Wall clock time and date at job start Sat Apr 11 2020 00:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99855 * 2 1 4 4 H 1.48492 * 109.47686 * 269.99847 * 3 2 1 5 5 H 1.48502 * 109.47122 * 30.00458 * 3 2 1 6 6 H 1.48508 * 109.46845 * 149.99681 * 3 2 1 7 7 C 1.37875 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00204 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.49253 * 60.06725 * 9 7 2 11 11 C 1.53037 * 109.49803 * 180.16061 * 9 7 2 12 12 C 1.53033 * 109.53898 * 181.31652 * 11 9 7 13 13 C 1.53194 * 109.31280 * 298.64059 * 12 11 9 14 14 N 1.46922 * 108.78067 * 54.63310 * 13 12 11 15 15 C 1.34769 * 120.63318 * 126.36779 * 14 13 12 16 16 O 1.21895 * 119.99965 * 180.02562 * 15 14 13 17 17 N 1.33574 * 120.00150 * 0.02562 * 15 14 13 18 18 C 1.33189 * 120.00183 * 174.67914 * 17 15 14 19 19 N 1.33670 * 125.23564 * 5.36666 * 18 17 15 20 20 H 0.97004 * 122.81332 * 0.02562 * 19 18 17 21 21 N 1.37944 * 114.37522 * 179.83463 * 19 18 17 22 22 C 1.27976 * 115.11376 * 0.45952 * 21 19 18 23 23 C 1.50699 * 125.04906 * 179.77385 * 22 21 19 24 24 C 1.52996 * 117.50129 * 8.72009 * 23 22 21 25 25 C 1.53000 * 117.50040 * 300.05946 * 23 22 21 26 26 S 1.70857 * 125.23803 * 185.66920 * 18 17 15 27 27 C 1.46930 * 118.73405 * 306.39451 * 14 13 12 28 28 H 0.97003 * 120.00403 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.45506 * 61.29711 * 11 9 7 30 30 H 1.08999 * 109.46284 * 301.34279 * 11 9 7 31 31 H 1.09004 * 109.50156 * 178.68551 * 12 11 9 32 32 H 1.08999 * 109.49786 * 58.58836 * 12 11 9 33 33 H 1.09008 * 109.58760 * 174.42208 * 13 12 11 34 34 H 1.09006 * 109.58744 * 294.69942 * 13 12 11 35 35 H 1.09001 * 115.54975 * 154.39048 * 23 22 21 36 36 H 1.08994 * 117.50133 * 0.02562 * 24 23 22 37 37 H 1.09003 * 117.50161 * 145.01647 * 24 23 22 38 38 H 1.08998 * 117.49637 * 214.98007 * 25 23 22 39 39 H 1.08994 * 117.49771 * 0.02562 * 25 23 22 40 40 H 1.09009 * 109.58388 * 173.39358 * 27 14 13 41 41 H 1.08998 * 109.58579 * 293.81270 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.3999 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8749 -0.6811 0.8916 11 6 4.0224 -2.6366 -0.0024 12 6 5.5524 -2.6379 0.0313 13 6 6.0873 -1.9324 -1.2189 14 7 5.4867 -0.5940 -1.3002 15 6 6.2632 0.5011 -1.4186 16 8 5.7527 1.6060 -1.4846 17 7 7.5923 0.3757 -1.4635 18 6 8.3549 1.4447 -1.6866 19 7 7.9119 2.7025 -1.7783 20 1 6.9754 2.9380 -1.6862 21 7 8.8986 3.6381 -2.0106 22 6 10.0831 3.1644 -2.1125 23 6 11.3228 3.9817 -2.3696 24 6 11.1883 5.5049 -2.3176 25 6 11.3752 4.7982 -3.6625 26 16 10.0490 1.4184 -1.9071 27 6 4.0233 -0.4722 -1.2494 28 1 -0.4851 0.8400 -0.0004 29 1 3.6786 -3.1413 -0.9054 30 1 3.6394 -3.1596 0.8738 31 1 5.9150 -3.6656 0.0524 32 1 5.8971 -2.1117 0.9215 33 1 7.1716 -1.8429 -1.1522 34 1 5.8221 -2.5087 -2.1053 35 1 12.2556 3.5464 -2.0112 36 1 10.2032 5.9159 -2.0970 37 1 12.0326 6.0716 -1.9252 38 1 12.3425 4.9003 -4.1543 39 1 10.5128 4.7445 -4.3268 40 1 3.7457 0.5809 -1.2028 41 1 3.5877 -0.9280 -2.1385 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596447630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:36 Heat of formation + Delta-G solvation = 87.186618 kcal Electronic energy + Delta-G solvation = -24803.710289 eV Core-core repulsion = 21233.901830 eV Total energy + Delta-G solvation = -3569.808460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09531 -39.66636 -37.96017 -37.04738 -34.28510 -33.37365 -31.98916 -30.94150 -30.37175 -26.59414 -25.13629 -25.06714 -24.03072 -22.92546 -21.95383 -20.96169 -20.12483 -19.21620 -18.73988 -17.47309 -16.71692 -16.37304 -16.31401 -16.02982 -15.93650 -14.94346 -14.68708 -14.30885 -13.89520 -13.76820 -13.12994 -13.01854 -12.88643 -12.83653 -12.55058 -12.26311 -12.12791 -11.98937 -11.59609 -11.28679 -11.06134 -11.03680 -10.93692 -10.57206 -10.51445 -10.34765 -10.04722 -10.00264 -9.73922 -9.40799 -9.10059 -9.05571 -8.62413 -8.50393 -7.85125 -6.09769 -4.10641 0.24340 0.58627 0.95300 1.26028 2.19274 3.26011 3.36714 3.38705 3.47931 3.57608 3.79169 3.91228 4.19134 4.27659 4.40087 4.43056 4.84797 5.02179 5.13845 5.23035 5.25910 5.44310 5.49112 5.51553 5.62778 5.66166 5.98560 6.12853 6.16887 6.24435 6.41281 6.49803 6.56800 6.71672 6.81114 6.99383 7.05652 7.18892 7.26058 7.47461 7.73701 7.99346 8.49017 8.83732 8.94010 9.52222 11.02235 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.003414 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.617136 B = 8198.973315 C = 9374.651276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.004 3.996 10 H 0.029 0.971 11 C -0.101 4.101 12 C -0.136 4.136 13 C 0.118 3.882 14 N -0.582 5.582 15 C 0.671 3.329 16 O -0.630 6.630 17 N -0.603 5.603 18 C 0.354 3.646 19 N -0.497 5.497 20 H 0.461 0.539 21 N -0.226 5.226 22 C 0.070 3.930 23 C -0.091 4.091 24 C -0.151 4.151 25 C -0.152 4.152 26 S 0.195 5.805 27 C 0.111 3.889 28 H 0.265 0.735 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.140 0.860 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.365 5.617 -6.303 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.552 4.552 8 H 0.097 0.903 9 C -0.015 4.015 10 H 0.048 0.952 11 C -0.139 4.139 12 C -0.174 4.174 13 C -0.005 4.005 14 N -0.313 5.313 15 C 0.370 3.630 16 O -0.513 6.513 17 N -0.362 5.362 18 C -0.027 4.027 19 N -0.243 5.243 20 H 0.324 0.676 21 N -0.042 5.042 22 C -0.230 4.230 23 C -0.113 4.113 24 C -0.191 4.191 25 C -0.191 4.191 26 S 0.431 5.569 27 C -0.011 4.011 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.158 0.842 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 28.094 5.346 -6.206 29.264 hybrid contribution -1.305 1.789 0.101 2.217 sum 26.789 7.135 -6.105 28.387 Atomic orbital electron populations 1.69888 1.06213 1.27090 1.50173 1.25036 0.94750 0.99038 0.94147 0.86964 0.79576 0.83516 0.78837 1.20067 1.22377 1.19015 1.20970 0.88170 0.94639 1.51416 0.90337 1.19503 0.96769 0.92410 0.92849 0.95243 1.21447 0.92328 0.98591 1.01485 1.21996 0.98203 0.99505 0.97741 1.21642 0.98600 0.82281 0.97974 1.47410 1.07430 1.05047 1.71372 1.17032 0.83989 0.84141 0.77873 1.90494 1.76774 1.25484 1.58505 1.69399 1.06637 1.23655 1.36497 1.24761 1.01481 0.85369 0.91106 1.48207 1.12399 1.01050 1.62674 0.67611 1.74012 0.97408 1.17992 1.14779 1.27235 0.95957 0.96380 1.03431 1.20456 0.92185 0.92853 1.05842 1.23133 1.04795 0.91164 0.99966 1.23158 1.04425 1.01183 0.90372 1.84776 0.94438 1.01861 1.75832 1.22635 0.74791 1.02476 1.01171 0.92535 0.92493 0.92247 0.91610 0.92194 0.89093 0.92060 0.84200 0.87385 0.87328 0.87154 0.88017 0.90377 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 2 C 0.07 2.18 5.45 -17.82 -0.10 2.08 16 3 Si 0.88 24.15 24.32 -169.99 -4.13 20.02 16 4 H -0.27 -7.58 6.92 56.52 0.39 -7.19 16 5 H -0.30 -8.02 7.11 56.52 0.40 -7.61 16 6 H -0.27 -7.38 6.53 56.52 0.37 -7.01 16 7 C -0.51 -14.73 9.15 -34.44 -0.31 -15.04 16 8 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 9 C 0.00 0.11 1.84 -91.65 -0.17 -0.06 16 10 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 11 C -0.10 -2.03 5.11 -26.69 -0.14 -2.16 16 12 C -0.14 -2.27 6.08 -26.61 -0.16 -2.43 16 13 C 0.12 2.00 6.43 -3.71 -0.02 1.98 16 14 N -0.58 -12.38 2.97 -178.79 -0.53 -12.91 16 15 C 0.67 14.51 8.21 -87.99 -0.72 13.79 16 16 O -0.63 -15.07 12.96 5.01 0.06 -15.00 16 17 N -0.60 -10.84 9.05 -18.27 -0.17 -11.00 16 18 C 0.35 5.38 7.94 -89.31 -0.71 4.67 16 19 N -0.50 -7.73 6.57 29.39 0.19 -7.54 16 20 H 0.46 8.33 5.82 -184.19 -1.07 7.26 16 21 N -0.23 -2.78 11.55 33.21 0.38 -2.40 16 22 C 0.07 0.64 7.19 -13.89 -0.10 0.54 16 23 C -0.09 -0.49 6.31 -91.77 -0.58 -1.07 16 24 C -0.15 -0.75 10.12 -26.70 -0.27 -1.02 16 25 C -0.15 -0.68 10.24 -26.69 -0.27 -0.96 16 26 S 0.19 1.88 23.13 -107.50 -2.49 -0.61 16 27 C 0.11 2.67 5.11 -3.71 -0.02 2.65 16 28 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.42 6.85 -51.92 -0.36 1.06 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.72 7.85 -51.93 -0.41 0.31 16 37 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 2.09 2.32 -51.92 -0.12 1.97 16 41 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -35.39 341.98 -10.48 -45.87 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.15 Total: 2.74 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -3.58 Total: 2.97 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.65 Total: -61.14 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.06 Total: -15.00 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -4.13 Total: 20.02 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.39 -10.48 -45.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596447630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.052 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds