Wall clock time and date at job start Sat Apr 11 2020 00:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36002 * 116.99878 * 2 1 4 4 C 1.39030 * 119.87927 * 179.97438 * 3 2 1 5 5 C 1.37935 * 120.38978 * 179.97438 * 4 3 2 6 6 C 1.50695 * 119.93962 * 180.02562 * 5 4 3 7 7 C 1.38924 * 120.12893 * 0.02562 * 5 4 3 8 8 N 1.39055 * 120.12454 * 180.02562 * 7 5 4 9 9 C 1.40342 * 119.74828 * 359.97438 * 7 5 4 10 10 C 1.47293 * 120.18396 * 179.97438 * 9 7 5 11 11 O 1.21519 * 120.00482 * 5.91665 * 10 9 7 12 12 O 1.34774 * 119.99991 * 185.91536 * 10 9 7 13 13 C 1.45197 * 117.00138 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47145 * 180.02562 * 13 12 10 15 15 O 1.21286 * 119.99727 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00060 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99868 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.46715 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00143 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99540 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00155 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99804 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47211 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46903 * 120.00202 * 22 20 18 25 25 H 1.48500 * 109.47464 * 240.00114 * 22 20 18 26 26 C 1.38161 * 119.87667 * 359.96997 * 3 2 1 27 27 H 1.09004 * 109.47098 * 60.00968 * 1 2 3 28 28 H 1.09003 * 109.47199 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47469 * 300.00470 * 1 2 3 30 30 H 1.08004 * 119.80366 * 0.24450 * 4 3 2 31 31 H 1.08993 * 109.47372 * 89.99556 * 6 5 4 32 32 H 1.08997 * 109.47791 * 210.00419 * 6 5 4 33 33 H 1.09008 * 109.46671 * 329.99905 * 6 5 4 34 34 H 0.96997 * 119.99609 * 24.91850 * 8 7 5 35 35 H 0.96992 * 119.99625 * 204.92640 * 8 7 5 36 36 H 1.09000 * 109.47218 * 300.00097 * 13 12 10 37 37 H 1.08999 * 109.47058 * 60.00669 * 13 12 10 38 38 H 0.97001 * 119.99725 * 0.02562 * 16 14 13 39 39 H 1.09000 * 109.47029 * 299.99907 * 17 16 14 40 40 H 1.08999 * 109.46901 * 60.00268 * 17 16 14 41 41 H 0.97008 * 119.99856 * 180.02562 * 21 20 18 42 42 H 1.08002 * 120.06723 * 0.05106 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 3.4350 1.2817 0.0005 5 6 4.0721 2.5051 0.0000 6 6 5.5777 2.5690 0.0000 7 6 3.3285 3.6785 -0.0005 8 7 3.9708 4.9118 -0.0016 9 6 1.9265 3.6145 -0.0011 10 6 1.1287 4.8527 -0.0011 11 8 1.6794 5.9305 -0.1091 12 8 -0.2123 4.7902 0.1187 13 6 -0.9342 6.0500 0.1115 14 6 -2.4105 5.7839 0.2549 15 8 -2.8145 4.6446 0.3540 16 7 -3.2820 6.8118 0.2731 17 6 -4.7172 6.5531 0.4131 18 6 -5.4663 7.8606 0.4055 19 1 -4.9274 8.7912 0.3059 20 6 -6.8399 7.8687 0.5246 21 7 -7.4962 6.7355 0.6454 22 14 -7.7687 9.4895 0.5145 23 1 -6.8062 10.6107 0.3670 24 1 -8.7242 9.5052 -0.6222 25 1 -8.5142 9.6409 1.7898 26 6 1.2914 2.3689 -0.0006 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.0182 0.3726 -0.0030 31 1 5.9407 2.5838 -1.0276 32 1 5.9030 3.4737 0.5135 33 1 5.9784 1.6953 0.5143 34 1 4.8704 4.9897 -0.3559 35 1 3.5194 5.6940 0.3521 36 1 -0.5944 6.6683 0.9424 37 1 -0.7480 6.5700 -0.8282 38 1 -2.9589 7.7230 0.1935 39 1 -5.0574 5.9341 -0.4171 40 1 -4.9027 6.0339 1.3534 41 1 -8.4627 6.7413 0.7289 42 1 0.2129 2.3113 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759743016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:33 Heat of formation + Delta-G solvation = -156.720969 kcal Electronic energy + Delta-G solvation = -26245.121387 eV Core-core repulsion = 22189.690679 eV Total energy + Delta-G solvation = -4055.430708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.01801 -40.98955 -40.29901 -39.03239 -37.49748 -36.20507 -34.86330 -34.43651 -33.79031 -30.98041 -30.19547 -28.60067 -27.91672 -27.48398 -25.37300 -24.44268 -22.17912 -22.04793 -21.66897 -19.43584 -18.96823 -18.54085 -18.20542 -17.92956 -17.70925 -17.65874 -16.99809 -16.74632 -16.64702 -16.28586 -16.10272 -15.92637 -14.95944 -14.83052 -14.64467 -14.45488 -14.36771 -14.08013 -13.92592 -13.69240 -13.59163 -13.09438 -12.92779 -12.88176 -12.76885 -12.73057 -12.39558 -12.35480 -12.23780 -11.94768 -11.53812 -11.48209 -10.94492 -10.84528 -10.77473 -9.95861 -9.94139 -8.33841 -8.31092 -6.47573 -0.39390 0.46052 1.20588 1.38380 1.43874 1.44066 1.52723 1.57870 2.32430 2.38843 2.54959 2.67437 2.96183 3.04292 3.49305 3.66805 3.74233 3.99255 4.02930 4.05358 4.15001 4.32914 4.37952 4.38453 4.60029 4.67447 4.74175 4.88994 4.94786 5.04454 5.08563 5.17847 5.20030 5.26615 5.32957 5.39967 5.58415 5.61360 5.80508 6.35143 6.44004 6.60143 6.62183 6.76042 6.95396 7.18613 7.33385 8.81223 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.002337 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.497254 B =11979.018375 C =13251.400960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.327 6.327 3 C 0.054 3.946 4 C -0.063 4.063 5 C -0.129 4.129 6 C -0.105 4.105 7 C 0.248 3.752 8 N -0.852 5.852 9 C -0.193 4.193 10 C 0.517 3.483 11 O -0.524 6.524 12 O -0.345 6.345 13 C 0.061 3.939 14 C 0.500 3.500 15 O -0.583 6.583 16 N -0.698 5.698 17 C 0.266 3.734 18 C -0.556 4.556 19 H 0.086 0.914 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.985 3.015 23 H -0.253 1.253 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.127 4.127 27 H 0.052 0.948 28 H 0.124 0.876 29 H 0.051 0.949 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.410 0.590 35 H 0.407 0.593 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.413 0.587 39 H -0.008 1.008 40 H -0.008 1.008 41 H 0.269 0.731 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.886 -7.068 -1.872 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.241 6.241 3 C 0.008 3.992 4 C -0.082 4.082 5 C -0.134 4.134 6 C -0.161 4.161 7 C 0.138 3.862 8 N -0.399 5.399 9 C -0.200 4.200 10 C 0.365 3.635 11 O -0.416 6.416 12 O -0.260 6.260 13 C -0.016 4.016 14 C 0.285 3.715 15 O -0.463 6.463 16 N -0.349 5.349 17 C 0.144 3.856 18 C -0.593 4.593 19 H 0.104 0.896 20 C -0.196 4.196 21 N -0.568 5.568 22 Si 0.809 3.191 23 H -0.176 1.176 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.147 4.147 27 H 0.071 0.929 28 H 0.142 0.858 29 H 0.069 0.931 30 H 0.179 0.821 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.242 0.758 35 H 0.243 0.757 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.249 0.751 39 H 0.010 0.990 40 H 0.010 0.990 41 H 0.078 0.922 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 27.594 -7.785 -1.804 28.728 hybrid contribution -1.403 1.388 0.013 1.973 sum 26.191 -6.398 -1.790 27.021 Atomic orbital electron populations 1.23211 0.77307 1.05336 1.01434 1.86023 1.22273 1.26127 1.89710 1.18829 0.92881 0.84001 1.03470 1.20668 0.90567 0.99008 0.97963 1.19624 0.97895 0.89584 1.06254 1.20741 0.87285 1.04399 1.03699 1.17526 0.88344 0.88104 0.92216 1.42811 1.20205 1.07585 1.69334 1.18429 0.91676 0.90255 1.19634 1.21259 0.80296 0.89655 0.72248 1.90606 1.71609 1.30942 1.48397 1.86611 1.20460 1.35423 1.83545 1.22761 0.87250 0.84505 1.07057 1.20666 0.88573 0.85274 0.76958 1.90678 1.80735 1.23524 1.51385 1.46035 1.07711 1.09358 1.71836 1.18638 0.75771 0.96757 0.94426 1.21632 0.92633 0.92768 1.52309 0.89585 1.26059 0.98654 1.01028 0.93869 1.70137 1.08888 1.28456 1.49344 0.85100 0.78219 0.78162 0.77665 1.17628 1.20509 1.20491 1.21341 1.00569 0.91218 1.01572 0.92909 0.85824 0.93057 0.82082 0.89659 0.90577 0.89403 0.75824 0.75689 0.85643 0.85781 0.75096 0.98958 0.98956 0.92197 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.33 -7.32 10.50 -93.58 -0.98 -8.30 16 3 C 0.05 1.23 6.68 22.44 0.15 1.38 16 4 C -0.06 -1.08 9.61 22.39 0.22 -0.87 16 5 C -0.13 -2.03 5.89 -19.77 -0.12 -2.15 16 6 C -0.10 -0.82 9.44 71.23 0.67 -0.15 16 7 C 0.25 5.04 6.74 38.67 0.26 5.30 16 8 N -0.85 -13.95 8.09 -50.86 -0.41 -14.36 16 9 C -0.19 -5.04 5.89 -20.00 -0.12 -5.16 16 10 C 0.52 15.07 7.86 70.20 0.55 15.62 16 11 O -0.52 -14.80 13.60 19.77 0.27 -14.53 16 12 O -0.35 -11.37 9.02 -50.47 -0.46 -11.83 16 13 C 0.06 1.81 5.95 71.24 0.42 2.24 16 14 C 0.50 20.27 7.91 87.66 0.69 20.96 16 15 O -0.58 -29.48 16.50 15.75 0.26 -29.22 16 16 N -0.70 -28.93 5.55 -466.77 -2.59 -31.52 16 17 C 0.27 14.40 5.43 85.63 0.46 14.87 16 18 C -0.56 -29.70 9.28 25.60 0.24 -29.46 16 19 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 20 C 0.00 0.20 5.46 84.66 0.46 0.66 16 21 N -0.93 -55.50 13.29 21.45 0.28 -55.21 16 22 Si 0.99 41.86 29.54 68.60 2.03 43.89 16 23 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 24 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.13 -3.33 8.60 22.63 0.19 -3.14 16 27 H 0.05 1.07 7.65 -2.38 -0.02 1.05 16 28 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.05 1.06 7.65 -2.39 -0.02 1.05 16 30 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.49 6.98 -2.39 -0.02 0.47 16 33 H 0.09 0.47 8.08 -2.38 -0.02 0.45 16 34 H 0.41 4.18 7.52 -92.71 -0.70 3.49 16 35 H 0.41 7.80 6.13 -92.71 -0.57 7.23 16 36 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.41 13.73 8.32 -92.71 -0.77 12.96 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 42 H 0.13 3.73 5.83 -2.91 -0.02 3.72 16 Total: -1.00 -75.41 362.92 2.67 -72.74 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.94 Total: 26.70 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 5.20 Total: 21.64 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -2.72 Total: -101.10 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -0.91 Total: -63.89 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -75.41 2.67 -72.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759743016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.976 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds