.97971 0.97641 1.21162 0.97599 0.89953 0.97233 1.21521 0.95164 1.02515 0.98235 1.17507 0.89444 0.85920 0.96753 1.91534 1.64853 1.61287 1.93694 1.21166 1.02354 0.93933 1.04564 1.17426 0.96608 0.83352 0.91946 1.91565 1.95700 1.49061 1.74743 1.74573 1.15985 1.04185 1.15832 1.85271 1.52216 1.25246 1.36138 0.92935 0.99489 0.99103 0.91478 0.92090 0.92905 0.92028 0.85303 0.86022 0.84708 0.87114 0.80893 0.81104 0.82633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 13.29 21.45 0.28 -57.02 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.54 -30.21 9.11 25.60 0.23 -29.97 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.54 5.15 30.59 0.16 -3.38 16 11 C -0.10 -3.15 5.20 30.59 0.16 -2.99 16 12 C -0.02 -0.47 5.84 29.85 0.17 -0.29 16 13 C 0.20 5.17 7.77 88.38 0.69 5.86 16 14 N -0.50 -14.06 11.55 -303.20 -3.50 -17.57 16 15 C 0.17 4.14 7.45 138.46 1.03 5.17 16 16 C 0.01 0.25 5.70 29.10 0.17 0.41 16 17 C -0.14 -2.25 5.13 -19.81 -0.10 -2.35 16 18 C -0.04 -0.46 9.66 22.26 0.22 -0.24 16 19 C -0.16 -1.66 10.03 22.32 0.22 -1.44 16 20 C 0.12 1.81 7.30 22.37 0.16 1.97 16 21 F -0.14 -2.15 17.27 44.97 0.78 -1.37 16 22 C -0.20 -3.32 10.01 22.36 0.22 -3.09 16 23 C 0.13 2.41 7.24 22.37 0.16 2.57 16 24 F -0.13 -3.12 16.65 44.97 0.75 -2.37 16 25 N -0.40 -10.33 12.16 -60.32 -0.73 -11.06 16 26 O 0.07 1.79 11.31 74.86 0.85 2.63 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.13 2.20 8.14 -2.39 -0.02 2.19 16 35 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.13 1.49 8.00 -2.39 -0.02 1.47 16 37 H 0.11 1.86 7.94 -2.39 -0.02 1.84 16 38 H 0.17 0.94 8.04 -2.91 -0.02 0.92 16 39 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 40 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -70.52 360.36 5.62 -64.90 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: 1.06 Total: 2.36 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 4.10 Total: -26.53 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -3.95 Total: -85.65 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.85 Total: 2.63 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 1.53 Total: -3.74 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -70.52 5.62 -64.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589089123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.819 kcal (2) G-P(sol) polarization free energy of solvation -70.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds