Wall clock time and date at job start Sat Apr 11 2020 00:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99855 * 2 1 4 4 H 1.48492 * 109.47686 * 269.99847 * 3 2 1 5 5 H 1.48502 * 109.47122 * 30.00458 * 3 2 1 6 6 H 1.48508 * 109.46845 * 149.99681 * 3 2 1 7 7 C 1.37875 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00204 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.49253 * 60.06725 * 9 7 2 11 11 C 1.53037 * 109.49803 * 180.16061 * 9 7 2 12 12 C 1.53033 * 109.53898 * 181.31652 * 11 9 7 13 13 C 1.53194 * 109.31280 * 298.64059 * 12 11 9 14 14 N 1.46922 * 108.78067 * 54.63310 * 13 12 11 15 15 C 1.34769 * 120.63318 * 126.36779 * 14 13 12 16 16 O 1.21895 * 119.99965 * 180.02562 * 15 14 13 17 17 N 1.33574 * 120.00150 * 0.02562 * 15 14 13 18 18 C 1.33189 * 120.00183 * 174.67914 * 17 15 14 19 19 N 1.33670 * 125.23564 * 5.36666 * 18 17 15 20 20 H 0.97004 * 122.81332 * 0.02562 * 19 18 17 21 21 N 1.37944 * 114.37522 * 179.83463 * 19 18 17 22 22 C 1.27976 * 115.11376 * 0.45952 * 21 19 18 23 23 C 1.50699 * 125.04906 * 179.77385 * 22 21 19 24 24 C 1.52996 * 117.50129 * 8.72009 * 23 22 21 25 25 C 1.53000 * 117.50040 * 300.05946 * 23 22 21 26 26 S 1.70857 * 125.23803 * 185.66920 * 18 17 15 27 27 C 1.46930 * 118.73405 * 306.39451 * 14 13 12 28 28 H 0.97003 * 120.00403 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.45506 * 61.29711 * 11 9 7 30 30 H 1.08999 * 109.46284 * 301.34279 * 11 9 7 31 31 H 1.09004 * 109.50156 * 178.68551 * 12 11 9 32 32 H 1.08999 * 109.49786 * 58.58836 * 12 11 9 33 33 H 1.09008 * 109.58760 * 174.42208 * 13 12 11 34 34 H 1.09006 * 109.58744 * 294.69942 * 13 12 11 35 35 H 1.09001 * 115.54975 * 154.39048 * 23 22 21 36 36 H 1.08994 * 117.50133 * 0.02562 * 24 23 22 37 37 H 1.09003 * 117.50161 * 145.01647 * 24 23 22 38 38 H 1.08998 * 117.49637 * 214.98007 * 25 23 22 39 39 H 1.08994 * 117.49771 * 0.02562 * 25 23 22 40 40 H 1.09009 * 109.58388 * 173.39358 * 27 14 13 41 41 H 1.08998 * 109.58579 * 293.81270 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.3999 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8749 -0.6811 0.8916 11 6 4.0224 -2.6366 -0.0024 12 6 5.5524 -2.6379 0.0313 13 6 6.0873 -1.9324 -1.2189 14 7 5.4867 -0.5940 -1.3002 15 6 6.2632 0.5011 -1.4186 16 8 5.7527 1.6060 -1.4846 17 7 7.5923 0.3757 -1.4635 18 6 8.3549 1.4447 -1.6866 19 7 7.9119 2.7025 -1.7783 20 1 6.9754 2.9380 -1.6862 21 7 8.8986 3.6381 -2.0106 22 6 10.0831 3.1644 -2.1125 23 6 11.3228 3.9817 -2.3696 24 6 11.1883 5.5049 -2.3176 25 6 11.3752 4.7982 -3.6625 26 16 10.0490 1.4184 -1.9071 27 6 4.0233 -0.4722 -1.2494 28 1 -0.4851 0.8400 -0.0004 29 1 3.6786 -3.1413 -0.9054 30 1 3.6394 -3.1596 0.8738 31 1 5.9150 -3.6656 0.0524 32 1 5.8971 -2.1117 0.9215 33 1 7.1716 -1.8429 -1.1522 34 1 5.8221 -2.5087 -2.1053 35 1 12.2556 3.5464 -2.0112 36 1 10.2032 5.9159 -2.0970 37 1 12.0326 6.0716 -1.9252 38 1 12.3425 4.9003 -4.1543 39 1 10.5128 4.7445 -4.3268 40 1 3.7457 0.5809 -1.2028 41 1 3.5877 -0.9280 -2.1385 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596447630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:35 Heat of formation + Delta-G solvation = 62.056377 kcal Electronic energy + Delta-G solvation = -24804.800018 eV Core-core repulsion = 21233.901830 eV Total energy + Delta-G solvation = -3570.898189 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.26518 -41.00610 -39.04611 -38.11001 -35.54366 -35.32008 -33.75504 -32.32483 -31.88565 -27.85651 -26.99518 -26.15595 -25.28272 -23.60629 -23.27828 -22.29579 -21.11637 -20.62176 -19.89779 -19.05382 -18.69492 -17.90528 -17.31016 -17.07896 -16.84709 -16.44364 -16.12714 -15.62466 -15.43143 -15.23571 -15.03210 -14.65470 -14.22813 -13.99796 -13.83236 -13.33956 -13.26519 -13.15412 -12.99204 -12.72303 -12.40437 -12.38648 -12.19416 -11.91270 -11.82637 -11.74542 -11.65265 -11.30943 -11.21967 -11.12406 -10.87263 -10.77884 -10.60084 -9.91495 -9.22963 -8.45575 -6.46505 -0.69721 -0.48295 0.02064 0.28825 1.14275 1.16978 1.19876 1.33935 1.88906 2.14043 2.30969 2.83792 2.91156 3.13593 3.58395 3.70510 3.85669 3.99639 4.04264 4.11082 4.12825 4.35480 4.37612 4.48420 4.55117 4.69140 4.83321 4.91881 4.92614 4.96230 5.03847 5.13292 5.14342 5.19875 5.27767 5.39047 5.47284 5.57458 5.66610 5.91701 6.06805 6.20984 6.48087 6.61908 7.18689 7.33683 8.70484 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.003414 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.617136 B = 8198.973315 C = 9374.651276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.032 3.968 3 Si 0.939 3.061 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.005 3.995 10 H 0.009 0.991 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.116 3.884 14 N -0.592 5.592 15 C 0.661 3.339 16 O -0.670 6.670 17 N -0.619 5.619 18 C 0.326 3.674 19 N -0.511 5.511 20 H 0.449 0.551 21 N -0.257 5.257 22 C 0.082 3.918 23 C -0.100 4.100 24 C -0.154 4.154 25 C -0.142 4.142 26 S 0.293 5.707 27 C 0.119 3.881 28 H 0.268 0.732 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.179 0.821 36 H 0.084 0.916 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.336 5.317 -6.962 34.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.167 4.167 3 Si 0.769 3.231 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.074 0.926 9 C -0.015 4.015 10 H 0.027 0.973 11 C -0.135 4.135 12 C -0.163 4.163 13 C -0.005 4.005 14 N -0.323 5.323 15 C 0.360 3.640 16 O -0.556 6.556 17 N -0.382 5.382 18 C -0.053 4.053 19 N -0.251 5.251 20 H 0.307 0.693 21 N -0.073 5.073 22 C -0.216 4.216 23 C -0.122 4.122 24 C -0.193 4.193 25 C -0.181 4.181 26 S 0.530 5.470 27 C -0.004 4.004 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.196 0.804 36 H 0.103 0.897 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 33.164 5.060 -6.873 34.245 hybrid contribution -2.575 1.985 0.234 3.260 sum 30.589 7.045 -6.638 32.084 Atomic orbital electron populations 1.69967 1.07258 1.27859 1.52292 1.25564 0.95185 1.01375 0.94608 0.86059 0.77875 0.81152 0.77990 1.21055 1.21763 1.20293 1.21294 0.90536 0.93418 1.49466 0.92553 1.19435 0.94130 0.95656 0.92302 0.97292 1.21389 0.95152 0.95080 1.01862 1.21940 0.95102 1.01984 0.97260 1.21917 0.99471 0.80350 0.98792 1.47360 1.06045 1.06811 1.72104 1.17486 0.85476 0.83506 0.77538 1.90472 1.77748 1.26934 1.60427 1.69437 1.04476 1.24399 1.39856 1.25789 1.04210 0.85033 0.90228 1.48338 1.12797 1.01920 1.62030 0.69309 1.74196 0.98020 1.17084 1.17997 1.28221 0.96283 0.97354 0.99737 1.20950 0.91382 0.92836 1.07040 1.23211 1.04669 0.90824 1.00594 1.23268 1.05340 0.99733 0.89778 1.84494 0.88808 1.00743 1.72933 1.22141 0.77481 1.00293 1.00482 0.92249 0.91870 0.92150 0.87202 0.93072 0.87221 0.90322 0.80425 0.89743 0.84716 0.84109 0.89697 0.93347 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.18 13.96 21.45 0.30 -59.88 16 2 C 0.03 1.95 5.45 84.65 0.46 2.41 16 3 Si 0.94 52.70 24.32 68.60 1.67 54.37 16 4 H -0.28 -16.17 6.92 99.48 0.69 -15.48 16 5 H -0.29 -15.75 7.11 99.48 0.71 -15.04 16 6 H -0.28 -15.94 6.53 99.48 0.65 -15.29 16 7 C -0.51 -30.03 9.15 25.60 0.23 -29.79 16 8 H 0.06 3.52 7.99 -2.91 -0.02 3.50 16 9 C 0.00 0.23 1.84 -11.46 -0.02 0.21 16 10 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 11 C -0.10 -3.82 5.11 30.62 0.16 -3.66 16 12 C -0.12 -3.86 6.08 30.67 0.19 -3.67 16 13 C 0.12 3.71 6.43 86.36 0.56 4.26 16 14 N -0.59 -25.28 2.97 -837.71 -2.49 -27.77 16 15 C 0.66 29.11 8.21 179.43 1.47 30.58 16 16 O -0.67 -33.47 12.96 -4.98 -0.06 -33.53 16 17 N -0.62 -21.94 9.05 -330.53 -2.99 -24.93 16 18 C 0.33 9.62 7.94 179.89 1.43 11.05 16 19 N -0.51 -16.08 6.57 -60.92 -0.40 -16.48 16 20 H 0.45 17.06 5.82 -214.69 -1.25 15.81 16 21 N -0.26 -6.15 11.55 -48.74 -0.56 -6.72 16 22 C 0.08 1.29 7.19 88.67 0.64 1.93 16 23 C -0.10 -0.67 6.31 -11.54 -0.07 -0.74 16 24 C -0.15 -1.06 10.12 30.62 0.31 -0.75 16 25 C -0.14 -0.76 10.24 30.62 0.31 -0.45 16 26 S 0.29 4.69 23.13 -56.49 -1.31 3.38 16 27 C 0.12 5.89 5.11 86.36 0.44 6.33 16 28 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 29 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.11 3.13 6.85 -2.38 -0.02 3.11 16 34 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.18 -0.08 8.14 -2.39 -0.02 -0.10 16 36 H 0.08 1.03 7.85 -2.39 -0.02 1.01 16 37 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 2.69 2.32 -2.38 -0.01 2.68 16 41 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -82.51 341.98 0.01 -82.50 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -0.25 Total: 11.36 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.10 Total: 17.70 kcal Atomic # 7 Polarization: -129.63 SS G_CDS: -6.14 Total: -135.77 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -0.06 Total: -33.53 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 1.67 Total: 54.37 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.31 Total: 3.38 kcal Total: -82.51 0.01 -82.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596447630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.556 kcal (2) G-P(sol) polarization free energy of solvation -82.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds