Wall clock time and date at job start Sat Apr 11 2020 00:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00068 * 2 1 4 4 H 1.48499 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47334 * 300.00642 * 3 2 1 6 6 H 1.48502 * 109.46827 * 60.00420 * 3 2 1 7 7 C 1.37875 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00142 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47035 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47219 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00310 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47363 * 179.97438 * 13 12 11 15 15 C 1.38239 * 119.94519 * 260.00430 * 14 13 12 16 16 C 1.38650 * 120.06678 * 179.97438 * 15 14 13 17 17 C 1.39015 * 119.82455 * 359.89929 * 16 15 14 18 18 C 1.38660 * 119.81678 * 0.19705 * 17 16 15 19 19 C 1.38203 * 119.94156 * 80.02088 * 14 13 12 20 20 N 1.48003 * 119.94514 * 0.04974 * 19 14 13 21 21 O 1.21800 * 120.00070 * 179.97438 * 20 19 14 22 22 O 1.21805 * 119.99924 * 359.97438 * 20 19 14 23 23 O 1.36105 * 120.77781 * 180.46867 * 17 16 15 24 24 C 1.43202 * 116.69105 * 342.55709 * 23 17 16 25 25 C 1.53466 * 108.23418 * 46.28079 * 24 23 17 26 26 O 1.36110 * 119.40399 * 179.72913 * 16 15 14 27 27 H 0.96999 * 119.99922 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46817 * 59.99598 * 9 7 2 29 29 H 1.09001 * 109.46611 * 299.99830 * 9 7 2 30 30 H 1.08997 * 109.46832 * 59.99508 * 10 9 7 31 31 H 1.08994 * 109.46894 * 299.99669 * 10 9 7 32 32 H 1.08996 * 109.47488 * 59.99557 * 11 10 9 33 33 H 1.09007 * 109.47150 * 299.99986 * 11 10 9 34 34 H 1.00898 * 111.00202 * 303.95646 * 12 11 10 35 35 H 1.08998 * 109.46516 * 60.00179 * 13 12 11 36 36 H 1.08994 * 109.46992 * 300.00287 * 13 12 11 37 37 H 1.08005 * 119.96526 * 359.97438 * 15 14 13 38 38 H 1.08007 * 119.97096 * 179.84966 * 18 17 16 39 39 H 1.08996 * 109.74350 * 286.57917 * 24 23 17 40 40 H 1.09001 * 109.68625 * 165.94759 * 24 23 17 41 41 H 1.09008 * 109.70215 * 180.56560 * 25 24 23 42 42 H 1.09000 * 109.71328 * 59.94148 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 7 2.4347 -6.1037 -0.0049 13 6 1.7344 -7.3950 -0.0048 14 6 2.7439 -8.5140 -0.0072 15 6 3.0500 -9.1647 -1.1878 16 6 3.9788 -10.1942 -1.1929 17 6 4.6026 -10.5685 -0.0083 18 6 4.2895 -9.9130 1.1728 19 6 3.3618 -8.8880 1.1711 20 7 3.0301 -8.1897 2.4332 21 8 3.5737 -8.5189 3.4723 22 8 2.2136 -7.2859 2.4328 23 8 5.5241 -11.5700 0.0073 24 6 5.5359 -12.4509 -1.1216 25 6 5.4729 -11.5987 -2.3963 26 8 4.2659 -10.8293 -2.3619 27 1 -0.4850 0.8400 0.0004 28 1 0.6246 -2.5563 -0.8920 29 1 0.6240 -2.5575 0.8880 30 1 2.8719 -3.6051 0.8872 31 1 2.8718 -3.6036 -0.8927 32 1 0.8532 -5.0443 -0.8930 33 1 0.8538 -5.0454 0.8869 34 1 3.0691 -6.0360 -0.7866 35 1 1.1087 -7.4689 -0.8942 36 1 1.1105 -7.4699 0.8857 37 1 2.5652 -8.8709 -2.1071 38 1 4.7708 -10.2034 2.0951 39 1 4.6722 -13.1144 -1.0799 40 1 6.4531 -13.0399 -1.1182 41 1 5.4705 -12.2474 -3.2724 42 1 6.3335 -10.9309 -2.4351 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609140471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:42:56 Heat of formation + Delta-G solvation = -70.266508 kcal Electronic energy + Delta-G solvation = -26625.547754 eV Core-core repulsion = 22573.865993 eV Total energy + Delta-G solvation = -4051.681762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.27678 -42.46639 -39.63387 -38.58558 -37.80686 -37.30773 -35.48622 -33.67330 -32.82617 -32.02832 -30.34011 -28.73568 -27.45427 -26.00066 -25.13805 -24.16380 -23.54786 -22.24069 -21.78702 -20.30691 -19.74307 -19.40939 -18.57914 -18.43900 -18.40408 -17.68079 -16.83485 -16.60193 -16.52136 -16.19364 -15.78778 -15.59355 -15.56637 -15.33058 -15.28647 -14.58314 -14.41188 -14.00881 -13.86496 -13.55955 -13.27809 -12.99833 -12.68669 -12.66110 -12.44740 -12.42595 -12.19727 -12.14492 -12.11859 -11.77876 -11.71508 -11.45026 -11.35099 -11.07892 -10.53144 -10.22004 -9.62825 -9.32202 -8.17893 -6.28386 -1.25622 -0.29794 0.23671 0.42638 1.40334 1.41597 1.54773 1.64298 1.97307 2.04918 2.42745 2.85016 3.15029 3.19074 3.32180 3.42836 3.55071 3.68118 3.89652 3.94139 4.18798 4.24142 4.30823 4.32819 4.43730 4.44859 4.55510 4.58577 4.66572 4.76929 4.78965 4.90355 5.02309 5.18934 5.28786 5.42090 5.54854 5.55772 5.80272 5.89493 5.98379 6.00736 6.30039 6.48059 6.61621 6.88616 7.40379 8.94248 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019245 B = 0.002372 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.593081 B =11799.724917 C =12508.492913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.091 4.091 11 C 0.080 3.920 12 N -0.682 5.682 13 C 0.085 3.915 14 C -0.009 4.009 15 C -0.106 4.106 16 C 0.114 3.886 17 C 0.054 3.946 18 C -0.059 4.059 19 C -0.040 4.040 20 N 0.036 4.964 21 O -0.204 6.204 22 O -0.145 6.145 23 O -0.311 6.311 24 C 0.012 3.988 25 C 0.009 3.991 26 O -0.302 6.302 27 H 0.263 0.737 28 H -0.005 1.005 29 H -0.009 1.009 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.342 0.658 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.179 0.821 38 H 0.166 0.834 39 H 0.091 0.909 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.706 -32.365 -7.668 35.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.048 4.048 12 N -0.314 5.314 13 C -0.043 4.043 14 C -0.011 4.011 15 C -0.125 4.125 16 C 0.067 3.933 17 C 0.007 3.993 18 C -0.079 4.079 19 C -0.124 4.124 20 N 0.550 4.450 21 O -0.410 6.410 22 O -0.364 6.364 23 O -0.226 6.226 24 C -0.062 4.062 25 C -0.065 4.065 26 O -0.215 6.215 27 H 0.072 0.928 28 H 0.013 0.987 29 H 0.009 0.991 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.197 0.803 38 H 0.183 0.817 39 H 0.109 0.891 40 H 0.180 0.820 41 H 0.183 0.817 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.887 -32.680 -7.582 35.592 hybrid contribution -0.188 1.102 -0.269 1.149 sum 11.699 -31.578 -7.850 34.579 Atomic orbital electron populations 1.70104 1.07721 1.27656 1.51863 1.25987 0.95819 1.03347 0.94824 0.85397 0.78989 0.78801 0.77841 1.18790 1.20101 1.20416 1.21724 0.93440 0.92524 1.50241 0.92505 1.18967 0.94410 0.92931 0.94895 1.21350 0.98028 0.93155 1.00378 1.21768 0.93648 0.89228 1.00168 1.60289 1.20427 1.00566 1.50108 1.21225 0.93416 0.85779 1.03899 1.19519 0.95592 0.96136 0.89874 1.20515 0.99453 0.94045 0.98522 1.19165 0.96108 0.93002 0.85036 1.18331 0.95690 0.93587 0.91656 1.20080 0.95145 0.93448 0.99177 1.20498 1.06602 1.01127 0.84203 1.43660 0.98990 0.99676 1.02642 1.94488 1.54178 1.70434 1.21881 1.94589 1.27656 1.21183 1.92934 1.86370 1.51288 1.39284 1.45616 1.24171 1.07951 0.91062 0.83059 1.24217 0.85121 0.95460 1.01669 1.86392 1.43252 1.62104 1.29738 0.92779 0.98658 0.99078 0.93661 0.93022 0.94841 0.91842 0.83950 0.91455 0.88301 0.80320 0.81674 0.89125 0.82032 0.81713 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.19 13.29 21.45 0.28 -57.90 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.94 5.41 30.59 0.17 -3.78 16 11 C 0.08 2.84 5.68 86.30 0.49 3.33 16 12 N -0.68 -20.03 5.74 -517.94 -2.97 -23.01 16 13 C 0.09 2.04 4.83 85.56 0.41 2.46 16 14 C -0.01 -0.19 5.39 -19.87 -0.11 -0.30 16 15 C -0.11 -1.69 9.58 22.37 0.21 -1.48 16 16 C 0.11 1.74 6.49 22.55 0.15 1.89 16 17 C 0.05 0.91 6.49 22.56 0.15 1.05 16 18 C -0.06 -1.21 9.47 22.37 0.21 -1.00 16 19 C -0.04 -0.98 6.84 36.37 0.25 -0.73 16 20 N 0.04 1.15 4.45 -46.49 -0.21 0.94 16 21 O -0.20 -6.71 18.44 18.89 0.35 -6.36 16 22 O -0.14 -5.07 14.74 18.88 0.28 -4.79 16 23 O -0.31 -4.14 10.42 -82.53 -0.86 -5.00 16 24 C 0.01 0.05 7.26 72.14 0.52 0.57 16 25 C 0.01 0.03 7.26 72.14 0.52 0.56 16 26 O -0.30 -3.45 10.42 -82.58 -0.86 -4.31 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 34 H 0.34 8.98 8.72 -89.70 -0.78 8.19 16 35 H 0.07 1.30 8.00 -2.39 -0.02 1.28 16 36 H 0.10 2.71 5.87 -2.39 -0.01 2.70 16 37 H 0.18 2.04 8.03 -2.91 -0.02 2.02 16 38 H 0.17 3.23 7.60 -2.91 -0.02 3.20 16 39 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.16 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.17 -0.55 8.14 -2.38 -0.02 -0.57 16 42 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -76.03 358.31 2.13 -73.89 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.27 Total: 6.21 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 3.82 Total: -27.36 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -2.89 Total: -79.97 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -1.09 Total: -20.46 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -76.03 2.13 -73.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609140471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.628 kcal (2) G-P(sol) polarization free energy of solvation -76.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds