Wall clock time and date at job start Sat Apr 11 2020 00:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86801 * 119.99902 * 2 1 4 4 H 1.48497 * 109.47471 * 274.98728 * 3 2 1 5 5 H 1.48508 * 109.47092 * 34.98718 * 3 2 1 6 6 H 1.48499 * 109.47100 * 154.98239 * 3 2 1 7 7 C 1.39889 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 147.61335 * 7 2 1 9 9 C 1.41160 * 120.00192 * 327.61338 * 7 2 1 10 10 C 1.40864 * 120.16672 * 157.99940 * 9 7 2 11 11 C 1.36368 * 119.82925 * 180.02562 * 10 9 7 12 12 C 1.39475 * 120.17085 * 0.02562 * 11 10 9 13 13 N 1.39246 * 119.83630 * 180.02562 * 12 11 10 14 14 C 1.34779 * 120.00086 * 142.46742 * 13 12 11 15 15 O 1.21578 * 119.99990 * 3.00713 * 14 13 12 16 16 N 1.34770 * 119.99579 * 183.00806 * 14 13 12 17 17 C 1.47298 * 135.89124 * 359.62990 * 16 14 13 18 18 C 1.52599 * 87.55185 * 154.00583 * 17 16 14 19 19 C 1.52622 * 121.93965 * 150.04171 * 18 17 16 20 20 C 1.54008 * 86.67420 * 102.92977 * 19 18 17 21 21 C 1.52624 * 122.22250 * 260.73105 * 18 17 16 22 22 F 1.39899 * 113.67718 * 11.74770 * 21 18 17 23 23 F 1.39899 * 113.67702 * 142.85141 * 21 18 17 24 24 C 1.47297 * 135.88595 * 179.97438 * 16 14 13 25 25 C 1.39480 * 120.33244 * 0.27087 * 12 11 10 26 26 C 1.36376 * 120.16749 * 359.44690 * 25 12 11 27 27 H 0.97003 * 120.00471 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.08782 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.91698 * 179.97438 * 11 10 9 30 30 H 0.96999 * 119.99446 * 322.18618 * 13 12 11 31 31 H 1.09001 * 113.52058 * 268.65263 * 17 16 14 32 32 H 1.08994 * 113.52452 * 39.26532 * 17 16 14 33 33 H 1.09001 * 113.67475 * 217.37553 * 19 18 17 34 34 H 1.08997 * 113.68166 * 348.48211 * 19 18 17 35 35 H 1.08992 * 113.56702 * 269.87869 * 20 19 18 36 36 H 1.09001 * 113.63765 * 139.13021 * 20 19 18 37 37 H 1.08994 * 113.52711 * 320.73382 * 24 16 14 38 38 H 1.09002 * 113.52072 * 91.35010 * 24 16 14 39 39 H 1.07996 * 119.91912 * 179.70875 * 25 12 11 40 40 H 1.07999 * 120.09083 * 180.26599 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1074 -1.3947 5 1 1.4968 2.6200 0.8028 6 1 3.5890 1.4121 0.5921 7 6 2.0082 -1.2115 -0.0005 8 1 2.9622 -1.2840 -0.5015 9 6 1.4672 -2.3392 0.6537 10 6 1.8861 -3.6350 0.2938 11 6 1.3585 -4.7197 0.9301 12 6 0.4060 -4.5485 1.9345 13 7 -0.1277 -5.6609 2.5799 14 6 -0.3930 -5.6110 3.9004 15 8 -0.2178 -4.5780 4.5170 16 7 -0.8525 -6.7063 4.5372 17 6 -1.1881 -8.0888 4.1554 18 6 -0.8945 -8.4891 5.5984 19 6 -1.6043 -9.6604 6.2718 20 6 -0.3079 -10.4601 6.0449 21 6 0.4351 -9.1114 6.0159 22 9 1.4248 -9.0362 5.0299 23 9 0.8831 -8.6894 7.2722 24 6 -1.2439 -7.0411 5.9172 25 6 -0.0183 -3.2689 2.2921 26 6 0.5044 -2.1743 1.6688 27 1 -0.4851 0.8400 -0.0004 28 1 2.6233 -3.7693 -0.4840 29 1 1.6784 -5.7139 0.6549 30 1 -0.3124 -6.4703 2.0783 31 1 -2.2322 -8.2204 3.8713 32 1 -0.4956 -8.5210 3.4331 33 1 -1.8336 -9.4873 7.3233 34 1 -2.4566 -10.0388 5.7074 35 1 -0.2843 -10.9912 5.0934 36 1 -0.0309 -11.0921 6.8887 37 1 -0.5982 -6.5941 6.6731 38 1 -2.3034 -6.8836 6.1192 39 1 -0.7596 -3.1443 3.0675 40 1 0.1781 -1.1839 1.9497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589316777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:10 Heat of formation + Delta-G solvation = -33.074540 kcal Electronic energy + Delta-G solvation = -26621.559959 eV Core-core repulsion = 22460.403446 eV Total energy + Delta-G solvation = -4161.156512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.123 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.05059 -47.36909 -40.93414 -39.07939 -37.19675 -35.61310 -34.36791 -32.94352 -29.65938 -29.35700 -28.05034 -26.45831 -25.50899 -24.80745 -23.37834 -21.30521 -20.89315 -19.74190 -19.14299 -17.94398 -17.85580 -17.29451 -16.88363 -16.44107 -16.32339 -15.62023 -15.19127 -14.84409 -14.78160 -14.16802 -14.05542 -13.89907 -13.79275 -13.65426 -13.39033 -12.93032 -12.81532 -12.64866 -12.26639 -12.03230 -11.95652 -11.72805 -11.50003 -11.29863 -11.12413 -11.08477 -11.02176 -10.79197 -10.62591 -10.06516 -9.63795 -9.46929 -8.97120 -8.87426 -8.67510 -7.47717 -7.09607 -6.79362 -4.22075 2.52458 2.77367 3.02732 3.08973 3.10626 3.14656 3.23581 3.35761 3.46977 3.68488 3.93879 3.95358 3.98812 4.24518 4.53013 4.57397 4.60504 4.99888 5.09269 5.10238 5.11075 5.23832 5.29059 5.37770 5.48406 5.61896 5.63173 5.74339 6.20906 6.44794 6.85306 6.99395 7.07293 7.14179 7.34549 7.40312 7.66021 7.89272 8.02643 8.09968 8.28588 8.49193 8.63564 8.89531 8.95999 9.16158 10.08422 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.030705 B = 0.002562 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.695578 B =10927.181033 C =11071.803499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.081 0.919 9 C 0.111 3.889 10 C -0.222 4.222 11 C -0.095 4.095 12 C -0.002 4.002 13 N -0.659 5.659 14 C 0.728 3.272 15 O -0.571 6.571 16 N -0.669 5.669 17 C 0.135 3.865 18 C -0.165 4.165 19 C -0.112 4.112 20 C -0.161 4.161 21 C 0.285 3.715 22 F -0.184 7.184 23 F -0.174 7.174 24 C 0.146 3.854 25 C -0.074 4.074 26 C -0.172 4.172 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.389 0.611 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 -20.209 9.960 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.099 0.901 9 C 0.109 3.891 10 C -0.242 4.242 11 C -0.116 4.116 12 C -0.094 4.094 13 N -0.304 5.304 14 C 0.432 3.568 15 O -0.447 6.447 16 N -0.411 5.411 17 C 0.011 3.989 18 C -0.167 4.167 19 C -0.150 4.150 20 C -0.199 4.199 21 C 0.248 3.752 22 F -0.164 7.164 23 F -0.155 7.155 24 C 0.022 3.978 25 C -0.094 4.094 26 C -0.192 4.192 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.222 0.778 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.974 -19.042 10.278 22.448 hybrid contribution 0.415 0.441 -0.236 0.650 sum -5.559 -18.601 10.042 21.857 Atomic orbital electron populations 1.69948 1.08094 1.29840 1.31257 1.25930 0.94350 1.01502 0.91612 0.86519 0.81555 0.80956 0.79083 1.19522 1.19896 1.18116 1.19472 1.05359 0.93830 1.30792 0.90080 1.17589 0.89998 0.91771 0.89784 1.20444 1.06956 0.92267 1.04493 1.20022 0.96232 0.97294 0.98038 1.16873 1.04324 0.85241 1.02981 1.41949 1.66477 1.16161 1.05859 1.15313 0.78424 0.81327 0.81769 1.90932 1.59377 1.28280 1.66090 1.48706 1.70400 1.10460 1.11508 1.22484 1.01603 0.81311 0.93509 1.23924 0.95189 0.97153 1.00468 1.22565 0.97123 0.93149 1.02178 1.24074 0.94981 0.95154 1.05677 1.21541 0.82790 0.97187 0.73637 1.93041 1.65350 1.96961 1.61066 1.93026 1.90614 1.91334 1.40526 1.22411 1.01073 0.88928 0.85353 1.20406 0.98999 0.91398 0.98645 1.20706 1.02657 0.96910 0.98886 0.90621 0.88649 0.89324 0.77837 0.88519 0.89744 0.88040 0.88524 0.86840 0.88537 0.89767 0.88931 0.88039 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.16 11.77 55.54 0.65 -19.50 16 2 C 0.09 2.24 4.77 -17.34 -0.08 2.16 16 3 Si 0.90 18.83 29.66 -169.99 -5.04 13.79 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.47 -12.62 8.94 -37.86 -0.34 -12.96 16 8 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 9 C 0.11 3.07 5.57 -106.80 -0.60 2.47 16 10 C -0.22 -5.56 9.74 -39.26 -0.38 -5.95 16 11 C -0.10 -2.20 9.90 -39.79 -0.39 -2.60 16 12 C 0.00 -0.05 6.25 -83.57 -0.52 -0.57 16 13 N -0.66 -12.80 5.30 -14.10 -0.07 -12.88 16 14 C 0.73 14.48 8.60 -86.92 -0.75 13.73 16 15 O -0.57 -14.00 14.74 5.30 0.08 -13.92 16 16 N -0.67 -9.60 3.69 -190.54 -0.70 -10.31 16 17 C 0.13 1.21 7.87 -7.47 -0.06 1.15 16 18 C -0.17 -1.36 1.23 -155.47 -0.19 -1.56 16 19 C -0.11 -0.50 7.89 -26.40 -0.21 -0.71 16 20 C -0.16 -0.85 7.87 -25.70 -0.20 -1.05 16 21 C 0.29 2.79 3.20 -26.40 -0.08 2.71 16 22 F -0.18 -2.34 16.86 2.25 0.04 -2.30 16 23 F -0.17 -2.02 17.21 2.25 0.04 -1.98 16 24 C 0.15 1.61 8.33 -7.60 -0.06 1.55 16 25 C -0.07 -1.95 8.59 -39.79 -0.34 -2.29 16 26 C -0.17 -4.75 8.74 -39.26 -0.34 -5.09 16 27 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 28 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 29 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.39 6.07 8.53 -40.82 -0.35 5.72 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 2.69 6.46 -52.49 -0.34 2.35 16 40 H 0.11 3.00 6.52 -52.49 -0.34 2.66 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -33.91 346.73 -9.13 -43.04 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.79 Total: 7.84 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -4.56 Total: -9.00 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.12 Total: -42.69 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.08 Total: -13.92 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.08 Total: -4.29 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.04 Total: 13.79 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.91 -9.13 -43.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589316777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.968 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds