Wall clock time and date at job start Sat Apr 11 2020 00:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48494 * 109.47321 * 272.88387 * 3 2 1 5 5 H 1.48501 * 109.47194 * 32.88966 * 3 2 1 6 6 H 1.48509 * 109.46983 * 152.88190 * 3 2 1 7 7 C 1.38813 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99777 * 339.35225 * 7 2 1 9 9 N 1.36940 * 119.99903 * 159.34992 * 7 2 1 10 10 C 1.46921 * 120.63187 * 332.62203 * 9 7 2 11 11 C 1.53190 * 108.89311 * 233.51481 * 10 9 7 12 12 C 1.53081 * 109.29209 * 305.57883 * 11 10 9 13 13 N 1.46499 * 109.45080 * 181.24433 * 12 11 10 14 14 C 1.34781 * 119.99981 * 84.78441 * 13 12 11 15 15 O 1.21616 * 119.99922 * 0.02562 * 14 13 12 16 16 C 1.47173 * 119.99625 * 179.97438 * 14 13 12 17 17 S 1.77337 * 128.47921 * 0.02614 * 16 14 13 18 18 N 1.56638 * 95.28124 * 179.97438 * 17 16 14 19 19 N 1.27327 * 109.74458 * 0.02562 * 18 17 16 20 20 C 1.31247 * 120.03595 * 359.71667 * 19 18 17 21 21 C 1.50701 * 124.05157 * 180.33991 * 20 19 18 22 22 C 1.52994 * 117.50324 * 8.91825 * 21 20 19 23 23 C 1.52997 * 117.49978 * 300.25324 * 21 20 19 24 24 C 1.53035 * 109.65990 * 61.15476 * 12 11 10 25 25 C 1.46923 * 120.62634 * 152.59432 * 9 7 2 26 26 H 0.97001 * 119.99914 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.58764 * 353.37473 * 10 9 7 28 28 H 1.09004 * 109.58573 * 113.65412 * 10 9 7 29 29 H 1.08992 * 109.50042 * 65.38545 * 11 10 9 30 30 H 1.09002 * 109.50087 * 185.48915 * 11 10 9 31 31 H 1.08996 * 109.33392 * 301.13069 * 12 11 10 32 32 H 0.96997 * 120.00118 * 264.79365 * 13 12 11 33 33 H 1.09010 * 115.54525 * 154.58620 * 21 20 19 34 34 H 1.09006 * 117.50100 * 359.97438 * 22 21 20 35 35 H 1.09000 * 117.50233 * 145.02383 * 22 21 20 36 36 H 1.08999 * 117.49463 * 214.98267 * 23 21 20 37 37 H 1.08993 * 117.50035 * 359.97438 * 23 21 20 38 38 H 1.09002 * 109.49848 * 178.74812 * 24 12 11 39 39 H 1.08999 * 109.49849 * 58.64620 * 24 12 11 40 40 H 1.09004 * 109.59094 * 246.19900 * 25 9 7 41 41 H 1.09001 * 109.59077 * 6.49172 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4367 2.0817 -1.3982 5 1 1.4795 2.6343 0.7603 6 1 3.5770 1.4234 0.6382 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1076 0.3289 9 7 3.3137 -1.2400 -0.4188 10 6 3.8174 -0.2583 -1.3889 11 6 4.4647 -1.0049 -2.5595 12 6 5.5293 -1.9642 -2.0210 13 7 6.1713 -2.6584 -3.1399 14 6 7.2003 -2.0802 -3.7905 15 8 7.5962 -0.9823 -3.4484 16 6 7.8456 -2.7780 -4.9142 17 16 7.4565 -4.3685 -5.5952 18 7 8.5700 -4.3303 -6.6962 19 7 9.2190 -3.2379 -6.6139 20 6 8.8998 -2.3514 -5.7002 21 6 9.6005 -1.0285 -5.5268 22 6 10.6082 -0.6165 -6.6018 23 6 11.0993 -1.0576 -5.2207 24 6 4.8755 -2.9898 -1.0921 25 6 4.2351 -2.2628 0.0946 26 1 -0.4850 0.8401 0.0004 27 1 2.9908 0.3501 -1.7559 28 1 4.5579 0.3822 -0.9097 29 1 3.7035 -1.5726 -3.0945 30 1 4.9277 -0.2876 -3.2372 31 1 6.2781 -1.3980 -1.4672 32 1 5.8557 -3.5342 -3.4126 33 1 9.0075 -0.2395 -5.0640 34 1 10.7648 -1.3025 -7.4343 35 1 10.6786 0.4435 -6.8460 36 1 11.4923 -0.2876 -4.5568 37 1 11.5784 -2.0336 -5.1442 38 1 5.6320 -3.6849 -0.7278 39 1 4.1091 -3.5392 -1.6388 40 1 5.0116 -1.7874 0.6940 41 1 3.6846 -2.9757 0.7085 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589400112.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:12 Heat of formation + Delta-G solvation = 66.478073 kcal Electronic energy + Delta-G solvation = -24700.979386 eV Core-core repulsion = 21130.272937 eV Total energy + Delta-G solvation = -3570.706449 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23180 -40.98022 -39.15929 -37.97606 -36.16588 -34.17586 -33.12336 -31.96841 -31.75192 -28.76029 -26.87227 -25.06017 -24.43607 -23.78911 -23.29242 -22.78969 -21.65397 -21.04198 -19.20195 -19.00938 -18.39964 -17.55972 -17.21521 -17.01202 -16.58048 -15.97808 -15.90012 -15.67264 -15.37259 -15.34296 -14.84917 -14.53677 -14.22963 -14.11735 -13.89629 -13.44814 -13.34715 -12.95282 -12.71619 -12.56071 -12.45269 -12.25762 -12.22071 -12.04633 -11.76826 -11.56684 -11.49696 -11.46169 -11.40155 -11.07320 -10.97103 -10.74335 -10.50930 -10.16121 -8.95697 -8.16284 -5.47512 -1.42845 -0.32436 0.33706 0.71739 1.30204 1.41531 1.49364 1.77464 1.82849 2.41575 2.63254 2.94970 3.05675 3.28186 3.34690 3.56684 3.80816 3.88284 3.93094 3.96460 4.06327 4.22447 4.31881 4.46821 4.53657 4.66225 4.68742 4.74123 4.84250 4.95180 4.95663 5.00871 5.09992 5.13032 5.17722 5.23831 5.33491 5.45124 5.88134 6.14186 6.27896 6.51269 6.92004 6.94256 7.62810 8.03279 9.03360 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.003104 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.018676 B = 9019.660230 C = 9773.328922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.033 4.033 3 Si 0.938 3.062 4 H -0.280 1.280 5 H -0.312 1.312 6 H -0.262 1.262 7 C -0.243 4.243 8 H 0.061 0.939 9 N -0.620 5.620 10 C 0.125 3.875 11 C -0.133 4.133 12 C 0.161 3.839 13 N -0.701 5.701 14 C 0.604 3.396 15 O -0.543 6.543 16 C -0.308 4.308 17 S 0.508 5.492 18 N -0.280 5.280 19 N -0.267 5.267 20 C 0.127 3.873 21 C -0.110 4.110 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.128 4.128 25 C 0.143 3.857 26 H 0.261 0.739 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.412 0.588 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.976 -8.988 -11.853 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.228 4.228 3 Si 0.768 3.232 4 H -0.207 1.207 5 H -0.241 1.241 6 H -0.186 1.186 7 C -0.373 4.373 8 H 0.079 0.921 9 N -0.344 5.344 10 C -0.001 4.001 11 C -0.173 4.173 12 C 0.057 3.943 13 N -0.353 5.353 14 C 0.388 3.612 15 O -0.420 6.420 16 C -0.448 4.448 17 S 0.645 5.355 18 N -0.261 5.261 19 N -0.132 5.132 20 C -0.021 4.021 21 C -0.132 4.132 22 C -0.187 4.187 23 C -0.184 4.184 24 C -0.167 4.167 25 C 0.018 3.982 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.249 0.751 33 H 0.150 0.850 34 H 0.120 0.880 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.040 -9.862 -12.640 26.452 hybrid contribution -0.301 1.961 0.580 2.067 sum 20.739 -7.901 -12.060 25.259 Atomic orbital electron populations 1.69952 1.07267 1.27078 1.55901 1.25843 0.95735 1.00615 1.00577 0.86049 0.78874 0.80994 0.77305 1.20703 1.24075 1.18647 1.18906 0.86657 0.93608 1.38126 0.92137 1.44542 1.07963 1.34605 1.47313 1.21280 0.96506 0.92114 0.90182 1.22263 0.98112 0.99003 0.97918 1.20838 0.93605 0.93633 0.86191 1.45897 1.32950 1.22400 1.34016 1.16564 0.79646 0.84539 0.80465 1.90808 1.64576 1.20525 1.66141 1.27648 1.06272 1.03859 1.07032 1.82188 1.28504 1.08624 1.16232 1.78638 1.09382 1.16965 1.21103 1.70565 1.23831 0.97657 1.21145 1.22118 0.93339 0.96951 0.89686 1.20668 0.92830 0.91461 1.08253 1.23134 0.99668 1.03370 0.92534 1.23083 0.91852 1.03876 0.99629 1.22195 1.00453 0.97336 0.96722 1.21105 0.92004 0.90659 0.94398 0.93033 0.93282 0.95319 0.91528 0.91950 0.90166 0.75121 0.84997 0.87989 0.86243 0.86356 0.88713 0.88109 0.90712 0.94618 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.23 13.97 21.65 0.30 -58.93 16 2 C -0.03 -1.89 5.23 84.86 0.44 -1.44 16 3 Si 0.94 46.45 24.34 68.60 1.67 48.11 16 4 H -0.28 -13.32 6.62 99.48 0.66 -12.66 16 5 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 6 H -0.26 -12.45 6.64 99.48 0.66 -11.79 16 7 C -0.24 -13.24 10.03 84.03 0.84 -12.39 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 9 N -0.62 -27.41 2.77 -699.09 -1.94 -29.35 16 10 C 0.12 5.18 4.20 86.36 0.36 5.54 16 11 C -0.13 -4.34 5.66 30.68 0.17 -4.17 16 12 C 0.16 4.26 2.41 45.03 0.11 4.36 16 13 N -0.70 -14.43 5.07 -445.87 -2.26 -16.69 16 14 C 0.60 14.42 7.77 86.59 0.67 15.09 16 15 O -0.54 -16.55 14.63 -4.08 -0.06 -16.60 16 16 C -0.31 -6.28 6.81 24.62 0.17 -6.11 16 17 S 0.51 7.27 23.05 -56.49 -1.30 5.97 16 18 N -0.28 -5.72 12.51 37.02 0.46 -5.26 16 19 N -0.27 -6.05 10.95 -48.18 -0.53 -6.57 16 20 C 0.13 2.79 6.59 42.65 0.28 3.08 16 21 C -0.11 -2.25 5.63 -11.54 -0.06 -2.32 16 22 C -0.15 -2.36 10.11 30.62 0.31 -2.05 16 23 C -0.15 -2.35 10.24 30.62 0.31 -2.04 16 24 C -0.13 -3.12 5.55 30.67 0.17 -2.95 16 25 C 0.14 4.82 6.52 86.37 0.56 5.39 16 26 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 27 H 0.05 2.29 4.49 -2.39 -0.01 2.28 16 28 H 0.03 1.19 7.07 -2.38 -0.02 1.18 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 2.34 7.58 -2.39 -0.02 2.32 16 32 H 0.41 5.84 8.03 -92.71 -0.74 5.10 16 33 H 0.13 3.07 6.64 -2.38 -0.02 3.05 16 34 H 0.10 1.70 7.80 -2.38 -0.02 1.68 16 35 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 Total: -1.00 -70.26 345.44 0.92 -69.34 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.23 Total: 10.00 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 4.34 Total: -0.01 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -3.96 Total: -116.80 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.06 Total: -16.60 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.67 Total: 48.11 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -1.30 Total: 5.97 kcal Total: -70.26 0.92 -69.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589400112.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.813 kcal (2) G-P(sol) polarization free energy of solvation -70.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds