Wall clock time and date at job start Sat Apr 11 2020 00:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99950 * 2 1 4 4 C 1.52996 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47537 * 180.02562 * 4 3 2 6 6 O 1.20761 * 119.99425 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00013 * 180.02562 * 5 4 3 8 8 O 1.45203 * 109.46918 * 179.97438 * 7 5 4 9 9 C 1.34225 * 117.00065 * 179.97438 * 8 7 5 10 10 O 1.20830 * 120.00117 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00089 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09005 * 109.47195 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47774 * 299.99937 * 1 2 3 29 29 H 1.09003 * 109.47339 * 60.00444 * 1 2 3 30 30 H 1.08999 * 109.47094 * 59.99902 * 3 2 1 31 31 H 1.08999 * 109.47116 * 299.99674 * 3 2 1 32 32 H 1.08999 * 109.46843 * 60.00083 * 4 3 2 33 33 H 1.09001 * 109.47541 * 300.00616 * 4 3 2 34 34 H 1.09005 * 109.47236 * 60.00331 * 7 5 4 35 35 H 1.08992 * 109.47428 * 299.99735 * 7 5 4 36 36 H 1.08998 * 109.46621 * 60.00590 * 11 9 8 37 37 H 1.08996 * 109.47266 * 300.00254 * 11 9 8 38 38 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 39 39 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 42 42 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 8 3.4385 3.5384 0.0017 7 6 5.6471 2.7189 0.0014 8 8 5.9853 4.1310 0.0014 9 6 7.2903 4.4450 0.0021 10 8 8.1225 3.5690 0.0021 11 6 7.7176 5.8902 0.0027 12 6 9.2225 5.9691 0.0027 13 6 9.9116 6.0058 -1.1958 14 6 11.2907 6.0786 -1.1992 15 6 11.9856 6.1144 0.0028 16 8 13.3412 6.1864 0.0027 17 6 13.9462 6.3358 -1.1929 18 1 13.3618 6.3108 -2.1007 19 6 15.3188 6.5215 -1.2569 20 7 16.0307 6.5525 -0.1510 21 14 16.1569 6.7292 -2.9133 22 1 16.1953 8.1698 -3.2716 23 1 17.5428 6.2012 -2.8365 24 1 15.3991 5.9817 -3.9488 25 6 11.2912 6.0710 1.2047 26 6 9.9117 6.0040 1.2013 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8573 0.6436 -0.8891 33 1 3.8567 0.6439 0.8908 34 1 6.0622 2.2463 -0.8888 35 1 6.0621 2.2456 0.8911 36 1 7.3276 6.3839 0.8928 37 1 7.3282 6.3846 -0.8872 38 1 9.3707 5.9783 -2.1301 39 1 11.8282 6.1076 -2.1354 40 1 16.9910 6.6820 -0.1958 41 1 11.8290 6.0942 2.1409 42 1 9.3708 5.9747 2.1356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761949986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:39 Heat of formation + Delta-G solvation = -169.974169 kcal Electronic energy + Delta-G solvation = -25169.121066 eV Core-core repulsion = 21080.822904 eV Total energy + Delta-G solvation = -4088.298161 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77986 -39.82620 -38.96484 -38.18956 -36.90813 -36.10416 -32.69010 -32.52884 -31.59292 -30.19819 -29.51390 -27.16096 -26.61961 -25.19852 -23.88933 -22.02076 -21.69021 -20.30414 -20.08887 -18.02090 -17.75886 -17.42755 -17.16430 -16.96771 -16.54972 -16.50401 -15.54372 -15.30444 -15.24337 -14.73234 -14.62825 -14.43634 -14.25918 -13.80784 -13.58728 -13.50961 -13.08044 -12.74848 -12.68175 -12.52417 -12.41367 -11.99312 -11.91672 -11.70485 -11.57038 -11.30604 -10.93963 -10.92703 -10.83139 -10.65651 -10.49730 -10.44216 -10.20236 -10.10301 -9.35940 -8.84919 -8.19483 -7.22616 -6.46961 -4.05558 1.39816 1.98264 2.21486 2.27870 2.48093 3.10858 3.12877 3.17274 3.17950 3.81973 3.95419 4.24608 4.43213 4.51163 4.70205 4.74230 4.79300 4.86697 4.87127 4.93267 5.00037 5.08568 5.18884 5.19654 5.24185 5.25393 5.25679 5.29515 5.61957 5.69296 5.80854 6.18070 6.26756 6.38120 6.57869 6.66709 6.87523 6.94243 7.02320 7.19723 7.31777 7.41681 7.77992 7.81018 7.98057 8.98530 9.68004 10.70879 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.001728 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.494947 B =16197.352953 C =16494.303015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.069 3.931 4 C -0.165 4.165 5 C 0.361 3.639 6 O -0.429 6.429 7 C 0.015 3.985 8 O -0.348 6.348 9 C 0.455 3.545 10 O -0.489 6.489 11 C -0.048 4.048 12 C -0.185 4.185 13 C -0.052 4.052 14 C -0.233 4.233 15 C 0.160 3.840 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.192 4.192 26 C -0.056 4.056 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.118 0.882 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.280 -8.732 -0.301 27.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.008 4.008 4 C -0.202 4.202 5 C 0.234 3.766 6 O -0.300 6.300 7 C -0.060 4.060 8 O -0.265 6.265 9 C 0.298 3.702 10 O -0.374 6.374 11 C -0.086 4.086 12 C -0.186 4.186 13 C -0.071 4.071 14 C -0.253 4.253 15 C 0.105 3.895 16 O -0.079 6.079 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.211 4.211 26 C -0.074 4.074 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.136 0.864 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -25.874 -8.646 -0.055 27.281 hybrid contribution 0.366 -0.018 -0.883 0.956 sum -25.508 -8.664 -0.938 26.956 Atomic orbital electron populations 1.22762 0.80390 1.02948 1.00297 1.87818 1.20246 1.27652 1.95565 1.22236 0.92098 0.84703 1.01761 1.21869 0.95508 0.96100 1.06723 1.24310 0.89871 0.90640 0.71761 1.90458 1.63965 1.41837 1.33778 1.23299 0.94974 0.82171 1.05545 1.86614 1.28608 1.26405 1.84892 1.24391 0.79471 0.93852 0.72527 1.90717 1.52513 1.50316 1.43879 1.20098 0.94695 0.88218 1.05555 1.18632 0.91608 1.14380 0.94018 1.20534 0.93724 0.96686 0.96132 1.21111 0.94056 1.11617 0.98483 1.19412 0.84840 0.91917 0.93294 1.83976 1.13077 1.77721 1.33077 1.21349 0.90968 1.51437 0.83107 0.88989 1.25302 0.95422 0.96428 0.99326 1.70037 1.07185 1.45314 1.27036 0.85701 0.78700 0.78866 0.80104 1.19837 1.20233 1.19180 1.20160 0.93266 1.11403 0.96296 1.20427 0.93205 0.97509 0.96284 0.89375 0.93842 0.93852 0.92360 0.92358 0.86906 0.86904 0.87619 0.87602 0.87593 0.87640 0.87610 0.85432 0.91971 0.86377 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.05 10.70 -35.23 -0.38 -3.43 16 3 C 0.07 0.48 5.23 37.16 0.19 0.67 16 4 C -0.16 -0.93 6.01 -27.88 -0.17 -1.09 16 5 C 0.36 2.97 7.24 -29.03 -0.21 2.76 16 6 O -0.43 -5.02 16.13 -13.71 -0.22 -5.24 16 7 C 0.01 0.13 5.88 36.00 0.21 0.35 16 8 O -0.35 -4.27 9.75 -45.90 -0.45 -4.72 16 9 C 0.46 6.35 7.95 36.01 0.29 6.64 16 10 O -0.49 -8.40 15.78 -18.75 -0.30 -8.70 16 11 C -0.05 -0.62 5.94 -29.04 -0.17 -0.79 16 12 C -0.19 -3.15 4.38 -104.58 -0.46 -3.61 16 13 C -0.05 -0.97 9.69 -39.61 -0.38 -1.35 16 14 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 15 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 16 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 17 C -0.39 -10.99 9.49 30.89 0.29 -10.70 16 18 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 21 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 26 C -0.06 -1.01 9.69 -39.61 -0.38 -1.39 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.11 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.11 0.81 8.13 -51.93 -0.42 0.39 16 36 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 37 H 0.11 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -35.11 373.14 -6.38 -41.49 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.61 Total: 1.60 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.79 Total: -12.58 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.76 Total: -24.46 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.34 Total: -27.13 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.11 -6.38 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761949986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.483 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds