Wall clock time and date at job start Sat Apr 11 2020 00:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38280 * 119.94374 * 2 1 4 4 C 1.38269 * 120.15624 * 180.02562 * 3 2 1 5 5 C 1.38302 * 120.04893 * 359.97438 * 4 3 2 6 6 F 1.35098 * 120.05788 * 179.97438 * 5 4 3 7 7 C 1.39058 * 119.88873 * 359.97438 * 5 4 3 8 8 N 1.40024 * 120.07972 * 179.97438 * 7 5 4 9 9 C 1.34772 * 119.99829 * 227.52548 * 8 7 5 10 10 S 1.71201 * 120.00376 * 355.71960 * 9 8 7 11 11 N 1.34783 * 119.99590 * 175.72436 * 9 8 7 12 12 C 1.46507 * 119.99739 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46624 * 269.99746 * 12 11 9 14 14 H 1.07997 * 120.00761 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99631 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99747 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00004 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47131 * 60.00503 * 17 15 13 19 19 H 1.48500 * 109.46870 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47236 * 300.00195 * 17 15 13 21 21 C 1.46489 * 120.00034 * 359.97438 * 11 9 8 22 22 C 1.53002 * 109.47201 * 270.00183 * 21 11 9 23 23 C 1.53004 * 117.49696 * 243.62153 * 22 21 11 24 24 C 1.53001 * 60.00079 * 252.51295 * 23 22 21 25 25 C 1.38153 * 119.94414 * 180.22378 * 2 1 3 26 26 H 1.08999 * 109.46710 * 90.00564 * 1 2 3 27 27 H 1.09000 * 109.46992 * 210.00463 * 1 2 3 28 28 H 1.08991 * 109.47112 * 330.00442 * 1 2 3 29 29 H 1.07993 * 119.92291 * 359.97438 * 3 2 1 30 30 H 1.08006 * 119.97636 * 179.97438 * 4 3 2 31 31 H 0.96992 * 119.99803 * 47.53072 * 8 7 5 32 32 H 1.08998 * 109.47208 * 29.99277 * 12 11 9 33 33 H 1.08993 * 109.47091 * 149.99634 * 12 11 9 34 34 H 0.97007 * 119.99749 * 179.97438 * 16 15 13 35 35 H 1.09006 * 109.47300 * 150.00043 * 21 11 9 36 36 H 1.09002 * 109.47361 * 30.00373 * 21 11 9 37 37 H 1.08991 * 115.54960 * 29.33151 * 22 21 11 38 38 H 1.09001 * 117.49840 * 0.02562 * 23 22 21 39 39 H 1.08997 * 117.49469 * 145.01987 * 23 22 21 40 40 H 1.09003 * 117.49715 * 252.51732 * 24 23 22 41 41 H 1.08992 * 117.49964 * 107.49060 * 24 23 22 42 42 H 1.07997 * 120.02376 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5799 1.2033 -0.0005 5 6 4.2769 0.0088 -0.0005 6 9 5.6278 0.0136 -0.0016 7 6 3.5847 -1.1973 0.0005 8 7 4.2863 -2.4091 0.0000 9 6 3.9409 -3.3873 -0.8603 10 16 2.5768 -3.1918 -1.8761 11 7 4.6694 -4.5197 -0.9208 12 6 4.2942 -5.5829 -1.8563 13 6 3.3390 -6.5325 -1.1805 14 1 3.0407 -6.3611 -0.1568 15 6 2.8448 -7.6198 -1.8696 16 7 3.2076 -7.8283 -3.1164 17 14 1.6612 -8.7973 -1.0318 18 1 0.4450 -8.0584 -0.6078 19 1 1.2809 -9.8749 -1.9801 20 1 2.3174 -9.3951 0.1587 21 6 5.8369 -4.6869 -0.0519 22 6 7.0819 -4.1514 -0.7620 23 6 8.1924 -5.1512 -1.0910 24 6 8.3913 -4.1282 0.0292 25 6 2.1966 -1.1971 -0.0047 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8899 0.5137 29 1 1.6551 2.1322 -0.0004 30 1 4.1161 2.1409 -0.0010 31 1 5.0209 -2.5444 0.6188 32 1 3.8131 -5.1445 -2.7306 33 1 5.1871 -6.1254 -2.1668 34 1 2.8602 -8.5934 -3.6011 35 1 5.9737 -5.7446 0.1734 36 1 5.6819 -4.1350 0.8752 37 1 6.9074 -3.3415 -1.4702 38 1 8.0358 -6.1905 -0.8019 39 1 8.7486 -4.9992 -2.0160 40 1 9.0783 -3.3032 -0.1589 41 1 8.3657 -4.4943 1.0555 42 1 1.6561 -2.1321 -0.0087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728790330.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:12 Heat of formation + Delta-G solvation = 15.340614 kcal Electronic energy + Delta-G solvation = -24906.295428 eV Core-core repulsion = 21313.451530 eV Total energy + Delta-G solvation = -3592.843898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.95109 -41.29713 -39.93711 -37.99855 -36.63497 -34.66670 -33.11957 -31.15302 -29.94194 -28.66174 -27.49243 -25.65111 -23.95664 -23.30078 -23.12251 -22.54525 -21.51572 -19.51806 -19.01835 -18.67552 -18.16173 -17.42991 -16.97297 -16.85410 -16.56204 -16.23110 -16.00595 -15.25051 -15.00582 -14.90653 -14.82958 -14.48195 -14.41485 -14.01711 -13.92737 -13.49047 -13.11491 -12.84741 -12.82813 -12.68111 -12.63419 -12.49832 -12.40196 -12.26388 -12.19332 -12.13597 -11.77423 -11.40784 -11.02472 -10.62232 -10.54108 -9.75811 -9.25723 -8.82033 -8.20833 -8.10761 -6.32381 -0.10296 0.28493 0.58906 0.94632 1.37380 1.42690 1.48186 1.61570 2.18414 2.41213 2.62608 2.77656 3.12529 3.20192 3.58253 3.76240 3.80876 3.94443 3.97301 4.09126 4.20186 4.24224 4.30147 4.46859 4.54108 4.68326 4.74569 4.86695 4.91307 4.94847 4.97112 5.08682 5.13746 5.16811 5.21171 5.21700 5.28372 5.33766 5.55902 5.61366 5.70148 5.83281 5.98100 6.04178 6.30718 6.71343 7.34132 8.87106 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.010644 B = 0.005006 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.052026 B = 5591.519136 C = 7743.069593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C -0.079 4.079 4 C -0.143 4.143 5 C 0.072 3.928 6 F -0.143 7.143 7 C 0.085 3.915 8 N -0.628 5.628 9 C 0.574 3.426 10 S -0.717 6.717 11 N -0.528 5.528 12 C 0.260 3.740 13 C -0.528 4.528 14 H 0.050 0.950 15 C 0.020 3.980 16 N -0.922 5.922 17 Si 0.961 3.039 18 H -0.281 1.281 19 H -0.280 1.280 20 H -0.262 1.262 21 C 0.121 3.879 22 C -0.193 4.193 23 C -0.177 4.177 24 C -0.140 4.140 25 C -0.060 4.060 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.171 0.829 30 H 0.168 0.832 31 H 0.416 0.584 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.266 0.734 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 16.528 11.993 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.097 4.097 4 C -0.163 4.163 5 C 0.050 3.950 6 F -0.122 7.122 7 C -0.010 4.010 8 N -0.258 5.258 9 C 0.212 3.788 10 S -0.584 6.584 11 N -0.230 5.230 12 C 0.139 3.861 13 C -0.567 4.567 14 H 0.069 0.931 15 C -0.180 4.180 16 N -0.561 5.561 17 Si 0.786 3.214 18 H -0.207 1.207 19 H -0.205 1.205 20 H -0.186 1.186 21 C -0.004 4.004 22 C -0.213 4.213 23 C -0.214 4.214 24 C -0.177 4.177 25 C -0.083 4.083 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.189 0.811 30 H 0.185 0.815 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.652 16.326 11.137 20.555 hybrid contribution 0.614 -1.407 0.412 1.590 sum 6.265 14.918 11.549 19.880 Atomic orbital electron populations 1.20771 0.89144 1.03736 1.02748 1.20107 0.97814 0.91887 1.00123 1.21307 0.92789 0.98652 0.96973 1.21242 0.95276 0.96315 1.03435 1.17749 0.76622 0.93573 1.07051 1.91451 1.29071 1.97382 1.94314 1.17565 0.92009 0.82697 1.08718 1.41964 1.35916 1.12156 1.35777 1.21774 0.89284 0.82344 0.85355 1.93202 1.24002 1.89140 1.52049 1.47662 1.24509 1.13846 1.36980 1.19386 0.95577 0.82719 0.88384 1.21276 1.27886 1.08743 0.98750 0.93150 1.25628 0.97754 0.99362 0.95293 1.70028 1.45381 1.30025 1.10696 0.85565 0.79133 0.78120 0.78565 1.20682 1.20546 1.18611 1.21679 0.82645 1.03918 0.92163 1.22561 0.90298 1.03277 1.05164 1.23101 1.01084 0.96289 1.00949 1.23078 0.95819 1.01433 0.97365 1.21259 0.91795 1.00044 0.95178 0.91334 0.92223 0.88451 0.81132 0.81470 0.74146 0.94424 0.94935 0.92481 0.88139 0.88480 0.89527 0.88425 0.88562 0.87110 0.86569 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.43 16 2 C -0.10 -2.38 5.88 -19.87 -0.12 -2.49 16 3 C -0.08 -1.46 9.69 22.29 0.22 -1.24 16 4 C -0.14 -2.85 10.02 22.29 0.22 -2.62 16 5 C 0.07 1.90 7.31 22.48 0.16 2.07 16 6 F -0.14 -3.78 17.08 44.97 0.77 -3.01 16 7 C 0.08 2.65 5.89 38.17 0.22 2.88 16 8 N -0.63 -20.48 5.03 -189.80 -0.95 -21.43 16 9 C 0.57 23.90 7.56 179.05 1.35 25.25 16 10 S -0.72 -36.56 24.39 -56.49 -1.38 -37.94 16 11 N -0.53 -21.61 2.46 -714.18 -1.75 -23.36 16 12 C 0.26 13.41 4.92 85.63 0.42 13.84 16 13 C -0.53 -29.25 9.39 25.60 0.24 -29.01 16 14 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 15 C 0.02 1.10 5.46 84.66 0.46 1.56 16 16 N -0.92 -54.88 13.29 21.45 0.28 -54.60 16 17 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 C 0.12 3.57 5.49 86.38 0.47 4.04 16 22 C -0.19 -5.01 6.01 -10.79 -0.06 -5.07 16 23 C -0.18 -4.13 10.18 30.60 0.31 -3.82 16 24 C -0.14 -2.51 10.25 30.60 0.31 -2.20 16 25 C -0.06 -1.93 7.53 22.39 0.17 -1.76 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.29 8.09 -2.39 -0.02 1.27 16 28 H 0.10 1.26 8.08 -2.39 -0.02 1.24 16 29 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.42 10.96 6.52 -92.71 -0.60 10.35 16 32 H 0.04 2.27 6.58 -2.39 -0.02 2.26 16 33 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 34 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 35 H 0.10 3.04 7.81 -2.38 -0.02 3.02 16 36 H 0.10 2.27 6.30 -2.39 -0.02 2.26 16 37 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.10 2.33 8.03 -2.39 -0.02 2.31 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.12 4.83 6.30 -4.83 -0.03 4.80 16 Total: -1.00 -73.67 367.41 4.52 -69.15 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.42 Total: 24.47 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 5.11 Total: -0.01 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -2.42 Total: -99.39 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.77 Total: -3.01 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: -36.56 SS G_CDS: -1.38 Total: -37.94 kcal Total: -73.67 4.52 -69.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728790330.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.493 kcal (2) G-P(sol) polarization free energy of solvation -73.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds