Wall clock time and date at job start Sat Apr 11 2020 00:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99950 * 2 1 4 4 C 1.52996 * 109.47323 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47537 * 180.02562 * 4 3 2 6 6 O 1.20761 * 119.99425 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00013 * 180.02562 * 5 4 3 8 8 O 1.45203 * 109.46918 * 179.97438 * 7 5 4 9 9 C 1.34225 * 117.00065 * 179.97438 * 8 7 5 10 10 O 1.20830 * 120.00117 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00089 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09005 * 109.47195 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47774 * 299.99937 * 1 2 3 29 29 H 1.09003 * 109.47339 * 60.00444 * 1 2 3 30 30 H 1.08999 * 109.47094 * 59.99902 * 3 2 1 31 31 H 1.08999 * 109.47116 * 299.99674 * 3 2 1 32 32 H 1.08999 * 109.46843 * 60.00083 * 4 3 2 33 33 H 1.09001 * 109.47541 * 300.00616 * 4 3 2 34 34 H 1.09005 * 109.47236 * 60.00331 * 7 5 4 35 35 H 1.08992 * 109.47428 * 299.99735 * 7 5 4 36 36 H 1.08998 * 109.46621 * 60.00590 * 11 9 8 37 37 H 1.08996 * 109.47266 * 300.00254 * 11 9 8 38 38 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 39 39 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 41 41 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 42 42 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 8 3.4385 3.5384 0.0017 7 6 5.6471 2.7189 0.0014 8 8 5.9853 4.1310 0.0014 9 6 7.2903 4.4450 0.0021 10 8 8.1225 3.5690 0.0021 11 6 7.7176 5.8902 0.0027 12 6 9.2225 5.9691 0.0027 13 6 9.9116 6.0058 -1.1958 14 6 11.2907 6.0786 -1.1992 15 6 11.9856 6.1144 0.0028 16 8 13.3412 6.1864 0.0027 17 6 13.9462 6.3358 -1.1929 18 1 13.3618 6.3108 -2.1007 19 6 15.3188 6.5215 -1.2569 20 7 16.0307 6.5525 -0.1510 21 14 16.1569 6.7292 -2.9133 22 1 16.1953 8.1698 -3.2716 23 1 17.5428 6.2012 -2.8365 24 1 15.3991 5.9817 -3.9488 25 6 11.2912 6.0710 1.2047 26 6 9.9117 6.0040 1.2013 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8573 0.6436 -0.8891 33 1 3.8567 0.6439 0.8908 34 1 6.0622 2.2463 -0.8888 35 1 6.0621 2.2456 0.8911 36 1 7.3276 6.3839 0.8928 37 1 7.3282 6.3846 -0.8872 38 1 9.3707 5.9783 -2.1301 39 1 11.8282 6.1076 -2.1354 40 1 16.9910 6.6820 -0.1958 41 1 11.8290 6.0942 2.1409 42 1 9.3708 5.9747 2.1356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761949986.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:38 Heat of formation + Delta-G solvation = -192.035897 kcal Electronic energy + Delta-G solvation = -25170.077734 eV Core-core repulsion = 21080.822904 eV Total energy + Delta-G solvation = -4089.254830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76575 -40.83778 -40.45386 -38.74709 -38.43639 -37.29996 -34.42188 -33.27811 -33.00398 -31.80400 -30.31707 -28.34943 -27.41677 -26.97869 -24.52463 -23.65973 -22.96784 -21.53806 -20.83334 -19.86027 -18.87022 -18.75266 -18.07846 -17.91758 -17.33706 -17.19899 -16.45366 -16.42336 -16.16398 -15.95704 -15.88731 -15.83186 -15.50978 -15.16374 -15.02679 -14.55705 -14.38822 -14.12471 -13.76074 -13.61985 -13.57656 -12.97962 -12.87936 -12.82963 -12.50711 -12.43039 -12.35142 -12.30418 -12.16538 -12.11727 -11.84319 -11.61751 -11.19339 -10.86614 -10.78150 -10.69747 -9.78535 -8.95818 -8.47668 -6.16035 0.56304 0.60029 0.76182 1.21974 1.35102 1.41910 1.52102 1.52790 2.17716 2.50771 2.84193 3.15449 3.25420 3.50045 3.71093 3.76058 3.97033 4.01910 4.02262 4.11831 4.17564 4.22166 4.27451 4.42492 4.49046 4.50898 4.51591 4.57229 4.68153 4.78505 4.80139 4.82855 4.85505 5.04152 5.13817 5.26031 5.32612 5.54024 5.70223 5.72742 6.02163 6.10708 6.19976 6.31364 6.76632 6.96860 7.77056 8.75508 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.001728 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.494947 B =16197.352953 C =16494.303015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.066 3.934 4 C -0.157 4.157 5 C 0.375 3.625 6 O -0.468 6.468 7 C 0.005 3.995 8 O -0.351 6.351 9 C 0.465 3.535 10 O -0.529 6.529 11 C -0.050 4.050 12 C -0.159 4.159 13 C -0.054 4.054 14 C -0.245 4.245 15 C 0.117 3.883 16 O -0.232 6.232 17 C -0.415 4.415 18 H 0.102 0.898 19 C -0.022 4.022 20 N -0.920 5.920 21 Si 1.020 2.980 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.206 4.206 26 C -0.052 4.052 27 H 0.101 0.899 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.273 0.727 41 H 0.114 0.886 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.498 -9.291 -1.335 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.010 4.010 4 C -0.194 4.194 5 C 0.250 3.750 6 O -0.342 6.342 7 C -0.069 4.069 8 O -0.268 6.268 9 C 0.309 3.691 10 O -0.417 6.417 11 C -0.086 4.086 12 C -0.160 4.160 13 C -0.072 4.072 14 C -0.264 4.264 15 C 0.066 3.934 16 O -0.139 6.139 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.220 4.220 20 N -0.558 5.558 21 Si 0.839 3.161 22 H -0.187 1.187 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.226 4.226 26 C -0.070 4.070 27 H 0.119 0.881 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.132 0.868 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -29.180 -9.215 -1.085 30.620 hybrid contribution 0.901 0.072 -0.456 1.012 sum -28.279 -9.143 -1.541 29.760 Atomic orbital electron populations 1.22943 0.79280 1.04031 1.00843 1.87784 1.21593 1.27946 1.95641 1.22249 0.92980 0.84485 1.01311 1.21862 0.94445 0.94573 1.08525 1.24544 0.89270 0.91158 0.70012 1.90460 1.64564 1.43183 1.35986 1.23663 0.95618 0.80573 1.07059 1.86580 1.27392 1.28502 1.84325 1.24349 0.79622 0.93706 0.71416 1.90729 1.53527 1.51477 1.45980 1.20218 0.91163 0.88369 1.08878 1.19167 0.94383 1.09537 0.92906 1.20956 0.92331 0.95429 0.98525 1.21234 0.95780 1.12052 0.97316 1.19981 0.84071 0.93915 0.95425 1.83939 1.15293 1.80987 1.33639 1.21840 0.91794 1.51896 0.83616 0.88086 1.26603 0.95784 0.95799 1.03782 1.70183 1.07554 1.48193 1.29865 0.84578 0.77407 0.79365 0.74794 1.18659 1.19570 1.17734 1.20443 0.94998 1.11755 0.95359 1.20901 0.91770 0.95674 0.98663 0.88099 0.93309 0.93330 0.92880 0.92895 0.84999 0.84972 0.86183 0.86101 0.84234 0.84488 0.84073 0.86279 0.91811 0.86768 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -5.64 10.70 -148.98 -1.59 -7.23 16 3 C 0.07 0.81 5.23 71.98 0.38 1.19 16 4 C -0.16 -1.34 6.01 29.85 0.18 -1.16 16 5 C 0.37 5.22 7.24 29.10 0.21 5.43 16 6 O -0.47 -10.10 16.13 17.39 0.28 -9.81 16 7 C 0.00 0.07 5.88 71.23 0.42 0.49 16 8 O -0.35 -7.37 9.75 -45.00 -0.44 -7.81 16 9 C 0.46 11.14 7.95 71.24 0.57 11.70 16 10 O -0.53 -16.61 15.78 21.95 0.35 -16.26 16 11 C -0.05 -1.01 5.94 29.10 0.17 -0.84 16 12 C -0.16 -4.85 4.38 -19.84 -0.09 -4.94 16 13 C -0.05 -1.88 9.69 22.25 0.22 -1.67 16 14 C -0.24 -10.85 9.17 22.39 0.21 -10.64 16 15 C 0.12 5.93 6.65 22.58 0.15 6.08 16 16 O -0.23 -14.24 9.76 -22.72 -0.22 -14.46 16 17 C -0.42 -24.54 9.49 67.92 0.64 -23.89 16 18 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 19 C -0.02 -1.27 5.49 84.84 0.47 -0.80 16 20 N -0.92 -56.94 13.67 21.62 0.30 -56.64 16 21 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 25 C -0.21 -8.95 9.99 22.39 0.22 -8.73 16 26 C -0.05 -1.75 9.69 22.25 0.22 -1.54 16 27 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 31 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 32 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 1.48 8.13 -2.38 -0.02 1.46 16 35 H 0.12 1.47 8.13 -2.39 -0.02 1.45 16 36 H 0.14 2.05 8.08 -2.39 -0.02 2.04 16 37 H 0.14 2.08 8.08 -2.39 -0.02 2.06 16 38 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 40 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 41 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -82.33 373.14 6.94 -75.39 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 1.03 Total: 19.50 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 5.21 Total: -27.84 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.30 Total: -56.64 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -1.63 Total: -55.58 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -82.33 6.94 -75.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761949986.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.647 kcal (2) G-P(sol) polarization free energy of solvation -82.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds