Wall clock time and date at job start Sat Apr 11 2020 00:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36002 * 116.99878 * 2 1 4 4 C 1.39030 * 119.87927 * 179.97438 * 3 2 1 5 5 C 1.37935 * 120.38978 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.93962 * 180.02562 * 5 4 3 7 7 C 1.38924 * 120.12893 * 0.02562 * 5 4 3 8 8 N 1.39055 * 120.12454 * 180.02562 * 7 5 4 9 9 C 1.40342 * 119.74828 * 359.97438 * 7 5 4 10 10 C 1.47293 * 120.18396 * 179.97438 * 9 7 5 11 11 O 1.21519 * 120.00482 * 5.91665 * 10 9 7 12 12 O 1.34774 * 119.99991 * 185.91536 * 10 9 7 13 13 C 1.45197 * 117.00138 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47145 * 180.02562 * 13 12 10 15 15 O 1.21286 * 119.99727 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00060 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99868 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46715 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00143 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99540 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99804 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47211 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46903 * 120.00202 * 22 20 18 25 25 H 1.48500 * 109.47464 * 240.00114 * 22 20 18 26 26 C 1.38161 * 119.87667 * 359.96997 * 3 2 1 27 27 H 1.09004 * 109.47098 * 60.00968 * 1 2 3 28 28 H 1.09003 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47469 * 300.00470 * 1 2 3 30 30 H 1.08004 * 119.80366 * 0.24450 * 4 3 2 31 31 H 1.08993 * 109.47372 * 89.99556 * 6 5 4 32 32 H 1.08997 * 109.47791 * 210.00419 * 6 5 4 33 33 H 1.09008 * 109.46671 * 329.99905 * 6 5 4 34 34 H 0.96997 * 119.99609 * 24.91850 * 8 7 5 35 35 H 0.96992 * 119.99625 * 204.92640 * 8 7 5 36 36 H 1.09000 * 109.47218 * 300.00097 * 13 12 10 37 37 H 1.08999 * 109.47058 * 60.00669 * 13 12 10 38 38 H 0.97001 * 119.99725 * 0.02562 * 16 14 13 39 39 H 1.09000 * 109.47029 * 299.99907 * 17 16 14 40 40 H 1.08999 * 109.46901 * 60.00268 * 17 16 14 41 41 H 0.97008 * 119.99856 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.06723 * 0.05106 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4350 1.2817 0.0005 5 6 4.0721 2.5051 0.0000 6 6 5.5777 2.5690 0.0000 7 6 3.3285 3.6785 -0.0005 8 7 3.9708 4.9118 -0.0016 9 6 1.9265 3.6145 -0.0011 10 6 1.1287 4.8527 -0.0011 11 8 1.6794 5.9305 -0.1091 12 8 -0.2123 4.7902 0.1187 13 6 -0.9342 6.0500 0.1115 14 6 -2.4105 5.7839 0.2549 15 8 -2.8145 4.6446 0.3540 16 7 -3.2820 6.8118 0.2731 17 6 -4.7172 6.5531 0.4131 18 6 -5.4663 7.8606 0.4055 19 1 -4.9274 8.7912 0.3059 20 6 -6.8399 7.8687 0.5246 21 7 -7.4962 6.7355 0.6454 22 14 -7.7687 9.4895 0.5145 23 1 -6.8062 10.6107 0.3670 24 1 -8.7242 9.5052 -0.6222 25 1 -8.5142 9.6409 1.7898 26 6 1.2914 2.3689 -0.0006 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.0182 0.3726 -0.0030 31 1 5.9407 2.5838 -1.0276 32 1 5.9030 3.4737 0.5135 33 1 5.9784 1.6953 0.5143 34 1 4.8704 4.9897 -0.3559 35 1 3.5194 5.6940 0.3521 36 1 -0.5944 6.6683 0.9424 37 1 -0.7480 6.5700 -0.8282 38 1 -2.9589 7.7230 0.1935 39 1 -5.0574 5.9341 -0.4171 40 1 -4.9027 6.0339 1.3534 41 1 -8.4627 6.7413 0.7289 42 1 0.2129 2.3113 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759743016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:34 Heat of formation + Delta-G solvation = -133.136669 kcal Electronic energy + Delta-G solvation = -26244.098695 eV Core-core repulsion = 22189.690679 eV Total energy + Delta-G solvation = -4054.408016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.99940 -39.93139 -38.79292 -38.11354 -36.33332 -34.28350 -34.04681 -33.02048 -32.43154 -29.80494 -29.02437 -27.19648 -26.95871 -26.56808 -24.28686 -22.58441 -21.34332 -21.02806 -19.96575 -18.27998 -17.73587 -17.32286 -17.20820 -17.03942 -16.56403 -16.06536 -15.79974 -15.46430 -15.36496 -15.08620 -14.65637 -14.30618 -14.19055 -13.95717 -13.64377 -13.19715 -13.05368 -12.96281 -12.46419 -12.40865 -12.32740 -12.05461 -12.01971 -11.79987 -11.56433 -11.50012 -11.01017 -10.96398 -10.72598 -10.52420 -10.36866 -9.95668 -9.44791 -9.21033 -9.15831 -8.81149 -8.01806 -7.52978 -6.22064 -4.29389 0.50728 1.28570 2.39146 2.41198 3.14654 3.17026 3.20714 3.28021 3.30975 3.53871 3.72291 3.94671 4.30528 4.45359 4.54654 4.79777 4.92140 5.00610 5.09299 5.12617 5.14249 5.16223 5.21692 5.25456 5.28623 5.31782 5.45042 5.51231 5.59192 5.83955 5.97768 6.01637 6.25173 6.34585 7.15954 7.19769 7.27389 7.30752 7.43007 7.56653 7.62336 7.72414 7.89367 8.47059 8.68549 8.93393 9.37118 10.88092 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.002337 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.497254 B =11979.018375 C =13251.400960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.320 6.320 3 C 0.065 3.935 4 C -0.068 4.068 5 C -0.138 4.138 6 C -0.105 4.105 7 C 0.249 3.751 8 N -0.862 5.862 9 C -0.166 4.166 10 C 0.519 3.481 11 O -0.519 6.519 12 O -0.324 6.324 13 C 0.050 3.950 14 C 0.500 3.500 15 O -0.535 6.535 16 N -0.706 5.706 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.110 4.110 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.396 0.604 35 H 0.412 0.588 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.393 0.607 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.266 0.734 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.196 -8.479 -1.616 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.234 6.234 3 C 0.019 3.981 4 C -0.087 4.087 5 C -0.143 4.143 6 C -0.162 4.162 7 C 0.141 3.859 8 N -0.409 5.409 9 C -0.173 4.173 10 C 0.366 3.634 11 O -0.411 6.411 12 O -0.238 6.238 13 C -0.028 4.028 14 C 0.283 3.717 15 O -0.412 6.412 16 N -0.356 5.356 17 C 0.131 3.869 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.130 4.130 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.226 0.774 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 24.828 -9.238 -1.535 26.535 hybrid contribution -0.676 1.922 -0.069 2.039 sum 24.151 -7.316 -1.603 25.286 Atomic orbital electron populations 1.23100 0.77905 1.03989 1.02062 1.86042 1.21594 1.26115 1.89682 1.18591 0.91977 0.84373 1.03129 1.20302 0.91290 0.97686 0.99424 1.19222 0.96098 0.90624 1.08342 1.20623 0.90112 1.03114 1.02332 1.17338 0.88972 0.86869 0.92749 1.42834 1.19662 1.08353 1.70017 1.18353 0.90769 0.90942 1.17229 1.20981 0.81035 0.88972 0.72433 1.90624 1.71826 1.30796 1.47805 1.86614 1.19249 1.34962 1.83010 1.22874 0.91099 0.84280 1.04545 1.19879 0.86565 0.86417 0.78851 1.90699 1.79451 1.21524 1.49559 1.46366 1.09605 1.07912 1.71750 1.19184 0.72578 0.97360 0.97797 1.21241 0.92104 0.92183 1.52770 0.91712 1.24957 0.97446 0.97013 0.94614 1.69981 1.08392 1.25583 1.48210 0.86335 0.79734 0.82891 0.77796 1.19607 1.20758 1.20753 1.21456 1.01155 0.90507 0.99840 0.92365 0.88211 0.92236 0.84625 0.91224 0.91486 0.91003 0.77524 0.75153 0.88468 0.88452 0.77411 0.95247 0.95248 0.92414 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.59 10.50 -19.75 -0.21 -3.80 16 3 C 0.07 0.75 6.68 -39.32 -0.26 0.48 16 4 C -0.07 -0.65 9.61 -39.40 -0.38 -1.03 16 5 C -0.14 -1.25 5.89 -104.48 -0.62 -1.87 16 6 C -0.11 -0.61 9.44 36.00 0.34 -0.27 16 7 C 0.25 2.71 6.74 -83.54 -0.56 2.15 16 8 N -0.86 -7.90 8.09 32.57 0.26 -7.64 16 9 C -0.17 -2.17 5.89 -104.83 -0.62 -2.78 16 10 C 0.52 7.58 7.86 34.41 0.27 7.85 16 11 O -0.52 -7.63 13.60 -19.28 -0.26 -7.89 16 12 O -0.32 -5.25 9.02 -47.38 -0.43 -5.68 16 13 C 0.05 0.76 5.95 36.01 0.21 0.97 16 14 C 0.50 9.93 7.91 -10.98 -0.09 9.85 16 15 O -0.53 -12.86 16.50 -14.11 -0.23 -13.09 16 16 N -0.71 -14.47 5.55 -61.47 -0.34 -14.81 16 17 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 18 C -0.54 -14.50 9.28 -34.44 -0.32 -14.82 16 19 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.88 -25.68 13.29 55.43 0.74 -24.95 16 22 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C -0.11 -1.38 8.60 -39.02 -0.34 -1.72 16 27 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 30 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.34 6.98 -51.93 -0.36 -0.02 16 33 H 0.07 0.34 8.08 -51.92 -0.42 -0.08 16 34 H 0.40 2.55 7.52 -40.82 -0.31 2.24 16 35 H 0.41 4.28 6.13 -40.82 -0.25 4.03 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.15 1.91 5.83 -52.49 -0.31 1.61 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -33.44 362.92 -6.78 -40.23 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.27 Total: 8.43 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -1.49 Total: 8.16 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.66 Total: -47.40 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.13 Total: -30.46 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.44 -6.78 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759743016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.910 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds