Wall clock time and date at job start Sat Apr 11 2020 00:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00348 * 2 1 4 4 H 1.48500 * 109.46903 * 270.00478 * 3 2 1 5 5 H 1.48494 * 109.46922 * 30.00465 * 3 2 1 6 6 H 1.48495 * 109.46976 * 150.00720 * 3 2 1 7 7 C 1.37880 * 119.99405 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00132 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49996 * 299.93818 * 9 7 2 11 11 C 1.53042 * 109.52442 * 179.85561 * 9 7 2 12 12 C 1.53039 * 109.54031 * 178.67006 * 11 9 7 13 13 C 1.52760 * 109.38459 * 61.24177 * 12 11 9 14 14 N 1.46931 * 109.00543 * 305.58756 * 13 12 11 15 15 C 1.34777 * 120.63086 * 233.58109 * 14 13 12 16 16 O 1.21283 * 119.99750 * 179.72075 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.02562 * 15 14 13 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 14 19 19 O 1.21277 * 120.00023 * 359.97438 * 18 17 15 20 20 N 1.34774 * 119.99464 * 179.97438 * 18 17 15 21 21 C 1.46505 * 119.99516 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47064 * 180.02562 * 21 20 18 23 23 F 1.39898 * 109.47458 * 59.99142 * 22 21 20 24 24 F 1.39895 * 109.47410 * 179.97438 * 22 21 20 25 25 F 1.39912 * 109.46817 * 299.99823 * 22 21 20 26 26 C 1.46925 * 118.73924 * 53.31068 * 14 13 12 27 27 H 0.97006 * 119.99602 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46134 * 298.69308 * 11 9 7 29 29 H 1.09001 * 109.46045 * 58.65824 * 11 9 7 30 30 H 1.09004 * 109.49958 * 181.31755 * 12 11 9 31 31 H 1.08994 * 109.49543 * 301.41261 * 12 11 9 32 32 H 1.08997 * 109.51122 * 185.71191 * 13 12 11 33 33 H 1.09000 * 109.43557 * 65.42042 * 13 12 11 34 34 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 35 35 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 36 36 H 0.96995 * 120.00583 * 359.97438 * 20 18 17 37 37 H 1.08998 * 109.46922 * 299.99460 * 21 20 18 38 38 H 1.08994 * 109.47525 * 60.00140 * 21 20 18 39 39 H 1.09005 * 109.58470 * 66.42378 * 26 14 13 40 40 H 1.08995 * 109.58817 * 186.71135 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 1 0.6252 -2.5580 0.8901 11 6 2.2442 -3.6634 -0.0048 12 6 1.4796 -4.9887 0.0287 13 6 0.6004 -5.0984 -1.2157 14 7 -0.2573 -3.9085 -1.3019 15 6 -1.5942 -4.0327 -1.4201 16 8 -2.2917 -3.0427 -1.4852 17 6 -2.2227 -5.4017 -1.4643 18 6 -3.7180 -5.2640 -1.5919 19 8 -4.2234 -4.1627 -1.6416 20 7 -4.4934 -6.3648 -1.6508 21 6 -5.9471 -6.2309 -1.7744 22 6 -6.5852 -7.6207 -1.8194 23 9 -6.2788 -8.3129 -0.6429 24 9 -7.9734 -7.4930 -1.9367 25 9 -6.0868 -8.3273 -2.9193 26 6 0.3694 -2.5806 -1.2509 27 1 -0.4850 0.8401 0.0004 28 1 2.8530 -3.6180 -0.9079 29 1 2.8888 -3.5940 0.8714 30 1 2.1879 -5.8170 0.0492 31 1 0.8519 -5.0241 0.9190 32 1 -0.0202 -5.9917 -1.1454 33 1 1.2320 -5.1584 -2.1020 34 1 -1.8341 -5.9525 -2.3209 35 1 -1.9844 -5.9407 -0.5474 36 1 -4.0891 -7.2456 -1.6115 37 1 -6.3354 -5.6808 -0.9172 38 1 -6.1857 -5.6913 -2.6908 39 1 0.9820 -2.4313 -2.1401 40 1 -0.4033 -1.8133 -1.2064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:44 Heat of formation + Delta-G solvation = -252.749519 kcal Electronic energy + Delta-G solvation = -27561.760818 eV Core-core repulsion = 22960.309259 eV Total energy + Delta-G solvation = -4601.451559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.20119 -48.71811 -48.67054 -41.45408 -40.15554 -38.14179 -36.08598 -35.28852 -33.50235 -32.30937 -31.37371 -29.71006 -26.98292 -25.98777 -24.37957 -23.38048 -22.33021 -21.31214 -19.82594 -19.66413 -19.48673 -19.00636 -18.58493 -18.10304 -17.02389 -16.91153 -16.83998 -16.49767 -16.00894 -15.90661 -15.47383 -15.46616 -15.12389 -15.10399 -14.84439 -14.82291 -14.75564 -14.61639 -14.40679 -14.25912 -14.07238 -13.68900 -13.42358 -12.97742 -12.89076 -12.86341 -12.65053 -12.24897 -12.22820 -11.77147 -11.58859 -11.19787 -10.95684 -10.85251 -10.53721 -10.41583 -10.34506 -9.29907 -8.10130 -6.27653 1.36239 1.39865 1.40024 1.51025 1.55824 1.78530 1.87787 2.37568 2.45323 2.63414 2.95667 3.16319 3.18282 3.46989 3.84495 4.10812 4.15183 4.25941 4.31155 4.39374 4.40020 4.43143 4.67661 4.83729 4.87910 4.95668 5.05005 5.16478 5.31433 5.35918 5.41890 5.57247 5.72345 5.94127 6.04366 6.30488 6.35760 6.78161 6.86673 7.14784 7.42287 7.52681 8.92475 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.002633 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.390773 B =10633.421249 C =11457.752367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.015 1.015 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.100 3.900 14 N -0.613 5.613 15 C 0.489 3.511 16 O -0.567 6.567 17 C -0.146 4.146 18 C 0.518 3.482 19 O -0.543 6.543 20 N -0.718 5.718 21 C 0.077 3.923 22 C 0.463 3.537 23 F -0.179 7.179 24 F -0.178 7.178 25 F -0.178 7.178 26 C 0.127 3.873 27 H 0.258 0.742 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.052 0.948 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.423 0.577 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.032 0.968 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 -23.836 -4.448 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.003 0.997 11 C -0.145 4.145 12 C -0.166 4.166 13 C -0.021 4.021 14 N -0.346 5.346 15 C 0.276 3.724 16 O -0.445 6.445 17 C -0.188 4.188 18 C 0.304 3.696 19 O -0.418 6.418 20 N -0.376 5.376 21 C -0.049 4.049 22 C 0.408 3.592 23 F -0.160 7.160 24 F -0.159 7.159 25 F -0.159 7.159 26 C 0.004 3.996 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.098 0.902 34 H 0.188 0.812 35 H 0.181 0.819 36 H 0.262 0.738 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.051 0.949 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.146 -22.427 -4.523 24.285 hybrid contribution 0.195 1.062 0.172 1.093 sum -7.951 -21.365 -4.351 23.208 Atomic orbital electron populations 1.70114 1.07461 1.27110 1.50732 1.25920 0.95516 1.03005 0.94752 0.85578 0.78781 0.79192 0.78264 1.20086 1.21503 1.18527 1.21559 0.93275 0.91693 1.50916 0.92023 1.18900 0.93127 0.93800 0.92272 0.99725 1.21527 0.97650 0.94604 1.00712 1.21860 0.99157 0.97713 0.97888 1.22019 0.94001 0.87204 0.98846 1.48528 1.05917 1.08654 1.71530 1.20954 0.82287 0.92022 0.77137 1.90852 1.61871 1.41677 1.50070 1.21666 0.90893 0.95847 1.10389 1.20511 0.89739 0.83551 0.75768 1.90922 1.75474 1.27509 1.47852 1.45452 1.04933 1.10164 1.77047 1.22435 0.82673 0.91652 1.08095 1.20301 0.76941 0.88229 0.73739 1.93233 1.92695 1.81856 1.48232 1.93224 1.30858 1.96062 1.95754 1.93235 1.87139 1.81182 1.54367 1.21583 0.96900 0.83446 0.97640 0.93328 0.92582 0.93330 0.87548 0.92891 0.85655 0.90208 0.81216 0.81933 0.73791 0.86941 0.86674 0.94937 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.34 11.39 21.45 0.24 -57.09 16 2 C 0.01 0.42 5.30 84.66 0.45 0.87 16 3 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -29.82 8.57 25.60 0.22 -29.60 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.04 1.92 2.25 -11.46 -0.03 1.90 16 10 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 11 C -0.11 -3.97 5.11 30.62 0.16 -3.81 16 12 C -0.13 -3.29 6.06 30.53 0.19 -3.11 16 13 C 0.10 2.32 6.32 86.22 0.54 2.86 16 14 N -0.61 -22.82 2.98 -819.72 -2.44 -25.26 16 15 C 0.49 18.63 7.69 87.66 0.67 19.31 16 16 O -0.57 -30.08 13.59 20.40 0.28 -29.81 16 17 C -0.15 -2.97 4.53 29.10 0.13 -2.83 16 18 C 0.52 13.11 7.82 87.66 0.69 13.80 16 19 O -0.54 -21.55 14.18 20.42 0.29 -21.26 16 20 N -0.72 -10.73 5.42 -463.06 -2.51 -13.23 16 21 C 0.08 1.13 5.64 86.38 0.49 1.62 16 22 C 0.46 5.81 3.11 71.98 0.22 6.03 16 23 F -0.18 -2.37 17.18 44.97 0.77 -1.60 16 24 F -0.18 -2.60 17.32 44.97 0.78 -1.82 16 25 F -0.18 -2.28 17.18 44.97 0.77 -1.51 16 26 C 0.13 6.34 5.40 86.36 0.47 6.81 16 27 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 28 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.13 1.51 5.93 -2.39 -0.01 1.50 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.17 1.73 7.95 -2.38 -0.02 1.71 16 35 H 0.16 1.95 7.68 -2.39 -0.02 1.93 16 36 H 0.42 3.14 8.36 -92.71 -0.78 2.37 16 37 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.03 1.61 8.14 -2.38 -0.02 1.60 16 40 H 0.07 4.25 5.12 -2.39 -0.01 4.24 16 Total: -1.00 -88.48 342.27 4.72 -83.75 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.31 Total: 6.82 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 4.20 Total: 13.84 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -4.70 Total: -95.59 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: 0.57 Total: -51.06 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 2.32 Total: -4.93 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -88.48 4.72 -83.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.998 kcal (2) G-P(sol) polarization free energy of solvation -88.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds