Wall clock time and date at job start Sat Apr 11 2020 00:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34225 * 117.00481 * 2 1 4 4 O 1.20829 * 119.99741 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00490 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47296 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46992 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.46884 * 180.02562 * 7 6 5 9 9 O 1.20821 * 120.00185 * 359.97438 * 8 7 6 10 10 O 1.34231 * 120.00087 * 180.02562 * 8 7 6 11 11 C 1.45196 * 117.00047 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.38294 * 119.93130 * 269.73094 * 12 11 10 14 14 C 1.38099 * 120.07055 * 179.72623 * 13 12 11 15 15 C 1.38885 * 119.92916 * 0.56465 * 14 13 12 16 16 O 1.35746 * 120.07221 * 179.68553 * 15 14 13 17 17 C 1.34828 * 117.00240 * 174.48968 * 16 15 14 18 18 H 1.08006 * 120.00054 * 5.05118 * 17 16 15 19 19 C 1.38655 * 120.00332 * 185.05591 * 17 16 15 20 20 N 1.31553 * 119.99844 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00136 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47289 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47041 * 119.99838 * 21 19 17 24 24 H 1.48501 * 109.47247 * 240.00056 * 21 19 17 25 25 C 1.38888 * 119.85809 * 359.70827 * 15 14 13 26 26 C 1.38097 * 119.93011 * 359.97438 * 25 15 14 27 27 H 1.08994 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47127 * 300.00785 * 1 2 3 29 29 H 1.09003 * 109.47260 * 60.00081 * 1 2 3 30 30 H 1.09001 * 109.47125 * 59.99651 * 5 3 2 31 31 H 1.09000 * 109.47515 * 299.99707 * 5 3 2 32 32 H 1.09001 * 109.46840 * 60.00063 * 6 5 3 33 33 H 1.08996 * 109.47183 * 300.00076 * 6 5 3 34 34 H 1.09001 * 109.47150 * 60.00408 * 7 6 5 35 35 H 1.08996 * 109.47345 * 300.00132 * 7 6 5 36 36 H 1.08996 * 109.47566 * 299.99750 * 11 10 8 37 37 H 1.09002 * 109.47418 * 60.00155 * 11 10 8 38 38 H 1.08001 * 119.96614 * 359.97036 * 13 12 11 39 39 H 1.08000 * 120.04137 * 180.26759 * 14 13 12 40 40 H 0.97003 * 120.00423 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.03290 * 179.97438 * 25 15 14 42 42 H 1.07997 * 119.96090 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 6 5.5281 2.8220 0.0011 8 6 5.9554 4.2671 0.0009 9 8 5.1233 5.1431 -0.0005 10 8 7.2605 4.5811 0.0014 11 6 7.5987 5.9931 0.0007 12 6 9.0975 6.1507 0.0019 13 6 9.7821 6.2293 1.2010 14 6 11.1561 6.3679 1.2056 15 6 11.8492 6.4402 0.0042 16 8 13.1992 6.5830 0.0054 17 6 13.8211 6.5317 -1.1898 18 1 13.2407 6.4648 -2.0982 19 6 15.2058 6.5650 -1.2528 20 7 15.9128 6.6470 -0.1464 21 14 16.0675 6.4933 -2.9086 22 1 15.0542 6.4039 -3.9905 23 1 16.8845 7.7193 -3.0949 24 1 16.9489 5.2990 -2.9567 25 6 11.1582 6.3667 -1.1983 26 6 9.7849 6.2214 -1.1960 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.9564 0.7804 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 3.6100 3.2366 0.8893 33 1 3.6108 3.2355 -0.8906 34 1 5.9186 2.3272 -0.8883 35 1 5.9171 2.3285 0.8917 36 1 7.1842 6.4657 -0.8898 37 1 7.1832 6.4668 0.8901 38 1 9.2420 6.1782 2.1349 39 1 11.6906 6.4249 2.1423 40 1 16.8816 6.6698 -0.1903 41 1 11.6944 6.4230 -2.1341 42 1 9.2471 6.1637 -2.1308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764594912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:42 Heat of formation + Delta-G solvation = -186.789933 kcal Electronic energy + Delta-G solvation = -24971.387103 eV Core-core repulsion = 20882.359755 eV Total energy + Delta-G solvation = -4089.027348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90366 -40.41028 -39.09424 -37.25393 -36.94810 -36.08785 -34.79842 -32.45507 -30.80591 -30.27067 -29.82412 -27.81065 -26.08294 -24.96949 -23.54792 -22.07198 -21.15124 -20.67285 -20.52495 -18.10950 -18.04669 -17.68425 -17.23363 -17.17014 -16.89228 -16.56718 -16.09271 -15.31042 -14.67251 -14.64364 -14.39706 -14.00070 -13.83272 -13.70491 -13.57902 -13.10822 -12.87997 -12.78944 -12.72228 -12.52545 -12.42043 -12.18327 -11.86166 -11.74113 -11.41121 -11.30210 -11.18782 -11.06618 -10.92266 -10.81467 -10.72969 -10.49138 -10.44316 -10.40604 -9.42128 -8.92406 -8.28119 -7.34464 -6.53671 -4.12294 1.79438 1.91871 2.14120 2.20172 2.25814 2.96579 3.09217 3.10889 3.15254 3.90021 4.17455 4.39313 4.48789 4.52251 4.64223 4.67237 4.74091 4.92448 4.98980 5.02162 5.06694 5.13478 5.15205 5.20122 5.20720 5.24516 5.62397 5.63099 5.64889 5.75888 5.85674 5.98120 6.11895 6.32159 6.54411 6.58662 6.79699 6.96023 7.14040 7.25892 7.32238 7.34437 7.70348 7.79087 7.91212 8.91719 9.59612 10.63850 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.001658 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.330002 B =16886.678976 C =17310.152799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.459 3.541 4 O -0.503 6.503 5 C -0.113 4.113 6 C -0.100 4.100 7 C -0.115 4.115 8 C 0.457 3.543 9 O -0.514 6.514 10 O -0.351 6.351 11 C 0.129 3.871 12 C -0.205 4.205 13 C -0.049 4.049 14 C -0.196 4.196 15 C 0.163 3.837 16 O -0.172 6.172 17 C -0.393 4.393 18 H 0.095 0.905 19 C 0.040 3.960 20 N -0.858 5.858 21 Si 0.943 3.057 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.238 4.238 26 C -0.045 4.045 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.271 0.729 41 H 0.130 0.870 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.321 -12.608 -0.361 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.390 6.390 5 C -0.151 4.151 6 C -0.138 4.138 7 C -0.153 4.153 8 C 0.300 3.700 9 O -0.403 6.403 10 O -0.268 6.268 11 C 0.057 3.943 12 C -0.206 4.206 13 C -0.067 4.067 14 C -0.215 4.215 15 C 0.108 3.892 16 O -0.075 6.075 17 C -0.469 4.469 18 H 0.112 0.888 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.200 1.200 25 C -0.257 4.257 26 C -0.063 4.063 27 H 0.120 0.880 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.337 -11.956 -0.116 26.222 hybrid contribution 0.198 0.130 -0.867 0.899 sum -23.139 -11.825 -0.983 26.004 Atomic orbital electron populations 1.23276 0.76191 1.03744 1.02671 1.86503 1.23599 1.33594 1.84208 1.23813 0.92310 0.81315 0.72400 1.90717 1.67267 1.36298 1.44710 1.21398 0.87498 0.99769 1.06431 1.21250 0.93026 0.93791 1.05726 1.21351 0.96655 0.90969 1.06329 1.23577 0.81261 0.92561 0.72624 1.90675 1.53198 1.50798 1.45585 1.86651 1.25976 1.31158 1.83025 1.21701 0.93160 0.77381 1.02055 1.18875 0.92391 1.15314 0.94003 1.20507 0.93119 0.96628 0.96464 1.20199 0.93408 1.11505 0.96385 1.19444 0.85099 0.91336 0.93319 1.83976 1.13556 1.76700 1.33246 1.21424 0.89733 1.52698 0.83082 0.88811 1.25326 0.95384 0.96326 0.99419 1.70044 1.06917 1.45277 1.27030 0.85619 0.79372 0.78339 0.79947 1.19021 1.20063 1.20048 1.21147 0.94139 1.11848 0.98562 1.20617 0.93626 0.95747 0.96334 0.88034 0.91835 0.91830 0.87139 0.87128 0.89896 0.89896 0.87329 0.87327 0.91237 0.91199 0.86887 0.86196 0.91910 0.85257 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.71 10.56 -39.25 -0.41 -3.13 16 3 C 0.46 3.86 7.96 36.00 0.29 4.15 16 4 O -0.50 -5.99 15.73 -18.75 -0.29 -6.29 16 5 C -0.11 -0.60 5.81 -27.89 -0.16 -0.76 16 6 C -0.10 -0.79 3.79 -26.73 -0.10 -0.89 16 7 C -0.12 -0.86 5.81 -27.88 -0.16 -1.02 16 8 C 0.46 5.65 7.96 36.00 0.29 5.94 16 9 O -0.51 -7.83 15.73 -18.75 -0.29 -8.12 16 10 O -0.35 -4.99 10.20 -39.26 -0.40 -5.39 16 11 C 0.13 1.91 5.59 36.01 0.20 2.11 16 12 C -0.20 -3.53 5.52 -104.58 -0.58 -4.10 16 13 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 14 C -0.20 -4.03 9.99 -39.39 -0.39 -4.43 16 15 C 0.16 3.84 6.65 -39.10 -0.26 3.58 16 16 O -0.17 -4.81 9.76 0.06 0.00 -4.81 16 17 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 18 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.61 13.67 55.48 0.76 -23.85 16 21 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 C -0.24 -5.04 9.17 -39.39 -0.36 -5.40 16 26 C -0.04 -0.81 9.69 -39.61 -0.38 -1.20 16 27 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 33 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 34 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -34.21 372.27 -6.41 -40.62 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.61 Total: 1.83 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.75 Total: -11.46 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.76 Total: -23.85 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -1.40 Total: -27.73 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.21 -6.41 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764594912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.168 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds