Wall clock time and date at job start Sat Apr 11 2020 00:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47102 * 239.99709 * 3 2 1 5 5 H 1.48503 * 109.47271 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47010 * 119.99856 * 3 2 1 7 7 C 1.37884 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47162 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46938 * 179.97438 * 10 9 7 12 12 C 1.34782 * 119.99675 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00071 * 4.97931 * 12 11 10 14 14 N 1.34774 * 119.99915 * 184.98301 * 12 11 10 15 15 C 1.46926 * 120.63121 * 174.77166 * 14 12 11 16 16 C 1.53195 * 108.89465 * 126.33965 * 15 14 12 17 17 C 1.53354 * 109.14570 * 54.57617 * 16 15 14 18 18 C 1.50707 * 109.41474 * 178.67223 * 17 16 15 19 19 O 1.20765 * 119.99531 * 95.12628 * 18 17 16 20 20 C 1.50690 * 120.00277 * 275.12854 * 18 17 16 21 21 F 1.39898 * 109.47546 * 179.97438 * 20 18 17 22 22 F 1.39901 * 109.47234 * 300.00367 * 20 18 17 23 23 F 1.39903 * 109.47013 * 60.00081 * 20 18 17 24 24 C 1.53040 * 109.60905 * 298.70899 * 17 16 15 25 25 C 1.46926 * 120.63157 * 354.78914 * 14 12 11 26 26 H 0.96997 * 119.99719 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47091 * 59.99519 * 9 7 2 28 28 H 1.09004 * 109.46910 * 299.99680 * 9 7 2 29 29 H 1.09007 * 109.46974 * 59.99996 * 10 9 7 30 30 H 1.08998 * 109.47220 * 300.00265 * 10 9 7 31 31 H 0.96993 * 120.00686 * 359.97438 * 11 10 9 32 32 H 1.08999 * 109.58363 * 246.19988 * 15 14 12 33 33 H 1.09002 * 109.58625 * 6.48116 * 15 14 12 34 34 H 1.08997 * 109.49623 * 174.65400 * 16 15 14 35 35 H 1.09002 * 109.49577 * 294.75334 * 16 15 14 36 36 H 1.08994 * 109.43406 * 58.76165 * 17 16 15 37 37 H 1.08993 * 109.50186 * 301.42491 * 24 17 16 38 38 H 1.09004 * 109.52060 * 181.34332 * 24 17 16 39 39 H 1.09010 * 109.58451 * 353.37613 * 25 14 12 40 40 H 1.08999 * 109.58904 * 113.65827 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5125 -4.9308 0.0012 12 6 2.1864 -6.0981 0.0018 13 8 3.3987 -6.1001 0.0932 14 7 1.5163 -7.2631 -0.0990 15 6 2.2409 -8.5360 -0.2147 16 6 1.7429 -9.4912 0.8745 17 6 0.2184 -9.6207 0.7713 18 6 -0.2746 -10.5847 1.8196 19 8 -0.6723 -10.1699 2.8818 20 6 -0.2712 -12.0658 1.5425 21 9 -0.7696 -12.7499 2.6564 22 9 -1.0772 -12.3342 0.4309 23 9 1.0368 -12.4887 1.2830 24 6 -0.4295 -8.2519 0.9922 25 6 0.0472 -7.2844 -0.0957 26 1 -0.4849 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6045 0.8906 30 1 2.8718 -3.6045 -0.8894 31 1 0.5426 -4.9309 0.0019 32 1 2.0571 -8.9732 -1.1961 33 1 3.3092 -8.3612 -0.0869 34 1 2.2045 -10.4693 0.7394 35 1 2.0085 -9.0952 1.8547 36 1 -0.0478 -9.9931 -0.2179 37 1 -0.1437 -7.8679 1.9713 38 1 -1.5140 -8.3500 0.9421 39 1 -0.3323 -6.2841 0.1132 40 1 -0.3157 -7.6171 -1.0682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773443825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:46 Heat of formation + Delta-G solvation = -217.647271 kcal Electronic energy + Delta-G solvation = -27317.300108 eV Core-core repulsion = 22717.370696 eV Total energy + Delta-G solvation = -4599.929411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.79382 -48.31406 -48.28374 -40.98040 -39.89658 -37.43813 -34.94825 -33.54486 -32.76011 -31.46403 -29.70080 -28.89184 -26.08122 -24.65225 -23.61223 -22.40422 -21.21869 -20.81651 -19.59771 -19.20822 -19.06095 -18.70372 -18.03121 -16.53312 -16.21665 -15.92880 -15.59518 -15.46241 -15.06283 -14.98184 -14.68723 -14.64313 -14.51946 -14.40510 -14.39908 -14.37206 -14.24956 -13.83675 -13.70613 -13.33694 -12.80265 -12.66236 -12.50121 -12.27638 -11.66876 -11.36005 -11.24492 -11.07438 -11.02719 -10.66087 -10.56515 -10.33539 -9.94903 -9.56722 -9.29446 -8.85217 -8.48499 -8.26093 -6.10352 -4.13022 0.49910 1.62575 2.74143 2.82302 3.26750 3.30876 3.34694 3.38153 3.45948 3.56112 3.78598 4.08953 4.13828 4.24269 4.42987 4.59565 4.66721 4.91299 4.96849 5.18338 5.20663 5.26826 5.28958 5.43754 5.62813 5.65019 5.78382 6.08450 6.21623 6.37340 6.47457 6.74738 6.94811 7.07163 7.53099 7.60971 7.88451 8.20828 8.32149 8.87627 8.93998 9.51757 11.01309 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.031543 B = 0.002211 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.459949 B =12658.533715 C =13109.581865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.138 3.862 11 N -0.738 5.738 12 C 0.704 3.296 13 O -0.594 6.594 14 N -0.638 5.638 15 C 0.135 3.865 16 C -0.127 4.127 17 C -0.124 4.124 18 C 0.333 3.667 19 O -0.369 6.369 20 C 0.418 3.582 21 F -0.166 7.166 22 F -0.166 7.166 23 F -0.165 7.165 24 C -0.124 4.124 25 C 0.114 3.886 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.392 0.608 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 -26.137 0.007 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.016 3.984 11 N -0.393 5.393 12 C 0.405 3.595 13 O -0.472 6.472 14 N -0.377 5.377 15 C 0.011 3.989 16 C -0.166 4.166 17 C -0.143 4.143 18 C 0.199 3.801 19 O -0.233 6.233 20 C 0.362 3.638 21 F -0.147 7.147 22 F -0.147 7.147 23 F -0.146 7.146 24 C -0.163 4.163 25 C -0.010 4.010 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.228 0.772 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.196 -25.748 0.662 25.954 hybrid contribution -0.263 0.408 -0.018 0.486 sum -3.459 -25.340 0.644 25.583 Atomic orbital electron populations 1.69943 1.06092 1.26993 1.50339 1.24995 0.94899 0.99405 0.94976 0.86564 0.79512 0.82615 0.78798 1.20103 1.21262 1.20095 1.21009 0.93239 0.90343 1.51424 0.92258 1.19315 0.94238 0.91083 0.97753 1.21619 0.95687 0.80400 1.00709 1.45723 1.09917 1.05353 1.78327 1.15952 0.85331 0.80399 0.77822 1.90881 1.12021 1.86115 1.58199 1.47301 1.05731 1.05642 1.79053 1.21330 0.98660 0.81891 0.97018 1.22084 0.90910 1.01516 1.02089 1.21836 0.98672 0.95299 0.98499 1.25595 0.76222 0.88124 0.90182 1.90564 1.30497 1.78028 1.24226 1.21265 0.74920 0.92284 0.75312 1.93264 1.87354 1.81819 1.52283 1.93257 1.73397 1.94924 1.53149 1.93251 1.36069 1.91429 1.93847 1.21916 1.00652 0.92352 1.01335 1.21580 0.80505 1.00399 0.98505 0.92790 0.96010 0.96009 0.92676 0.92762 0.77205 0.91301 0.87888 0.89326 0.90136 0.86675 0.89724 0.89732 0.89224 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 10 C 0.14 2.92 5.62 -4.04 -0.02 2.90 16 11 N -0.74 -12.72 5.47 -65.23 -0.36 -13.08 16 12 C 0.70 11.84 8.29 -86.91 -0.72 11.12 16 13 O -0.59 -12.26 15.77 5.29 0.08 -12.18 16 14 N -0.64 -7.53 2.97 -178.49 -0.53 -8.06 16 15 C 0.13 1.25 6.43 -3.71 -0.02 1.22 16 16 C -0.13 -0.91 5.33 -26.45 -0.14 -1.05 16 17 C -0.12 -0.79 2.38 -91.56 -0.22 -1.01 16 18 C 0.33 2.53 5.83 -29.04 -0.17 2.36 16 19 O -0.37 -3.79 16.38 6.00 0.10 -3.70 16 20 C 0.42 3.06 3.37 36.00 0.12 3.18 16 21 F -0.17 -1.50 16.92 2.25 0.04 -1.46 16 22 F -0.17 -1.14 17.19 2.25 0.04 -1.11 16 23 F -0.16 -1.15 16.13 2.25 0.04 -1.12 16 24 C -0.12 -0.92 4.87 -26.61 -0.13 -1.05 16 25 C 0.11 0.97 6.39 -3.71 -0.02 0.95 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.39 5.81 5.96 -40.82 -0.24 5.57 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.10 1.16 6.99 -51.93 -0.36 0.80 16 34 H 0.09 0.48 7.02 -51.93 -0.36 0.11 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.12 0.48 8.04 -51.93 -0.42 0.06 16 37 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.80 5.65 -51.92 -0.29 0.50 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -32.72 345.91 -6.56 -39.28 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.02 Total: -0.58 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.88 Total: 5.71 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: -0.15 Total: -46.29 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.18 Total: -15.88 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.11 Total: -3.68 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.72 -6.56 -39.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773443825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.367 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds