Wall clock time and date at job start Sat Apr 11 2020 00:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00348 * 2 1 4 4 H 1.48500 * 109.46903 * 270.00478 * 3 2 1 5 5 H 1.48494 * 109.46922 * 30.00465 * 3 2 1 6 6 H 1.48495 * 109.46976 * 150.00720 * 3 2 1 7 7 C 1.37880 * 119.99405 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00132 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49996 * 299.93818 * 9 7 2 11 11 C 1.53042 * 109.52442 * 179.85561 * 9 7 2 12 12 C 1.53039 * 109.54031 * 178.67006 * 11 9 7 13 13 C 1.52760 * 109.38459 * 61.24177 * 12 11 9 14 14 N 1.46931 * 109.00543 * 305.58756 * 13 12 11 15 15 C 1.34777 * 120.63086 * 233.58109 * 14 13 12 16 16 O 1.21283 * 119.99750 * 179.72075 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.02562 * 15 14 13 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 14 19 19 O 1.21277 * 120.00023 * 359.97438 * 18 17 15 20 20 N 1.34774 * 119.99464 * 179.97438 * 18 17 15 21 21 C 1.46505 * 119.99516 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47064 * 180.02562 * 21 20 18 23 23 F 1.39898 * 109.47458 * 59.99142 * 22 21 20 24 24 F 1.39895 * 109.47410 * 179.97438 * 22 21 20 25 25 F 1.39912 * 109.46817 * 299.99823 * 22 21 20 26 26 C 1.46925 * 118.73924 * 53.31068 * 14 13 12 27 27 H 0.97006 * 119.99602 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46134 * 298.69308 * 11 9 7 29 29 H 1.09001 * 109.46045 * 58.65824 * 11 9 7 30 30 H 1.09004 * 109.49958 * 181.31755 * 12 11 9 31 31 H 1.08994 * 109.49543 * 301.41261 * 12 11 9 32 32 H 1.08997 * 109.51122 * 185.71191 * 13 12 11 33 33 H 1.09000 * 109.43557 * 65.42042 * 13 12 11 34 34 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 35 35 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 36 36 H 0.96995 * 120.00583 * 359.97438 * 20 18 17 37 37 H 1.08998 * 109.46922 * 299.99460 * 21 20 18 38 38 H 1.08994 * 109.47525 * 60.00140 * 21 20 18 39 39 H 1.09005 * 109.58470 * 66.42378 * 26 14 13 40 40 H 1.08995 * 109.58817 * 186.71135 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 1 0.6252 -2.5580 0.8901 11 6 2.2442 -3.6634 -0.0048 12 6 1.4796 -4.9887 0.0287 13 6 0.6004 -5.0984 -1.2157 14 7 -0.2573 -3.9085 -1.3019 15 6 -1.5942 -4.0327 -1.4201 16 8 -2.2917 -3.0427 -1.4852 17 6 -2.2227 -5.4017 -1.4643 18 6 -3.7180 -5.2640 -1.5919 19 8 -4.2234 -4.1627 -1.6416 20 7 -4.4934 -6.3648 -1.6508 21 6 -5.9471 -6.2309 -1.7744 22 6 -6.5852 -7.6207 -1.8194 23 9 -6.2788 -8.3129 -0.6429 24 9 -7.9734 -7.4930 -1.9367 25 9 -6.0868 -8.3273 -2.9193 26 6 0.3694 -2.5806 -1.2509 27 1 -0.4850 0.8401 0.0004 28 1 2.8530 -3.6180 -0.9079 29 1 2.8888 -3.5940 0.8714 30 1 2.1879 -5.8170 0.0492 31 1 0.8519 -5.0241 0.9190 32 1 -0.0202 -5.9917 -1.1454 33 1 1.2320 -5.1584 -2.1020 34 1 -1.8341 -5.9525 -2.3209 35 1 -1.9844 -5.9407 -0.5474 36 1 -4.0891 -7.2456 -1.6115 37 1 -6.3354 -5.6808 -0.9172 38 1 -6.1857 -5.6913 -2.6908 39 1 0.9820 -2.4313 -2.1401 40 1 -0.4033 -1.8133 -1.2064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:45 Heat of formation + Delta-G solvation = -227.477638 kcal Electronic energy + Delta-G solvation = -27560.664947 eV Core-core repulsion = 22960.309259 eV Total energy + Delta-G solvation = -4600.355688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.58111 -48.09105 -48.05959 -40.22726 -38.84539 -36.60264 -35.11719 -33.43043 -31.88144 -31.15715 -29.83674 -28.74968 -25.07074 -24.57085 -23.60237 -21.85012 -21.26261 -19.86852 -19.05078 -18.82549 -18.59439 -17.95292 -17.22829 -16.36479 -15.97388 -15.85578 -15.54321 -15.06223 -14.96592 -14.71304 -14.53150 -14.48559 -14.41729 -14.20674 -14.19613 -13.71501 -13.55715 -13.40523 -13.09018 -12.64880 -12.52992 -12.32080 -12.28875 -11.90800 -11.64740 -11.01218 -10.91257 -10.51318 -10.44133 -10.23173 -9.98071 -9.87263 -9.55083 -9.14659 -9.08507 -8.78795 -8.41788 -7.70781 -5.97519 -4.06919 2.09216 2.54630 2.55996 3.25093 3.27835 3.32475 3.39606 3.41578 3.56815 3.68578 3.86899 4.44323 4.48907 4.76097 4.84617 4.99971 5.15686 5.21288 5.31845 5.33818 5.48394 5.63924 5.84409 5.95885 6.13743 6.29348 6.58660 6.66940 6.84414 6.97015 7.04762 7.17023 7.31128 7.65899 7.88719 8.01377 8.07109 8.26776 8.40636 8.92541 8.98803 9.58846 11.07488 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.002633 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.390773 B =10633.421249 C =11457.752367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.135 4.135 13 C 0.108 3.892 14 N -0.609 5.609 15 C 0.504 3.496 16 O -0.494 6.494 17 C -0.162 4.162 18 C 0.519 3.481 19 O -0.474 6.474 20 N -0.741 5.741 21 C 0.080 3.920 22 C 0.449 3.551 23 F -0.179 7.179 24 F -0.174 7.174 25 F -0.179 7.179 26 C 0.115 3.885 27 H 0.264 0.736 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.404 0.596 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.041 0.959 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 -20.079 -4.035 22.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.173 4.173 13 C -0.015 4.015 14 N -0.344 5.344 15 C 0.287 3.713 16 O -0.367 6.367 17 C -0.205 4.205 18 C 0.304 3.696 19 O -0.343 6.343 20 N -0.399 5.399 21 C -0.045 4.045 22 C 0.394 3.606 23 F -0.160 7.160 24 F -0.156 7.156 25 F -0.161 7.161 26 C -0.005 4.005 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.240 0.760 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.059 0.941 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.546 -18.545 -4.113 21.260 hybrid contribution 0.615 -0.050 0.034 0.618 sum -8.930 -18.595 -4.079 21.028 Atomic orbital electron populations 1.69890 1.05700 1.26884 1.49086 1.25063 0.94875 0.99256 0.94859 0.86597 0.79768 0.83557 0.78104 1.20654 1.21214 1.19972 1.21063 0.92864 0.90136 1.52066 0.92405 1.18965 0.92593 0.92263 0.94081 0.95363 1.21626 0.98575 0.94087 1.00569 1.21878 0.98654 0.99176 0.97590 1.21549 0.93628 0.87736 0.98622 1.48501 1.04976 1.08915 1.72009 1.19700 0.82740 0.89774 0.79047 1.90872 1.60262 1.38425 1.47124 1.21651 0.92521 1.00293 1.06082 1.20221 0.88815 0.83777 0.76814 1.90922 1.74314 1.24699 1.44401 1.45764 1.04802 1.10347 1.79017 1.22392 0.83172 0.91045 1.07941 1.20596 0.77271 0.88884 0.73830 1.93228 1.92718 1.81895 1.48163 1.93226 1.30529 1.96070 1.95736 1.93228 1.87185 1.81255 1.54391 1.22269 0.98614 0.81253 0.98395 0.92602 0.93182 0.93047 0.92215 0.92183 0.91368 0.92032 0.86391 0.86266 0.76047 0.86775 0.86808 0.94081 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.87 11.39 55.43 0.63 -25.23 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.10 8.57 -34.44 -0.30 -14.39 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.13 5.11 -26.69 -0.14 -2.26 16 12 C -0.13 -2.00 6.06 -26.83 -0.16 -2.16 16 13 C 0.11 1.50 6.32 -3.93 -0.02 1.48 16 14 N -0.61 -11.60 2.98 -173.03 -0.52 -12.11 16 15 C 0.50 9.68 7.69 -10.98 -0.08 9.59 16 16 O -0.49 -12.37 13.59 -18.96 -0.26 -12.63 16 17 C -0.16 -1.96 4.53 -29.03 -0.13 -2.09 16 18 C 0.52 7.00 7.82 -10.99 -0.09 6.91 16 19 O -0.47 -9.12 14.18 -18.96 -0.27 -9.39 16 20 N -0.74 -6.55 5.42 -60.29 -0.33 -6.88 16 21 C 0.08 0.64 5.64 -4.04 -0.02 0.62 16 22 C 0.45 3.29 3.11 37.16 0.12 3.41 16 23 F -0.18 -1.41 17.18 2.25 0.04 -1.37 16 24 F -0.17 -1.41 17.32 2.25 0.04 -1.37 16 25 F -0.18 -1.39 17.18 2.25 0.04 -1.35 16 26 C 0.11 2.74 5.40 -3.71 -0.02 2.72 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.67 5.93 -51.93 -0.31 0.36 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.12 0.99 7.95 -51.93 -0.41 0.58 16 35 H 0.12 1.08 7.68 -51.93 -0.40 0.68 16 36 H 0.40 2.39 8.36 -40.82 -0.34 2.04 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.12 3.49 5.12 -51.93 -0.27 3.22 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -35.39 342.27 -6.71 -42.09 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.07 Total: 0.52 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.15 Total: 6.24 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.21 Total: -44.23 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.53 Total: -22.02 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.12 Total: -4.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.39 -6.71 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.385 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds