Wall clock time and date at job start Sat Apr 11 2020 00:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38280 * 119.94374 * 2 1 4 4 C 1.38269 * 120.15624 * 180.02562 * 3 2 1 5 5 C 1.38302 * 120.04893 * 359.97438 * 4 3 2 6 6 F 1.35098 * 120.05788 * 179.97438 * 5 4 3 7 7 C 1.39058 * 119.88873 * 359.97438 * 5 4 3 8 8 N 1.40024 * 120.07972 * 179.97438 * 7 5 4 9 9 C 1.34772 * 119.99829 * 227.52548 * 8 7 5 10 10 S 1.71201 * 120.00376 * 355.71960 * 9 8 7 11 11 N 1.34783 * 119.99590 * 175.72436 * 9 8 7 12 12 C 1.46507 * 119.99739 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46624 * 269.99746 * 12 11 9 14 14 H 1.07997 * 120.00761 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99631 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99747 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00004 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47131 * 60.00503 * 17 15 13 19 19 H 1.48500 * 109.46870 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47236 * 300.00195 * 17 15 13 21 21 C 1.46489 * 120.00034 * 359.97438 * 11 9 8 22 22 C 1.53002 * 109.47201 * 270.00183 * 21 11 9 23 23 C 1.53004 * 117.49696 * 243.62153 * 22 21 11 24 24 C 1.53001 * 60.00079 * 252.51295 * 23 22 21 25 25 C 1.38153 * 119.94414 * 180.22378 * 2 1 3 26 26 H 1.08999 * 109.46710 * 90.00564 * 1 2 3 27 27 H 1.09000 * 109.46992 * 210.00463 * 1 2 3 28 28 H 1.08991 * 109.47112 * 330.00442 * 1 2 3 29 29 H 1.07993 * 119.92291 * 359.97438 * 3 2 1 30 30 H 1.08006 * 119.97636 * 179.97438 * 4 3 2 31 31 H 0.96992 * 119.99803 * 47.53072 * 8 7 5 32 32 H 1.08998 * 109.47208 * 29.99277 * 12 11 9 33 33 H 1.08993 * 109.47091 * 149.99634 * 12 11 9 34 34 H 0.97007 * 119.99749 * 179.97438 * 16 15 13 35 35 H 1.09006 * 109.47300 * 150.00043 * 21 11 9 36 36 H 1.09002 * 109.47361 * 30.00373 * 21 11 9 37 37 H 1.08991 * 115.54960 * 29.33151 * 22 21 11 38 38 H 1.09001 * 117.49840 * 0.02562 * 23 22 21 39 39 H 1.08997 * 117.49469 * 145.01987 * 23 22 21 40 40 H 1.09003 * 117.49715 * 252.51732 * 24 23 22 41 41 H 1.08992 * 117.49964 * 107.49060 * 24 23 22 42 42 H 1.07997 * 120.02376 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5799 1.2033 -0.0005 5 6 4.2769 0.0088 -0.0005 6 9 5.6278 0.0136 -0.0016 7 6 3.5847 -1.1973 0.0005 8 7 4.2863 -2.4091 0.0000 9 6 3.9409 -3.3873 -0.8603 10 16 2.5768 -3.1918 -1.8761 11 7 4.6694 -4.5197 -0.9208 12 6 4.2942 -5.5829 -1.8563 13 6 3.3390 -6.5325 -1.1805 14 1 3.0407 -6.3611 -0.1568 15 6 2.8448 -7.6198 -1.8696 16 7 3.2076 -7.8283 -3.1164 17 14 1.6612 -8.7973 -1.0318 18 1 0.4450 -8.0584 -0.6078 19 1 1.2809 -9.8749 -1.9801 20 1 2.3174 -9.3951 0.1587 21 6 5.8369 -4.6869 -0.0519 22 6 7.0819 -4.1514 -0.7620 23 6 8.1924 -5.1512 -1.0910 24 6 8.3913 -4.1282 0.0292 25 6 2.1966 -1.1971 -0.0047 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8899 0.5137 29 1 1.6551 2.1322 -0.0004 30 1 4.1161 2.1409 -0.0010 31 1 5.0209 -2.5444 0.6188 32 1 3.8131 -5.1445 -2.7306 33 1 5.1871 -6.1254 -2.1668 34 1 2.8602 -8.5934 -3.6011 35 1 5.9737 -5.7446 0.1734 36 1 5.6819 -4.1350 0.8752 37 1 6.9074 -3.3415 -1.4702 38 1 8.0358 -6.1905 -0.8019 39 1 8.7486 -4.9992 -2.0160 40 1 9.0783 -3.3032 -0.1589 41 1 8.3657 -4.4943 1.0555 42 1 1.6561 -2.1321 -0.0087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728790330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:13 Heat of formation + Delta-G solvation = 30.553197 kcal Electronic energy + Delta-G solvation = -24905.635761 eV Core-core repulsion = 21313.451530 eV Total energy + Delta-G solvation = -3592.184231 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.85091 -39.96157 -38.72301 -36.89712 -35.17053 -32.67519 -32.10903 -29.85851 -28.40249 -27.10039 -26.41895 -23.96312 -22.55357 -22.34787 -21.82907 -21.36961 -20.26254 -18.16634 -17.64823 -17.06575 -16.56552 -16.26018 -15.64258 -15.51449 -15.32537 -14.70271 -14.45015 -14.24536 -13.82804 -13.63531 -13.48342 -13.47574 -13.10545 -12.66748 -12.40761 -11.96490 -11.78946 -11.69850 -11.54073 -11.45265 -11.38310 -11.19878 -10.95829 -10.72475 -10.63224 -10.27878 -10.20619 -9.97276 -9.91118 -9.11247 -8.56733 -8.47259 -8.02133 -6.99714 -6.30407 -6.08713 -4.13147 1.08267 1.35524 2.07737 2.54223 3.17590 3.29999 3.35576 3.39144 3.56202 3.67998 3.81625 4.28058 4.41553 4.67172 4.78151 4.81739 4.91564 4.95341 5.21370 5.26296 5.26898 5.28816 5.33177 5.51820 5.56545 5.66339 5.73588 5.77628 5.88914 5.91128 6.08243 6.13213 6.18217 6.18748 6.31960 6.42389 6.52985 6.72189 7.04271 7.09992 7.40258 7.48301 7.84283 7.87400 8.09258 8.84742 9.49754 10.99732 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.010644 B = 0.005006 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.052026 B = 5591.519136 C = 7743.069593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.094 4.094 3 C -0.094 4.094 4 C -0.153 4.153 5 C 0.079 3.921 6 F -0.142 7.142 7 C 0.116 3.884 8 N -0.652 5.652 9 C 0.554 3.446 10 S -0.627 6.627 11 N -0.526 5.526 12 C 0.238 3.762 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.069 3.931 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.279 1.279 21 C 0.123 3.877 22 C -0.174 4.174 23 C -0.167 4.167 24 C -0.176 4.176 25 C -0.040 4.040 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.402 0.598 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.407 14.437 9.602 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.113 4.113 4 C -0.173 4.173 5 C 0.057 3.943 6 F -0.121 7.121 7 C 0.020 3.980 8 N -0.283 5.283 9 C 0.197 3.803 10 S -0.491 6.491 11 N -0.229 5.229 12 C 0.120 3.880 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.134 4.134 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.205 1.205 21 C -0.004 4.004 22 C -0.194 4.194 23 C -0.204 4.204 24 C -0.213 4.213 25 C -0.063 4.063 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.242 0.758 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.619 14.184 8.675 17.256 hybrid contribution 0.869 -0.903 1.095 1.664 sum 5.488 13.281 9.771 17.377 Atomic orbital electron populations 1.20722 0.90570 1.02492 1.02712 1.19787 0.96608 0.92134 1.01093 1.20847 0.92856 0.97944 0.99677 1.20790 0.94860 0.96066 1.05620 1.17589 0.76576 0.93464 1.06708 1.91455 1.29009 1.97371 1.94257 1.17319 0.91733 0.82618 1.06307 1.42145 1.36163 1.12759 1.37193 1.22328 0.90672 0.81656 0.85688 1.93098 1.20012 1.87576 1.48437 1.47877 1.23195 1.14838 1.36954 1.20019 0.96772 0.82378 0.88805 1.21064 1.27731 1.08355 0.98965 0.92632 1.24814 0.96196 0.97620 0.94735 1.69912 1.44095 1.29331 1.09359 0.86543 0.81621 0.80208 0.78972 1.19972 1.21132 1.20468 1.21395 0.83850 1.03296 0.91864 1.22754 0.89910 1.02956 1.03786 1.23025 1.01576 0.96182 0.99618 1.22954 0.98923 1.02357 0.97108 1.21425 0.91610 0.99990 0.93263 0.90856 0.91301 0.91813 0.85313 0.84843 0.75847 0.90376 0.94131 0.92538 0.87922 0.91323 0.87654 0.88146 0.88735 0.88744 0.88631 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.78 16 2 C -0.09 -1.20 5.88 -104.64 -0.62 -1.82 16 3 C -0.09 -1.04 9.69 -39.55 -0.38 -1.43 16 4 C -0.15 -1.79 10.02 -39.55 -0.40 -2.19 16 5 C 0.08 1.11 7.31 -39.25 -0.29 0.83 16 6 F -0.14 -2.02 17.08 2.25 0.04 -1.98 16 7 C 0.12 1.82 5.89 -83.60 -0.49 1.32 16 8 N -0.65 -10.55 5.03 -11.34 -0.06 -10.60 16 9 C 0.55 11.10 7.56 -86.92 -0.66 10.44 16 10 S -0.63 -14.99 24.39 -107.50 -2.62 -17.61 16 11 N -0.53 -10.42 2.46 -177.09 -0.43 -10.85 16 12 C 0.24 5.86 4.92 -5.19 -0.03 5.84 16 13 C -0.52 -14.02 9.39 -34.44 -0.32 -14.35 16 14 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 16 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 17 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.12 1.84 5.49 -4.05 -0.02 1.82 16 22 C -0.17 -2.33 6.01 -90.61 -0.54 -2.88 16 23 C -0.17 -2.03 10.18 -26.73 -0.27 -2.31 16 24 C -0.18 -1.84 10.25 -26.73 -0.27 -2.11 16 25 C -0.04 -0.62 7.53 -39.40 -0.30 -0.92 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.73 8.09 -51.93 -0.42 0.32 16 28 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.40 5.47 6.52 -40.82 -0.27 5.21 16 32 H 0.08 2.20 6.58 -51.93 -0.34 1.86 16 33 H 0.04 1.02 8.07 -51.93 -0.42 0.60 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 35 H 0.10 1.58 7.81 -51.93 -0.41 1.18 16 36 H 0.07 0.86 6.30 -51.93 -0.33 0.54 16 37 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.10 1.23 8.03 -51.93 -0.42 0.82 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.16 2.83 6.30 -49.48 -0.31 2.52 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -31.62 367.41 -11.98 -43.60 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.83 Total: 7.09 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -4.33 Total: -6.71 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.24 Total: -46.37 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -14.99 SS G_CDS: -2.62 Total: -17.61 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.62 -11.98 -43.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728790330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.157 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds