Wall clock time and date at job start Sat Apr 11 2020 00:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 120.00437 * 2 1 4 4 H 1.48497 * 109.47080 * 89.99933 * 3 2 1 5 5 H 1.48500 * 109.47180 * 210.00021 * 3 2 1 6 6 H 1.48508 * 109.47019 * 329.99957 * 3 2 1 7 7 C 1.40053 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00472 * 170.43622 * 7 2 1 9 9 C 1.46381 * 119.99954 * 350.44595 * 7 2 1 10 10 O 1.21686 * 119.99595 * 327.24781 * 9 7 2 11 11 N 1.34772 * 119.99995 * 147.25069 * 9 7 2 12 12 C 1.46919 * 120.63391 * 355.20877 * 11 9 7 13 13 C 1.52766 * 109.00630 * 233.58212 * 12 11 9 14 14 C 1.53036 * 109.38313 * 305.58242 * 13 12 11 15 15 C 1.50699 * 109.44689 * 181.25252 * 14 13 12 16 16 N 1.30294 * 126.34130 * 299.62721 * 15 14 13 17 17 N 1.28537 * 110.07741 * 179.82380 * 16 15 14 18 18 C 1.31280 * 109.85187 * 0.45368 * 17 16 15 19 19 S 1.76201 * 126.48059 * 179.72909 * 18 17 16 20 20 N 1.36535 * 107.03631 * 359.72829 * 18 17 16 21 21 C 1.46502 * 127.14490 * 180.02562 * 20 18 17 22 22 C 1.53001 * 117.49659 * 17.74320 * 21 20 18 23 23 C 1.52992 * 117.50049 * 309.08165 * 21 20 18 24 24 C 1.53046 * 109.53416 * 61.24071 * 14 13 12 25 25 C 1.46923 * 120.62831 * 175.48231 * 11 9 7 26 26 H 0.96999 * 119.99845 * 173.79236 * 1 2 3 27 27 H 1.09001 * 109.58443 * 353.41274 * 12 11 9 28 28 H 1.08997 * 109.59180 * 113.84060 * 12 11 9 29 29 H 1.09001 * 109.56381 * 185.54528 * 13 12 11 30 30 H 1.09005 * 109.36053 * 65.50140 * 13 12 11 31 31 H 1.08992 * 109.46082 * 301.22317 * 14 13 12 32 32 H 1.41004 * 100.00259 * 269.99853 * 19 18 17 33 33 H 1.09002 * 115.54766 * 163.40760 * 21 20 18 34 34 H 1.08997 * 117.49885 * 359.97438 * 22 21 20 35 35 H 1.09004 * 117.49673 * 145.01747 * 22 21 20 36 36 H 1.09006 * 117.50226 * 214.97751 * 23 21 20 37 37 H 1.09001 * 117.50257 * 359.97438 * 23 21 20 38 38 H 1.09005 * 109.49443 * 178.68099 * 24 14 13 39 39 H 1.09005 * 109.49742 * 58.59120 * 24 14 13 40 40 H 1.09000 * 109.59285 * 246.15888 * 25 11 9 41 41 H 1.09001 * 109.58921 * 6.43890 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4884 2.0463 1.4000 5 1 3.5384 1.4400 -0.7000 6 1 1.4383 2.6527 -0.7001 7 6 2.0070 -1.2129 0.0005 8 1 3.0757 -1.2196 -0.1548 9 6 1.2903 -2.4717 0.2115 10 8 0.3121 -2.5010 0.9348 11 7 1.7138 -3.5981 -0.3952 12 6 2.8279 -3.5595 -1.3522 13 6 2.3819 -4.2080 -2.6614 14 6 1.8468 -5.6130 -2.3758 15 6 1.4349 -6.2658 -3.6702 16 7 0.5251 -5.8345 -4.4971 17 7 0.4302 -6.6297 -5.5026 18 6 1.2751 -7.6250 -5.3651 19 16 1.5041 -8.9668 -6.4840 20 7 1.9427 -7.4238 -4.1913 21 6 2.9867 -8.2719 -3.6108 22 6 3.6835 -9.2693 -4.5384 23 6 2.6923 -9.7678 -3.4839 24 6 0.6363 -5.5200 -1.4439 25 6 1.0661 -4.8872 -0.1167 26 1 -0.4850 -0.8351 -0.0908 27 1 3.1144 -2.5243 -1.5378 28 1 3.6774 -4.1088 -0.9464 29 1 3.2295 -4.2733 -3.3437 30 1 1.5955 -3.6042 -3.1143 31 1 2.6260 -6.2087 -1.9005 32 1 0.5669 -9.8826 -5.9633 33 1 3.5871 -7.8089 -2.8276 34 1 3.3649 -9.2948 -5.5804 35 1 4.7422 -9.4628 -4.3652 36 1 3.0992 -10.2892 -2.6174 37 1 1.7216 -10.1211 -3.8319 38 1 0.2414 -6.5191 -1.2597 39 1 -0.1338 -4.9038 -1.9083 40 1 1.7690 -5.5470 0.3919 41 1 0.1920 -4.7282 0.5147 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772863398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:43 Heat of formation + Delta-G solvation = 43.560379 kcal Electronic energy + Delta-G solvation = -25184.787224 eV Core-core repulsion = 21613.086988 eV Total energy + Delta-G solvation = -3571.700235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.25667 -40.56799 -38.72586 -38.24958 -34.78518 -34.55554 -33.73856 -32.21930 -31.18230 -28.17981 -26.41532 -25.44209 -24.22853 -23.73165 -23.31668 -22.57823 -21.68269 -20.74519 -19.38969 -18.96304 -18.09227 -17.50690 -17.40422 -16.48582 -16.16990 -16.02968 -15.78732 -15.62226 -15.54854 -15.13473 -14.96881 -14.59512 -14.28127 -13.84892 -13.48250 -13.20451 -13.13092 -13.02467 -12.86753 -12.65717 -12.57203 -12.30524 -12.26933 -12.06923 -11.92882 -11.83544 -11.80106 -11.67234 -11.50128 -10.88365 -10.69158 -10.42099 -9.96068 -9.38339 -9.14859 -8.89601 -6.87050 -0.22575 0.12865 1.10194 1.33899 1.54427 1.58640 1.65622 1.82874 2.30981 2.43972 2.67548 2.69934 2.93850 3.30264 3.38553 3.46630 3.68847 3.71603 3.83823 3.91735 4.03429 4.09366 4.21292 4.29391 4.40727 4.59221 4.66560 4.69611 4.70830 4.76057 4.81535 4.84048 4.98547 5.02736 5.04764 5.19873 5.32007 5.55367 5.58881 5.73367 6.08919 6.18581 6.80333 7.31647 7.34438 8.13397 8.35941 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.024086 B = 0.002971 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.221923 B = 9421.110855 C = 9660.111202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C -0.003 4.003 3 Si 1.134 2.866 4 H -0.269 1.269 5 H -0.246 1.246 6 H -0.280 1.280 7 C -0.634 4.634 8 H 0.091 0.909 9 C 0.552 3.448 10 O -0.662 6.662 11 N -0.637 5.637 12 C 0.124 3.876 13 C -0.113 4.113 14 C 0.015 3.985 15 C 0.219 3.781 16 N -0.330 5.330 17 N -0.285 5.285 18 C 0.132 3.868 19 S 0.022 5.978 20 N -0.421 5.421 21 C 0.013 3.987 22 C -0.169 4.169 23 C -0.163 4.163 24 C -0.107 4.107 25 C 0.118 3.882 26 H 0.273 0.727 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.172 0.828 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.038 0.962 40 H 0.086 0.914 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.942 -23.583 -10.883 29.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.215 4.215 3 Si 0.951 3.049 4 H -0.194 1.194 5 H -0.169 1.169 6 H -0.205 1.205 7 C -0.670 4.670 8 H 0.109 0.891 9 C 0.358 3.642 10 O -0.553 6.553 11 N -0.371 5.371 12 C 0.001 3.999 13 C -0.152 4.152 14 C -0.006 4.006 15 C -0.051 4.051 16 N -0.171 5.171 17 N -0.129 5.129 18 C -0.244 4.244 19 S 0.173 5.827 20 N -0.111 5.111 21 C -0.090 4.090 22 C -0.208 4.208 23 C -0.201 4.201 24 C -0.146 4.146 25 C -0.005 4.005 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.059 0.941 31 H 0.147 0.853 32 H 0.084 0.916 33 H 0.189 0.811 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.433 -21.755 -11.752 27.676 hybrid contribution -0.712 -2.035 1.477 2.613 sum 11.721 -23.790 -10.275 28.441 Atomic orbital electron populations 1.70306 1.09384 1.32993 1.36335 1.28506 0.95897 1.07546 0.89507 0.82840 0.74728 0.68942 0.78424 1.19442 1.16926 1.20486 1.22199 0.97398 0.91288 1.56135 0.89069 1.18832 0.82584 0.84515 0.78248 1.90468 1.33359 1.86774 1.44682 1.48101 1.36554 1.06997 1.45464 1.21513 0.88485 1.02563 0.87337 1.21794 1.01419 0.93821 0.98191 1.19710 0.98729 0.96110 0.86032 1.25358 0.94051 0.86707 0.98987 1.74118 1.18223 1.23695 1.01042 1.74726 1.19178 1.01522 1.17430 1.26339 0.99897 1.04730 0.93401 1.86639 1.52175 1.07404 1.36496 1.46605 1.29542 1.19085 1.15837 1.22751 0.93350 0.88401 1.04453 1.24426 1.00590 0.96538 0.99210 1.23549 1.01347 0.91789 1.03450 1.21760 0.96724 1.01144 0.95000 1.21335 0.98064 0.85107 0.95973 0.91453 0.89877 0.89527 0.88513 0.94052 0.85299 0.91600 0.81086 0.85193 0.84370 0.84326 0.89697 0.89414 0.94331 0.89603 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -55.16 13.34 21.84 0.29 -54.87 16 2 C 0.00 -0.17 5.43 85.31 0.46 0.29 16 3 Si 1.13 47.22 29.94 68.60 2.05 49.27 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 5 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 6 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.63 -35.65 8.09 24.83 0.20 -35.45 16 8 H 0.09 4.60 6.87 -2.91 -0.02 4.58 16 9 C 0.55 31.64 7.03 86.36 0.61 32.25 16 10 O -0.66 -43.74 14.42 -4.30 -0.06 -43.80 16 11 N -0.64 -27.84 2.98 -824.85 -2.46 -30.30 16 12 C 0.12 4.14 6.25 86.22 0.54 4.68 16 13 C -0.11 -3.34 5.33 30.53 0.16 -3.17 16 14 C 0.02 0.38 2.53 -11.51 -0.03 0.35 16 15 C 0.22 6.10 6.57 137.63 0.90 7.01 16 16 N -0.33 -11.89 12.18 -49.53 -0.60 -12.49 16 17 N -0.28 -9.60 12.23 -56.86 -0.70 -10.30 16 18 C 0.13 3.24 8.18 179.55 1.47 4.71 16 19 S 0.02 0.33 21.71 -56.49 -1.23 -0.90 16 20 N -0.42 -9.02 3.16 -490.76 -1.55 -10.57 16 21 C 0.01 0.15 6.66 44.99 0.30 0.45 16 22 C -0.17 -1.16 9.71 30.62 0.30 -0.86 16 23 C -0.16 -1.17 9.99 30.62 0.31 -0.86 16 24 C -0.11 -3.34 5.34 30.67 0.16 -3.17 16 25 C 0.12 4.32 6.44 86.36 0.56 4.87 16 26 H 0.27 18.90 6.44 -92.71 -0.60 18.30 16 27 H 0.08 3.13 5.88 -2.39 -0.01 3.11 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.13 2.18 6.88 -2.39 -0.02 2.17 16 32 H 0.12 1.30 9.55 73.80 0.70 2.01 16 33 H 0.17 1.22 7.14 -2.39 -0.02 1.20 16 34 H 0.13 1.15 4.46 -16.81 -0.08 1.07 16 35 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.14 0.38 8.14 -2.38 -0.02 0.36 16 37 H 0.08 0.79 7.80 -2.39 -0.02 0.77 16 38 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.05 2.33 6.99 -2.39 -0.02 2.31 16 Total: -1.00 -86.98 345.99 3.59 -83.39 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.90 Total: 19.47 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.94 Total: 11.09 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -5.02 Total: -118.52 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.06 Total: -43.80 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.05 Total: 49.27 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.23 Total: -0.90 kcal Total: -86.98 3.59 -83.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772863398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.954 kcal (2) G-P(sol) polarization free energy of solvation -86.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds