Wall clock time and date at job start Sat Apr 11 2020 00:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34225 * 117.00481 * 2 1 4 4 O 1.20829 * 119.99741 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00490 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47296 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46992 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.46884 * 180.02562 * 7 6 5 9 9 O 1.20821 * 120.00185 * 359.97438 * 8 7 6 10 10 O 1.34231 * 120.00087 * 180.02562 * 8 7 6 11 11 C 1.45196 * 117.00047 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47037 * 179.97438 * 11 10 8 13 13 C 1.38294 * 119.93130 * 269.73094 * 12 11 10 14 14 C 1.38099 * 120.07055 * 179.72623 * 13 12 11 15 15 C 1.38885 * 119.92916 * 0.56465 * 14 13 12 16 16 O 1.35746 * 120.07221 * 179.68553 * 15 14 13 17 17 C 1.34828 * 117.00240 * 174.48968 * 16 15 14 18 18 H 1.08006 * 120.00054 * 5.05118 * 17 16 15 19 19 C 1.38655 * 120.00332 * 185.05591 * 17 16 15 20 20 N 1.31553 * 119.99844 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00136 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47289 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47041 * 119.99838 * 21 19 17 24 24 H 1.48501 * 109.47247 * 240.00056 * 21 19 17 25 25 C 1.38888 * 119.85809 * 359.70827 * 15 14 13 26 26 C 1.38097 * 119.93011 * 359.97438 * 25 15 14 27 27 H 1.08994 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47127 * 300.00785 * 1 2 3 29 29 H 1.09003 * 109.47260 * 60.00081 * 1 2 3 30 30 H 1.09001 * 109.47125 * 59.99651 * 5 3 2 31 31 H 1.09000 * 109.47515 * 299.99707 * 5 3 2 32 32 H 1.09001 * 109.46840 * 60.00063 * 6 5 3 33 33 H 1.08996 * 109.47183 * 300.00076 * 6 5 3 34 34 H 1.09001 * 109.47150 * 60.00408 * 7 6 5 35 35 H 1.08996 * 109.47345 * 300.00132 * 7 6 5 36 36 H 1.08996 * 109.47566 * 299.99750 * 11 10 8 37 37 H 1.09002 * 109.47418 * 60.00155 * 11 10 8 38 38 H 1.08001 * 119.96614 * 359.97036 * 13 12 11 39 39 H 1.08000 * 120.04137 * 180.26759 * 14 13 12 40 40 H 0.97003 * 120.00423 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.03290 * 179.97438 * 25 15 14 42 42 H 1.07997 * 119.96090 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 6 5.5281 2.8220 0.0011 8 6 5.9554 4.2671 0.0009 9 8 5.1233 5.1431 -0.0005 10 8 7.2605 4.5811 0.0014 11 6 7.5987 5.9931 0.0007 12 6 9.0975 6.1507 0.0019 13 6 9.7821 6.2293 1.2010 14 6 11.1561 6.3679 1.2056 15 6 11.8492 6.4402 0.0042 16 8 13.1992 6.5830 0.0054 17 6 13.8211 6.5317 -1.1898 18 1 13.2407 6.4648 -2.0982 19 6 15.2058 6.5650 -1.2528 20 7 15.9128 6.6470 -0.1464 21 14 16.0675 6.4933 -2.9086 22 1 15.0542 6.4039 -3.9905 23 1 16.8845 7.7193 -3.0949 24 1 16.9489 5.2990 -2.9567 25 6 11.1582 6.3667 -1.1983 26 6 9.7849 6.2214 -1.1960 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 3.9564 0.7804 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 3.6100 3.2366 0.8893 33 1 3.6108 3.2355 -0.8906 34 1 5.9186 2.3272 -0.8883 35 1 5.9171 2.3285 0.8917 36 1 7.1842 6.4657 -0.8898 37 1 7.1832 6.4668 0.8901 38 1 9.2420 6.1782 2.1349 39 1 11.6906 6.4249 2.1423 40 1 16.8816 6.6698 -0.1903 41 1 11.6944 6.4230 -2.1341 42 1 9.2471 6.1637 -2.1308 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764594912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:41 Heat of formation + Delta-G solvation = -206.976019 kcal Electronic energy + Delta-G solvation = -24972.262437 eV Core-core repulsion = 20882.359755 eV Total energy + Delta-G solvation = -4089.902682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62973 -41.37598 -40.75699 -38.62118 -37.73007 -37.33135 -35.47272 -34.36361 -32.20536 -31.83443 -30.55812 -28.38597 -27.71702 -26.49019 -24.34206 -23.68619 -22.24848 -21.80952 -21.29490 -19.89922 -18.92834 -18.77578 -18.53343 -17.86958 -17.73751 -17.48653 -17.07598 -16.45390 -16.28861 -15.83153 -15.77529 -15.56189 -15.14012 -14.66711 -14.52223 -14.41027 -14.19257 -13.88527 -13.75208 -13.50001 -13.39963 -13.02539 -12.96924 -12.89784 -12.62209 -12.48131 -12.40980 -12.21415 -12.08928 -11.88070 -11.75170 -11.63326 -11.61872 -11.44132 -11.19830 -10.82086 -9.83926 -9.05666 -8.48663 -6.17113 0.44525 0.55730 1.18673 1.25466 1.36810 1.43434 1.54876 1.66389 2.02366 2.17414 2.82954 3.14703 3.45924 3.59270 3.78689 3.91708 3.92739 3.94904 4.00410 4.14734 4.28030 4.30339 4.31616 4.34661 4.53910 4.54160 4.56546 4.64897 4.71692 4.74256 4.74765 4.99229 5.06476 5.12667 5.22756 5.25739 5.43212 5.46048 5.58082 5.66152 5.69270 6.00581 6.12189 6.72776 6.79708 6.95987 7.73894 8.74216 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.001658 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.330002 B =16886.678976 C =17310.152799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.456 3.544 4 O -0.549 6.549 5 C -0.105 4.105 6 C -0.096 4.096 7 C -0.106 4.106 8 C 0.455 3.545 9 O -0.547 6.547 10 O -0.358 6.358 11 C 0.130 3.870 12 C -0.182 4.182 13 C -0.042 4.042 14 C -0.205 4.205 15 C 0.125 3.875 16 O -0.227 6.227 17 C -0.415 4.415 18 H 0.104 0.896 19 C -0.020 4.020 20 N -0.918 5.918 21 Si 1.019 2.981 22 H -0.251 1.251 23 H -0.269 1.269 24 H -0.268 1.268 25 C -0.245 4.245 26 C -0.043 4.043 27 H 0.131 0.869 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.273 0.727 41 H 0.124 0.876 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.421 -14.649 -1.348 29.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.439 6.439 5 C -0.142 4.142 6 C -0.134 4.134 7 C -0.142 4.142 8 C 0.300 3.700 9 O -0.438 6.438 10 O -0.275 6.275 11 C 0.057 3.943 12 C -0.182 4.182 13 C -0.060 4.060 14 C -0.224 4.224 15 C 0.074 3.926 16 O -0.133 6.133 17 C -0.491 4.491 18 H 0.122 0.878 19 C -0.218 4.218 20 N -0.555 5.555 21 Si 0.838 3.162 22 H -0.174 1.174 23 H -0.194 1.194 24 H -0.193 1.193 25 C -0.264 4.264 26 C -0.062 4.062 27 H 0.149 0.851 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.167 0.833 39 H 0.138 0.862 40 H 0.083 0.917 41 H 0.142 0.858 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.502 -14.029 -1.100 29.127 hybrid contribution 0.389 0.706 -0.456 0.926 sum -25.114 -13.324 -1.556 28.472 Atomic orbital electron populations 1.23503 0.75242 1.05585 1.02253 1.86503 1.24663 1.33080 1.83761 1.24489 0.93547 0.80852 0.70975 1.90704 1.68461 1.37712 1.47004 1.21466 0.85217 0.98261 1.09229 1.21139 0.93365 0.95311 1.03571 1.21496 0.96005 0.87679 1.09060 1.24547 0.80029 0.94271 0.71130 1.90676 1.53705 1.52223 1.47172 1.86625 1.27343 1.30120 1.83399 1.21610 0.90987 0.78438 1.03281 1.19264 0.93977 1.11587 0.93409 1.20897 0.91839 0.94805 0.98422 1.20451 0.94814 1.11549 0.95611 1.20000 0.84319 0.92934 0.95354 1.83947 1.15623 1.79949 1.33781 1.21899 0.90515 1.53112 0.83593 0.87836 1.26592 0.95846 0.95685 1.03707 1.70183 1.07255 1.48291 1.29794 0.84520 0.78151 0.78549 0.74938 1.17388 1.19423 1.19315 1.21247 0.95543 1.12032 0.97557 1.20954 0.92374 0.94510 0.98314 0.85079 0.92299 0.92304 0.84180 0.84139 0.92169 0.92206 0.84425 0.84366 0.90280 0.90020 0.83260 0.86241 0.91748 0.85829 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.36 -4.75 10.56 -51.37 -0.54 -5.29 16 3 C 0.46 6.97 7.96 71.23 0.57 7.54 16 4 O -0.55 -13.03 15.73 21.95 0.35 -12.69 16 5 C -0.10 -0.76 5.81 29.85 0.17 -0.58 16 6 C -0.10 -1.28 3.79 30.60 0.12 -1.17 16 7 C -0.11 -1.14 5.81 29.85 0.17 -0.97 16 8 C 0.45 9.85 7.96 71.24 0.57 10.42 16 9 O -0.55 -15.65 15.73 21.98 0.35 -15.31 16 10 O -0.36 -8.82 10.20 -51.43 -0.52 -9.34 16 11 C 0.13 3.36 5.59 71.24 0.40 3.75 16 12 C -0.18 -5.69 5.52 -19.83 -0.11 -5.80 16 13 C -0.04 -1.37 9.69 22.25 0.22 -1.15 16 14 C -0.21 -8.47 9.99 22.39 0.22 -8.24 16 15 C 0.13 6.08 6.65 22.58 0.15 6.23 16 16 O -0.23 -13.39 9.76 -22.68 -0.22 -13.61 16 17 C -0.42 -23.66 9.49 67.92 0.64 -23.02 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 19 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 20 N -0.92 -55.29 13.67 21.61 0.30 -55.00 16 21 Si 1.02 41.86 29.55 68.60 2.03 43.88 16 22 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 25 C -0.24 -10.36 9.17 22.39 0.21 -10.15 16 26 C -0.04 -1.47 9.69 22.25 0.22 -1.26 16 27 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 29 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 30 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.06 1.08 8.06 -2.39 -0.02 1.06 16 33 H 0.06 1.08 8.06 -2.39 -0.02 1.06 16 34 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 37 H 0.08 1.97 8.07 -2.39 -0.02 1.95 16 38 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 42 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -80.63 372.27 7.96 -72.67 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 1.04 Total: 18.31 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 5.20 Total: -23.62 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.30 Total: -55.00 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -0.60 Total: -56.24 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -80.63 7.96 -72.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764594912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.308 kcal (2) G-P(sol) polarization free energy of solvation -80.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds