Wall clock time and date at job start Sat Apr 11 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 120.00437 * 2 1 4 4 H 1.48497 * 109.47080 * 89.99933 * 3 2 1 5 5 H 1.48500 * 109.47180 * 210.00021 * 3 2 1 6 6 H 1.48508 * 109.47019 * 329.99957 * 3 2 1 7 7 C 1.40053 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00472 * 170.43622 * 7 2 1 9 9 C 1.46381 * 119.99954 * 350.44595 * 7 2 1 10 10 O 1.21686 * 119.99595 * 327.24781 * 9 7 2 11 11 N 1.34772 * 119.99995 * 147.25069 * 9 7 2 12 12 C 1.46919 * 120.63391 * 355.20877 * 11 9 7 13 13 C 1.52766 * 109.00630 * 233.58212 * 12 11 9 14 14 C 1.53036 * 109.38313 * 305.58242 * 13 12 11 15 15 C 1.50699 * 109.44689 * 181.25252 * 14 13 12 16 16 N 1.30294 * 126.34130 * 299.62721 * 15 14 13 17 17 N 1.28537 * 110.07741 * 179.82380 * 16 15 14 18 18 C 1.31280 * 109.85187 * 0.45368 * 17 16 15 19 19 S 1.76201 * 126.48059 * 179.72909 * 18 17 16 20 20 N 1.36535 * 107.03631 * 359.72829 * 18 17 16 21 21 C 1.46502 * 127.14490 * 180.02562 * 20 18 17 22 22 C 1.53001 * 117.49659 * 17.74320 * 21 20 18 23 23 C 1.52992 * 117.50049 * 309.08165 * 21 20 18 24 24 C 1.53046 * 109.53416 * 61.24071 * 14 13 12 25 25 C 1.46923 * 120.62831 * 175.48231 * 11 9 7 26 26 H 0.96999 * 119.99845 * 173.79236 * 1 2 3 27 27 H 1.09001 * 109.58443 * 353.41274 * 12 11 9 28 28 H 1.08997 * 109.59180 * 113.84060 * 12 11 9 29 29 H 1.09001 * 109.56381 * 185.54528 * 13 12 11 30 30 H 1.09005 * 109.36053 * 65.50140 * 13 12 11 31 31 H 1.08992 * 109.46082 * 301.22317 * 14 13 12 32 32 H 1.41004 * 100.00259 * 269.99853 * 19 18 17 33 33 H 1.09002 * 115.54766 * 163.40760 * 21 20 18 34 34 H 1.08997 * 117.49885 * 359.97438 * 22 21 20 35 35 H 1.09004 * 117.49673 * 145.01747 * 22 21 20 36 36 H 1.09006 * 117.50226 * 214.97751 * 23 21 20 37 37 H 1.09001 * 117.50257 * 359.97438 * 23 21 20 38 38 H 1.09005 * 109.49443 * 178.68099 * 24 14 13 39 39 H 1.09005 * 109.49742 * 58.59120 * 24 14 13 40 40 H 1.09000 * 109.59285 * 246.15888 * 25 11 9 41 41 H 1.09001 * 109.58921 * 6.43890 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0463 1.4000 5 1 3.5384 1.4400 -0.7000 6 1 1.4383 2.6527 -0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0757 -1.2196 -0.1548 9 6 1.2903 -2.4717 0.2115 10 8 0.3121 -2.5010 0.9348 11 7 1.7138 -3.5981 -0.3952 12 6 2.8279 -3.5595 -1.3522 13 6 2.3819 -4.2080 -2.6614 14 6 1.8468 -5.6130 -2.3758 15 6 1.4349 -6.2658 -3.6702 16 7 0.5251 -5.8345 -4.4971 17 7 0.4302 -6.6297 -5.5026 18 6 1.2751 -7.6250 -5.3651 19 16 1.5041 -8.9668 -6.4840 20 7 1.9427 -7.4238 -4.1913 21 6 2.9867 -8.2719 -3.6108 22 6 3.6835 -9.2693 -4.5384 23 6 2.6923 -9.7678 -3.4839 24 6 0.6363 -5.5200 -1.4439 25 6 1.0661 -4.8872 -0.1167 26 1 -0.4850 -0.8351 -0.0908 27 1 3.1144 -2.5243 -1.5378 28 1 3.6774 -4.1088 -0.9464 29 1 3.2295 -4.2733 -3.3437 30 1 1.5955 -3.6042 -3.1143 31 1 2.6260 -6.2087 -1.9005 32 1 0.5669 -9.8826 -5.9633 33 1 3.5871 -7.8089 -2.8276 34 1 3.3649 -9.2948 -5.5804 35 1 4.7422 -9.4628 -4.3652 36 1 3.0992 -10.2892 -2.6174 37 1 1.7216 -10.1211 -3.8319 38 1 0.2414 -6.5191 -1.2597 39 1 -0.1338 -4.9038 -1.9083 40 1 1.7690 -5.5470 0.3919 41 1 0.1920 -4.7282 0.5147 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772863398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:44 Heat of formation + Delta-G solvation = 67.610058 kcal Electronic energy + Delta-G solvation = -25183.744351 eV Core-core repulsion = 21613.086988 eV Total energy + Delta-G solvation = -3570.657363 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.24569 -38.87947 -38.13801 -36.43745 -33.35492 -32.71259 -32.45502 -30.77407 -29.92300 -26.26828 -24.97266 -24.50563 -23.15714 -22.75323 -22.34970 -21.42631 -20.33590 -19.18831 -18.46554 -17.32521 -17.21403 -16.53329 -15.63681 -15.51671 -14.98841 -14.75905 -14.66442 -14.16463 -13.95656 -13.81528 -13.57376 -13.49480 -12.68450 -12.59195 -12.33718 -12.00077 -11.95837 -11.82131 -11.62249 -11.53155 -11.20433 -11.03801 -10.86706 -10.79604 -10.65576 -10.50397 -10.35228 -10.23212 -9.99333 -9.93995 -9.31548 -8.78813 -8.49939 -7.80817 -7.56323 -6.70771 -4.65042 0.57695 1.03327 1.87852 2.16397 2.65380 3.15025 3.31104 3.32349 3.50211 3.79079 4.05029 4.12897 4.17201 4.26623 4.42854 4.45714 4.54125 4.91725 4.95404 5.01623 5.04039 5.11642 5.31939 5.46366 5.48090 5.50350 5.60654 5.66462 5.67548 5.78944 5.95108 6.00049 6.05893 6.32803 6.41277 6.41953 6.49677 6.65516 7.39117 7.85670 8.01774 8.39182 8.39984 8.85595 9.37027 10.24216 10.62767 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.002971 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.221923 B = 9421.110855 C = 9660.111202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.049 3.951 3 Si 1.080 2.920 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.618 4.618 8 H 0.071 0.929 9 C 0.568 3.432 10 O -0.613 6.613 11 N -0.636 5.636 12 C 0.127 3.873 13 C -0.123 4.123 14 C 0.003 3.997 15 C 0.225 3.775 16 N -0.280 5.280 17 N -0.234 5.234 18 C 0.126 3.874 19 S -0.004 6.004 20 N -0.432 5.432 21 C 0.046 3.954 22 C -0.182 4.182 23 C -0.174 4.174 24 C -0.118 4.118 25 C 0.119 3.881 26 H 0.300 0.700 27 H 0.103 0.897 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.045 -20.954 -10.308 25.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.171 4.171 3 Si 0.905 3.095 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.655 4.655 8 H 0.089 0.911 9 C 0.376 3.624 10 O -0.500 6.500 11 N -0.372 5.372 12 C 0.002 3.998 13 C -0.162 4.162 14 C -0.019 4.019 15 C -0.042 4.042 16 N -0.122 5.122 17 N -0.079 5.079 18 C -0.248 4.248 19 S 0.147 5.853 20 N -0.123 5.123 21 C -0.059 4.059 22 C -0.221 4.221 23 C -0.212 4.212 24 C -0.158 4.158 25 C -0.005 4.005 26 H 0.114 0.886 27 H 0.121 0.879 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.169 0.831 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.484 -19.051 -11.148 23.648 hybrid contribution 0.467 -2.594 1.368 2.970 sum 8.951 -21.645 -9.780 25.383 Atomic orbital electron populations 1.70139 1.07891 1.34780 1.32500 1.26600 0.96036 1.02990 0.91483 0.83454 0.74754 0.73822 0.77514 1.20582 1.20672 1.20469 1.21783 0.96279 0.90793 1.56607 0.91136 1.18529 0.83028 0.82560 0.78324 1.90512 1.31526 1.85526 1.42394 1.48211 1.35849 1.07213 1.45969 1.21283 0.88709 1.02584 0.87181 1.21943 1.01588 0.93478 0.99207 1.19816 0.98997 0.96561 0.86487 1.25525 0.93987 0.85616 0.99111 1.74241 1.16221 1.21942 0.99775 1.74823 1.16617 0.99835 1.16590 1.25696 1.01426 1.04732 0.92912 1.86719 1.51994 1.09228 1.37317 1.46421 1.29513 1.19767 1.16585 1.22144 0.93287 0.87724 1.02725 1.24351 0.99220 0.98599 0.99908 1.23439 1.01539 0.93700 1.02572 1.21940 0.96582 1.01041 0.96235 1.21174 0.98569 0.85963 0.94791 0.88570 0.87910 0.93875 0.91545 0.89961 0.89687 0.93546 0.83133 0.84390 0.86914 0.86665 0.88843 0.91957 0.90134 0.93776 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -25.15 13.34 55.55 0.74 -24.41 16 2 C 0.05 1.38 5.43 -17.36 -0.09 1.28 16 3 Si 1.08 23.56 29.94 -169.99 -5.09 18.47 16 4 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.62 -17.08 8.09 -35.63 -0.29 -17.37 16 8 H 0.07 1.80 6.87 -52.49 -0.36 1.44 16 9 C 0.57 15.71 7.03 -12.99 -0.09 15.62 16 10 O -0.61 -19.12 14.42 5.20 0.08 -19.04 16 11 N -0.64 -13.83 2.98 -174.70 -0.52 -14.35 16 12 C 0.13 2.23 6.25 -3.93 -0.02 2.21 16 13 C -0.12 -1.89 5.33 -26.83 -0.14 -2.03 16 14 C 0.00 0.04 2.53 -91.73 -0.23 -0.20 16 15 C 0.23 3.27 6.57 -154.00 -1.01 2.26 16 16 N -0.28 -4.92 12.18 32.99 0.40 -4.52 16 17 N -0.23 -3.89 12.23 30.68 0.38 -3.52 16 18 C 0.13 1.64 8.18 -88.34 -0.72 0.91 16 19 S 0.00 -0.04 21.71 -107.50 -2.33 -2.37 16 20 N -0.43 -5.14 3.16 -106.47 -0.34 -5.47 16 21 C 0.05 0.36 6.66 -67.93 -0.45 -0.09 16 22 C -0.18 -1.03 9.71 -26.69 -0.26 -1.29 16 23 C -0.17 -1.01 9.99 -26.70 -0.27 -1.27 16 24 C -0.12 -1.87 5.34 -26.61 -0.14 -2.01 16 25 C 0.12 2.19 6.44 -3.72 -0.02 2.17 16 26 H 0.30 9.67 6.44 -40.82 -0.26 9.40 16 27 H 0.10 1.98 5.88 -51.93 -0.31 1.67 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 0.94 6.88 -51.93 -0.36 0.59 16 32 H 0.10 0.69 9.55 96.90 0.93 1.61 16 33 H 0.15 0.95 7.14 -51.93 -0.37 0.58 16 34 H 0.14 0.87 4.46 -29.25 -0.13 0.74 16 35 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.61 7.80 -51.93 -0.41 0.20 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.87 6.99 -51.93 -0.36 1.51 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -35.85 345.99 -9.03 -44.89 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.81 Total: 4.92 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -3.75 Total: 0.19 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.66 Total: -52.27 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.08 Total: -19.04 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.09 Total: 18.47 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.33 Total: -2.37 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.85 -9.03 -44.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772863398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.498 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds