Wall clock time and date at job start Sat Apr 11 2020 00:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 120.00230 * 2 1 4 4 H 1.48497 * 109.46576 * 270.00034 * 3 2 1 5 5 H 1.48497 * 109.46716 * 29.99571 * 3 2 1 6 6 H 1.48500 * 109.47345 * 149.99738 * 3 2 1 7 7 C 1.39946 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99996 * 191.64816 * 7 2 1 9 9 C 1.41399 * 120.00566 * 11.65757 * 7 2 1 10 10 C 1.40442 * 119.96271 * 30.64640 * 9 7 2 11 11 C 1.37603 * 119.53850 * 180.40619 * 10 9 7 12 12 C 1.38379 * 119.99094 * 0.17253 * 11 10 9 13 13 C 1.39249 * 121.04747 * 359.79890 * 12 11 10 14 14 C 1.37079 * 119.98108 * 359.58749 * 13 12 11 15 15 C 1.50577 * 122.99501 * 181.73551 * 14 13 12 16 16 C 1.53277 * 110.84828 * 339.60537 * 15 14 13 17 17 N 1.47243 * 107.60285 * 47.54147 * 16 15 14 18 18 C 1.34780 * 121.34154 * 116.00639 * 17 16 15 19 19 O 1.21278 * 120.00190 * 5.31005 * 18 17 16 20 20 C 1.50703 * 119.99827 * 185.31009 * 18 17 16 21 21 N 1.46905 * 115.54993 * 325.22251 * 20 18 17 22 22 C 1.52999 * 117.49964 * 110.89166 * 20 18 17 23 23 C 1.52998 * 117.49816 * 179.55074 * 20 18 17 24 24 F 1.39898 * 117.50194 * 0.02562 * 23 20 18 25 25 F 1.39902 * 117.49433 * 145.02282 * 23 20 18 26 26 C 1.46670 * 117.31230 * 295.72699 * 17 16 15 27 27 H 0.96998 * 119.99909 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.23653 * 0.38554 * 10 9 7 29 29 H 1.08004 * 120.00646 * 180.14790 * 11 10 9 30 30 H 1.07998 * 119.47729 * 179.82543 * 12 11 10 31 31 H 1.09000 * 109.19604 * 100.07477 * 15 14 13 32 32 H 1.09001 * 109.19645 * 219.35417 * 15 14 13 33 33 H 1.09000 * 109.91060 * 288.03199 * 16 15 14 34 34 H 1.09006 * 109.91412 * 167.05269 * 16 15 14 35 35 H 1.00897 * 111.00073 * 344.88366 * 21 20 18 36 36 H 1.00903 * 110.99991 * 108.82908 * 21 20 18 37 37 H 1.09001 * 117.50012 * 214.97947 * 22 20 18 38 38 H 1.09005 * 117.49776 * 359.97438 * 22 20 18 39 39 H 1.08998 * 109.42817 * 164.74070 * 26 17 16 40 40 H 1.08998 * 109.43069 * 284.64180 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0463 -1.4001 5 1 1.4397 2.6526 0.6999 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2120 0.0005 8 1 3.0712 -1.2216 0.1894 9 6 1.3229 -2.4241 -0.2463 10 6 0.1944 -2.4343 -1.0823 11 6 -0.4707 -3.6172 -1.3098 12 6 -0.0284 -4.7851 -0.7138 13 6 1.0894 -4.7889 0.1167 14 6 1.7751 -3.6246 0.3477 15 6 3.0132 -3.5579 1.2021 16 6 3.0954 -4.7683 2.1389 17 7 2.8315 -5.9728 1.3343 18 6 3.7740 -6.9206 1.1611 19 8 4.8312 -6.8392 1.7500 20 6 3.5143 -8.0814 0.2358 21 7 2.1272 -8.5637 0.1984 22 6 4.3187 -8.1422 -1.0642 23 6 4.6275 -9.1183 0.0737 24 9 5.8084 -8.9167 0.7961 25 9 4.2464 -10.4533 -0.0994 26 6 1.4995 -6.1028 0.7341 27 1 -0.4850 0.8400 0.0004 28 1 -0.1494 -1.5199 -1.5431 29 1 -1.3379 -3.6342 -1.9533 30 1 -0.5582 -5.7084 -0.8958 31 1 3.8924 -3.5403 0.5582 32 1 2.9883 -2.6458 1.7985 33 1 2.3471 -4.6795 2.9266 34 1 4.0904 -4.8297 2.5797 35 1 1.5986 -8.2055 0.9796 36 1 1.6851 -8.3257 -0.6768 37 1 3.8188 -8.5405 -1.9472 38 1 5.0355 -7.3424 -1.2505 39 1 1.5225 -6.8738 -0.0360 40 1 0.7803 -6.3809 1.5044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602573789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:51 Heat of formation + Delta-G solvation = -71.245901 kcal Electronic energy + Delta-G solvation = -27605.850868 eV Core-core repulsion = 23443.039121 eV Total energy + Delta-G solvation = -4162.811747 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.123 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.63902 -48.31734 -41.77393 -39.86666 -37.75692 -37.24561 -35.45081 -33.89291 -32.20859 -31.84928 -30.37616 -27.26737 -26.82783 -25.15119 -23.93391 -23.41627 -22.40370 -21.43146 -20.06604 -18.97541 -18.80022 -17.98454 -17.66640 -17.32394 -17.05914 -17.01464 -16.63267 -16.31861 -16.04199 -15.56008 -15.21046 -15.12038 -14.92489 -14.79282 -14.53015 -14.44423 -14.21878 -14.12064 -13.77866 -13.51016 -13.24902 -13.09940 -12.87060 -12.79928 -12.62245 -12.52625 -12.14666 -11.95651 -11.56956 -11.42847 -11.31144 -11.09718 -11.04146 -9.87531 -9.69535 -9.12174 -9.02480 -8.57935 -6.33370 0.98177 1.04036 1.05062 1.37516 1.47726 1.49969 1.52996 1.94079 2.20208 2.24562 2.68861 2.75910 2.99719 3.29575 3.53665 3.63210 3.82732 4.02815 4.13430 4.21771 4.28774 4.40864 4.42577 4.48359 4.64110 4.70811 4.74211 4.82858 5.02270 5.12238 5.19158 5.27811 5.33703 5.51689 5.58756 5.77225 5.95782 6.13355 6.16406 6.17664 6.22864 6.43282 6.73827 6.83538 6.98326 7.06966 8.38418 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.003568 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.509404 B = 7846.643352 C = 8597.541871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.037 3.963 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.494 4.494 8 H 0.073 0.927 9 C 0.079 3.921 10 C -0.185 4.185 11 C -0.113 4.113 12 C -0.217 4.217 13 C -0.083 4.083 14 C -0.184 4.184 15 C -0.061 4.061 16 C 0.119 3.881 17 N -0.595 5.595 18 C 0.529 3.471 19 O -0.559 6.559 20 C 0.015 3.985 21 N -0.790 5.790 22 C -0.128 4.128 23 C 0.219 3.781 24 F -0.163 7.163 25 F -0.151 7.151 26 C 0.129 3.871 27 H 0.284 0.716 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.133 0.867 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.370 0.630 36 H 0.377 0.623 37 H 0.173 0.827 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -12.554 -1.987 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.524 4.524 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.205 4.205 11 C -0.131 4.131 12 C -0.237 4.237 13 C -0.083 4.083 14 C -0.185 4.185 15 C -0.099 4.099 16 C -0.003 4.003 17 N -0.326 5.326 18 C 0.315 3.685 19 O -0.436 6.436 20 C -0.084 4.084 21 N -0.333 5.333 22 C -0.167 4.167 23 C 0.180 3.820 24 F -0.143 7.143 25 F -0.131 7.131 26 C 0.007 3.993 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.190 0.810 36 H 0.200 0.800 37 H 0.190 0.810 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.224 -13.104 -1.563 13.383 hybrid contribution -0.025 2.243 0.121 2.247 sum 2.199 -10.861 -1.443 11.175 Atomic orbital electron populations 1.69853 1.08639 1.29995 1.37549 1.26575 0.95449 1.03941 0.91698 0.85348 0.79135 0.76888 0.79265 1.19059 1.19600 1.18448 1.19735 0.96107 0.91652 1.44937 0.90935 1.17943 0.92259 0.92633 0.89420 1.21192 1.00172 0.96939 1.02171 1.20912 0.98970 0.93295 0.99926 1.20642 1.00069 0.98005 1.04935 1.19483 0.96509 0.93562 0.98788 1.19618 1.00677 0.93691 1.04532 1.20395 0.95162 0.97581 0.96730 1.21764 1.02715 0.82680 0.93163 1.48038 1.13698 1.20470 1.50366 1.20048 0.83464 0.83004 0.81965 1.90750 1.26397 1.77613 1.48850 1.22511 0.91935 0.93128 1.00842 1.58324 0.98811 1.65389 1.10823 1.24889 1.00137 0.98910 0.92767 1.20290 0.83561 0.77908 1.00249 1.93064 1.47546 1.94515 1.79190 1.93027 1.90583 1.34112 1.95392 1.21577 0.82371 0.96532 0.98818 0.90584 0.89137 0.87186 0.84881 0.93667 0.91302 0.89793 0.89427 0.80983 0.79981 0.80982 0.84989 0.85709 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.55 11.01 21.83 0.24 -42.31 16 2 C 0.04 1.81 5.21 85.26 0.44 2.25 16 3 Si 0.97 37.80 29.58 68.60 2.03 39.83 16 4 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.49 -25.22 7.92 23.46 0.19 -25.03 16 8 H 0.07 3.62 7.01 -2.91 -0.02 3.60 16 9 C 0.08 3.96 5.54 -21.19 -0.12 3.84 16 10 C -0.19 -9.07 8.62 22.66 0.20 -8.87 16 11 C -0.11 -4.59 10.03 22.15 0.22 -4.37 16 12 C -0.22 -7.46 9.63 22.55 0.22 -7.24 16 13 C -0.08 -2.89 5.82 -19.85 -0.12 -3.00 16 14 C -0.18 -7.81 5.82 -19.40 -0.11 -7.93 16 15 C -0.06 -2.34 4.99 29.90 0.15 -2.19 16 16 C 0.12 3.79 6.48 86.33 0.56 4.35 16 17 N -0.59 -17.01 2.93 -823.00 -2.41 -19.42 16 18 C 0.53 15.67 7.29 87.66 0.64 16.31 16 19 O -0.56 -20.67 14.64 -3.02 -0.04 -20.71 16 20 C 0.02 0.34 2.70 2.78 0.01 0.35 16 21 N -0.79 -12.84 8.55 -154.51 -1.32 -14.16 16 22 C -0.13 -2.28 10.06 30.62 0.31 -1.98 16 23 C 0.22 5.40 5.18 30.62 0.16 5.56 16 24 F -0.16 -5.06 15.71 44.97 0.71 -4.35 16 25 F -0.15 -3.71 17.43 44.97 0.78 -2.92 16 26 C 0.13 3.16 4.52 85.65 0.39 3.55 16 27 H 0.28 13.28 8.30 -92.71 -0.77 12.51 16 28 H 0.09 4.79 6.40 -2.91 -0.02 4.78 16 29 H 0.11 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.13 3.40 8.05 -2.91 -0.02 3.37 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.81 7.09 -2.39 -0.02 2.79 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.09 2.83 7.08 -2.38 -0.02 2.81 16 35 H 0.37 5.70 6.27 -89.70 -0.56 5.14 16 36 H 0.38 4.18 7.62 -89.69 -0.68 3.50 16 37 H 0.17 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.13 2.25 3.71 -2.54 -0.01 2.24 16 40 H 0.10 2.05 7.96 -2.39 -0.02 2.03 16 Total: -1.00 -64.45 331.05 2.99 -61.46 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.12 Total: 27.00 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 3.13 Total: -24.41 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -3.49 Total: -75.89 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.04 Total: -20.71 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 1.49 Total: -7.27 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -64.45 2.99 -61.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602573789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.789 kcal (2) G-P(sol) polarization free energy of solvation -64.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds