Wall clock time and date at job start Sat Apr 11 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38373 * 119.39987 * 2 1 4 4 C 1.38321 * 119.46136 * 179.79594 * 3 2 1 5 5 C 1.40045 * 118.34324 * 0.46985 * 4 3 2 6 6 C 1.47392 * 120.59799 * 179.73592 * 5 4 3 7 7 O 1.21515 * 119.99686 * 180.02562 * 6 5 4 8 8 O 1.34744 * 120.00057 * 0.02562 * 6 5 4 9 9 C 1.45205 * 116.99840 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47365 * 329.99850 * 9 8 6 11 11 C 1.53001 * 109.47306 * 90.00368 * 9 8 6 12 12 C 1.50700 * 109.47192 * 210.00056 * 9 8 6 13 13 O 1.21284 * 119.99816 * 0.02562 * 12 9 8 14 14 N 1.34773 * 120.00252 * 180.02562 * 12 9 8 15 15 C 1.46504 * 119.99812 * 359.97438 * 14 12 9 16 16 C 1.46501 * 120.00251 * 180.02562 * 14 12 9 17 17 C 1.50700 * 109.47261 * 89.99745 * 16 14 12 18 18 H 1.08008 * 119.99738 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00271 * 179.97438 * 17 16 14 20 20 N 1.31513 * 119.99767 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00110 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46863 * 60.00363 * 21 19 17 23 23 H 1.48494 * 109.46943 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46927 * 300.00542 * 21 19 17 25 25 C 1.40330 * 118.79745 * 359.75177 * 5 4 3 26 26 O 1.35412 * 119.80693 * 180.02562 * 25 5 4 27 27 N 1.31886 * 119.39892 * 180.27486 * 2 1 3 28 28 H 1.09002 * 109.47152 * 269.72734 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72835 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72816 * 1 2 3 31 31 H 1.07996 * 120.26761 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.82341 * 180.20649 * 4 3 2 33 33 H 1.09000 * 109.47331 * 59.99462 * 11 9 8 34 34 H 1.08997 * 109.47442 * 180.02562 * 11 9 8 35 35 H 1.09007 * 109.46475 * 299.99972 * 11 9 8 36 36 H 1.09001 * 109.46864 * 90.00335 * 15 14 12 37 37 H 1.08996 * 109.46729 * 210.00259 * 15 14 12 38 38 H 1.08995 * 109.46923 * 330.00171 * 15 14 12 39 39 H 1.08995 * 109.47201 * 209.99789 * 16 14 12 40 40 H 1.09000 * 109.47122 * 329.99936 * 16 14 12 41 41 H 0.96998 * 119.99860 * 179.97438 * 20 19 17 42 42 H 0.96709 * 113.99776 * 270.02383 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2055 0.0000 4 6 3.5695 1.2070 0.0043 5 6 4.2357 -0.0248 -0.0016 6 6 5.7086 -0.0812 -0.0033 7 8 6.2754 -1.1560 -0.0088 8 8 6.4264 1.0591 0.0014 9 6 7.8725 0.9277 -0.0011 10 1 8.1545 0.0059 0.5078 11 6 8.3786 0.8887 -1.4445 12 6 8.4851 2.1040 0.7143 13 8 7.7731 2.9679 1.1809 14 7 9.8242 2.1962 0.8357 15 6 10.6843 1.1524 0.2726 16 6 10.4198 3.3395 1.5317 17 6 10.5619 3.0172 2.9970 18 1 10.2411 2.0566 3.3722 19 6 11.1024 3.9483 3.8584 20 7 11.4935 5.1178 3.4014 21 14 11.2792 3.5485 5.6745 22 1 12.1539 2.3594 5.8367 23 1 11.8827 4.7074 6.3800 24 1 9.9410 3.2609 6.2506 25 6 3.4756 -1.2044 -0.0062 26 8 4.0987 -2.4066 -0.0114 27 7 2.1544 -1.1490 -0.0055 28 1 -0.3633 -0.0049 1.0277 29 1 -0.3633 -0.8876 -0.5181 30 1 -0.3633 0.8924 -0.5096 31 1 1.6409 2.1377 -0.0004 32 1 4.1219 2.1350 0.0077 33 1 8.0966 1.8104 -1.9534 34 1 9.4640 0.7896 -1.4464 35 1 7.9354 0.0378 -1.9620 36 1 10.9426 1.4095 -0.7547 37 1 11.5945 1.0719 0.8669 38 1 10.1557 0.1993 0.2867 39 1 11.4021 3.5506 1.1092 40 1 9.7777 4.2122 1.4123 41 1 11.8734 5.7729 4.0075 42 1 4.2797 -2.7520 -0.8964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744551827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:26 Heat of formation + Delta-G solvation = -139.487517 kcal Electronic energy + Delta-G solvation = -26997.154572 eV Core-core repulsion = 22942.471162 eV Total energy + Delta-G solvation = -4054.683410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.26857 -41.38031 -40.36013 -38.47245 -37.48872 -36.74540 -34.97705 -34.41860 -32.90636 -32.70434 -29.64555 -29.12159 -27.75357 -26.09103 -25.22184 -24.24394 -23.86635 -22.27883 -20.50081 -19.81660 -19.36308 -18.70439 -18.47428 -17.65502 -17.53901 -17.28853 -17.09065 -16.66427 -16.41880 -15.93757 -15.48060 -15.12654 -14.87604 -14.82949 -14.50298 -14.26125 -14.10619 -13.73930 -13.65245 -13.53364 -13.34427 -13.16970 -13.13881 -12.99638 -12.82766 -12.72834 -12.62448 -12.43879 -12.21444 -11.97210 -11.84084 -11.74744 -11.12897 -10.75068 -10.66489 -10.61256 -10.01939 -9.54041 -8.25575 -6.40043 -0.73845 -0.02870 1.10006 1.31253 1.35200 1.39070 1.46203 1.59213 2.25165 2.32047 2.40846 2.54857 3.04422 3.30273 3.36521 3.52377 3.63134 3.73544 3.80608 3.83055 4.14003 4.30998 4.35923 4.51380 4.60684 4.65511 4.68005 4.79139 4.83623 4.86671 4.93057 4.98601 5.08973 5.10678 5.15521 5.21044 5.43779 5.48899 5.75937 6.01600 6.40410 6.45902 6.59305 6.68257 6.68904 7.17581 7.33582 8.81539 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.002874 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.625209 B = 9738.688697 C =10382.684882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.182 3.818 3 C -0.184 4.184 4 C -0.003 4.003 5 C -0.224 4.224 6 C 0.512 3.488 7 O -0.507 6.507 8 O -0.337 6.337 9 C 0.080 3.920 10 H 0.113 0.887 11 C -0.166 4.166 12 C 0.500 3.500 13 O -0.578 6.578 14 N -0.599 5.599 15 C 0.067 3.933 16 C 0.261 3.739 17 C -0.549 4.549 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.925 5.925 21 Si 0.965 3.035 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.280 1.280 25 C 0.376 3.624 26 O -0.476 6.476 27 N -0.529 5.529 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.186 0.814 32 H 0.158 0.842 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.035 0.965 40 H 0.002 0.998 41 H 0.269 0.731 42 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.610 -11.693 -13.639 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.045 3.955 3 C -0.204 4.204 4 C -0.028 4.028 5 C -0.229 4.229 6 C 0.357 3.643 7 O -0.397 6.397 8 O -0.253 6.253 9 C 0.022 3.978 10 H 0.131 0.869 11 C -0.223 4.223 12 C 0.287 3.713 13 O -0.458 6.458 14 N -0.331 5.331 15 C -0.075 4.075 16 C 0.140 3.860 17 C -0.587 4.587 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.789 3.211 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.206 1.206 25 C 0.196 3.804 26 O -0.286 6.286 27 N -0.250 5.250 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.204 0.796 32 H 0.176 0.824 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.078 0.922 42 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -18.079 -12.151 -12.784 25.257 hybrid contribution 1.166 0.670 0.767 1.548 sum -16.914 -11.482 -12.016 23.713 Atomic orbital electron populations 1.21019 0.84962 1.05610 1.04897 1.22127 0.99052 0.86697 0.87639 1.22386 0.93432 1.01150 1.03393 1.22175 0.95649 0.97065 0.87931 1.20245 0.89753 0.96296 1.16625 1.21065 0.88641 0.81875 0.72690 1.90820 1.72436 1.30077 1.46372 1.86629 1.20166 1.34773 1.83731 1.22557 0.77179 0.97546 1.00490 0.86917 1.22413 1.04764 1.04301 0.90779 1.20606 0.82956 0.87386 0.80332 1.90658 1.61571 1.43190 1.50358 1.48037 1.05030 1.25187 1.54827 1.22257 0.95574 0.89996 0.99640 1.18848 0.92527 0.83689 0.90955 1.21661 1.41497 1.01232 0.94312 0.93149 1.25802 0.94732 0.94570 1.03699 1.70022 1.42281 1.06787 1.37323 0.85516 0.78332 0.78347 0.78918 1.18510 1.20026 1.20607 1.19171 0.86658 0.84579 0.90019 1.84677 1.76556 1.31958 1.35437 1.67314 1.08156 1.31745 1.17771 0.88445 0.89896 0.86980 0.79649 0.82426 0.91101 0.86857 0.89389 0.89388 0.90686 0.89421 0.94718 0.97949 0.92239 0.71539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.16 71.24 0.72 -0.12 16 2 C 0.18 2.94 6.78 42.58 0.29 3.23 16 3 C -0.18 -2.73 9.71 22.32 0.22 -2.52 16 4 C 0.00 -0.07 9.73 22.73 0.22 0.16 16 5 C -0.22 -5.88 5.90 -19.92 -0.12 -6.00 16 6 C 0.51 15.85 7.87 70.23 0.55 16.40 16 7 O -0.51 -16.55 14.45 26.76 0.39 -16.17 16 8 O -0.34 -11.44 8.74 -50.16 -0.44 -11.87 16 9 C 0.08 2.63 2.18 29.85 0.07 2.70 16 10 H 0.11 3.56 6.42 -2.39 -0.02 3.54 16 11 C -0.17 -3.85 9.19 71.98 0.66 -3.19 16 12 C 0.50 21.74 7.15 87.66 0.63 22.36 16 13 O -0.58 -31.12 16.08 15.76 0.25 -30.87 16 14 N -0.60 -25.38 2.86 -851.14 -2.43 -27.81 16 15 C 0.07 1.93 8.80 127.77 1.12 3.05 16 16 C 0.26 13.95 5.16 85.63 0.44 14.39 16 17 C -0.55 -31.78 9.39 25.60 0.24 -31.54 16 18 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 19 C 0.01 0.66 5.46 84.66 0.46 1.13 16 20 N -0.92 -55.56 13.29 21.45 0.28 -55.28 16 21 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 22 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 25 C 0.38 9.45 7.77 85.14 0.66 10.11 16 26 O -0.48 -11.67 11.66 -66.24 -0.77 -12.45 16 27 N -0.53 -11.86 10.28 -296.02 -3.04 -14.91 16 28 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 0.25 8.07 -2.38 -0.02 0.23 16 31 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.16 3.36 7.70 -2.91 -0.02 3.34 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.11 2.15 4.53 -2.39 -0.01 2.14 16 35 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.09 1.94 6.95 -2.39 -0.02 1.92 16 37 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 38 H 0.09 2.05 6.01 -2.39 -0.01 2.04 16 39 H 0.03 1.84 8.07 -2.39 -0.02 1.82 16 40 H 0.00 0.15 7.42 -2.39 -0.02 0.13 16 41 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.42 6.36 9.06 -74.05 -0.67 5.69 16 Total: -1.00 -83.51 362.51 2.84 -80.67 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.40 Total: 11.32 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: 6.17 Total: 30.16 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -5.19 Total: -98.00 kcal Atomic # 8 Polarization: -70.79 SS G_CDS: -0.57 Total: -71.36 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -83.51 2.84 -80.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744551827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.815 kcal (2) G-P(sol) polarization free energy of solvation -83.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds