Wall clock time and date at job start Sat Apr 11 2020 00:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38283 * 119.94732 * 2 1 4 4 C 1.38266 * 120.15870 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.04698 * 359.74444 * 4 3 2 6 6 F 1.35102 * 120.06054 * 180.27637 * 5 4 3 7 7 C 1.39057 * 119.88451 * 0.52923 * 5 4 3 8 8 N 1.40033 * 120.07905 * 179.74394 * 7 5 4 9 9 C 1.34777 * 119.99786 * 132.60483 * 8 7 5 10 10 S 1.71196 * 120.00020 * 4.95138 * 9 8 7 11 11 N 1.34774 * 119.99714 * 184.94524 * 9 8 7 12 12 C 1.46930 * 120.63362 * 5.38796 * 11 9 8 13 13 C 1.52760 * 109.01107 * 233.58467 * 12 11 9 14 14 C 1.53043 * 109.38092 * 305.58775 * 13 12 11 15 15 C 1.50698 * 109.44835 * 181.25349 * 14 13 12 16 16 H 1.07999 * 120.00411 * 238.91626 * 15 14 13 17 17 C 1.37874 * 119.99937 * 58.91359 * 15 14 13 18 18 N 1.31514 * 119.99914 * 6.74350 * 17 15 14 19 19 Si 1.86802 * 120.00133 * 186.74337 * 17 15 14 20 20 H 1.48496 * 109.47344 * 94.99461 * 19 17 15 21 21 H 1.48498 * 109.47300 * 214.99770 * 19 17 15 22 22 H 1.48508 * 109.46848 * 334.99381 * 19 17 15 23 23 C 1.53045 * 109.53869 * 61.24165 * 14 13 12 24 24 C 1.46927 * 120.63058 * 185.66938 * 11 9 8 25 25 C 1.38146 * 119.94218 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47001 * 269.97813 * 1 2 3 27 27 H 1.09003 * 109.46877 * 29.97376 * 1 2 3 28 28 H 1.08995 * 109.47321 * 149.97440 * 1 2 3 29 29 H 1.07997 * 119.91687 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.97714 * 179.97438 * 4 3 2 31 31 H 0.96996 * 119.99887 * 312.33984 * 8 7 5 32 32 H 1.09001 * 109.58292 * 353.42067 * 12 11 9 33 33 H 1.08997 * 109.58304 * 113.84134 * 12 11 9 34 34 H 1.08995 * 109.56230 * 185.55415 * 13 12 11 35 35 H 1.08994 * 109.38543 * 65.51185 * 13 12 11 36 36 H 1.08998 * 109.46180 * 301.22090 * 14 13 12 37 37 H 0.97006 * 119.99799 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.49205 * 178.68604 * 23 14 13 39 39 H 1.08999 * 109.52343 * 58.59722 * 23 14 13 40 40 H 1.09000 * 109.58571 * 246.15470 * 24 11 9 41 41 H 1.09006 * 109.58632 * 6.43722 * 24 11 9 42 42 H 1.08000 * 120.02596 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5799 1.2033 -0.0005 5 6 4.2769 0.0087 0.0043 6 9 5.6279 0.0134 0.0094 7 6 3.5846 -1.1973 -0.0015 8 7 4.2862 -2.4092 -0.0021 9 6 3.9367 -3.3905 0.8532 10 16 2.5581 -3.2055 1.8511 11 7 4.6726 -4.5175 0.9226 12 6 5.9225 -4.6436 0.1606 13 6 5.8663 -5.9177 -0.6803 14 6 5.5594 -7.1117 0.2266 15 6 5.5339 -8.3736 -0.5967 16 1 4.6415 -8.9810 -0.6266 17 6 6.6501 -8.7528 -1.3119 18 7 7.7769 -8.0891 -1.1727 19 14 6.5617 -10.2091 -2.4784 20 1 6.2809 -9.7252 -3.8540 21 1 7.8574 -10.9344 -2.4637 22 1 5.4765 -11.1254 -2.0448 23 6 4.1968 -6.9107 0.8938 24 6 4.2371 -5.6457 1.7570 25 6 2.1965 -1.1971 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6551 2.1322 0.0004 30 1 4.1161 2.1408 -0.0010 31 1 5.0211 -2.5439 -0.6206 32 1 6.0400 -3.7801 -0.4941 33 1 6.7658 -4.7003 0.8489 34 1 6.8261 -6.0724 -1.1731 35 1 5.0828 -5.8208 -1.4318 36 1 6.3303 -7.1934 0.9927 37 1 8.5621 -8.3556 -1.6762 38 1 3.9685 -7.7722 1.5213 39 1 3.4284 -6.8043 0.1281 40 1 4.9402 -5.7858 2.5780 41 1 3.2438 -5.4421 2.1572 42 1 1.6560 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781546193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:53 Heat of formation + Delta-G solvation = -3.724704 kcal Electronic energy + Delta-G solvation = -24793.575878 eV Core-core repulsion = 21199.905246 eV Total energy + Delta-G solvation = -3593.670632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.02552 -40.29375 -39.07619 -36.66387 -34.10418 -32.38135 -31.67791 -30.81599 -29.72023 -27.07700 -26.53697 -24.44879 -23.29973 -22.73317 -21.66043 -21.34729 -19.43502 -18.38969 -17.86320 -17.20379 -16.59723 -16.37158 -15.91504 -15.61040 -14.71314 -14.61679 -14.49584 -14.31993 -14.02747 -13.72957 -13.59203 -13.39791 -13.13403 -12.84852 -12.68400 -12.12184 -12.05743 -11.84590 -11.63704 -11.53904 -11.39678 -11.04679 -11.02811 -10.80049 -10.63046 -10.32757 -9.93033 -9.62349 -9.32891 -9.13720 -8.79100 -8.51291 -8.28521 -7.55723 -6.96645 -6.20547 -4.24763 0.82291 1.14903 1.64992 2.03544 2.67280 3.18974 3.24535 3.27498 3.30584 3.47184 4.08011 4.29207 4.59706 4.71834 4.95824 5.02470 5.05569 5.12172 5.31100 5.41114 5.53837 5.56481 5.58606 5.68663 5.74654 5.82888 5.92881 5.95453 5.98245 6.13967 6.14996 6.29008 6.37534 6.44467 6.52329 6.70405 6.77762 6.81844 6.97565 7.01786 7.33198 7.46841 7.66651 7.81031 8.20457 8.78308 9.40960 10.86639 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.003168 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.687208 B = 8837.259968 C = 9316.067410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.093 4.093 3 C -0.091 4.091 4 C -0.151 4.151 5 C 0.084 3.916 6 F -0.140 7.140 7 C 0.106 3.894 8 N -0.641 5.641 9 C 0.564 3.436 10 S -0.658 6.658 11 N -0.536 5.536 12 C 0.089 3.911 13 C -0.122 4.122 14 C 0.047 3.953 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.122 4.122 24 C 0.098 3.902 25 C -0.039 4.039 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.409 0.591 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.044 0.956 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 16.762 0.271 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.109 4.109 4 C -0.171 4.171 5 C 0.062 3.938 6 F -0.118 7.118 7 C 0.011 3.989 8 N -0.272 5.272 9 C 0.204 3.796 10 S -0.525 6.525 11 N -0.240 5.240 12 C -0.036 4.036 13 C -0.161 4.161 14 C 0.028 3.972 15 C -0.552 4.552 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.161 4.161 24 C -0.023 4.023 25 C -0.062 4.062 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.149 0.851 30 H 0.155 0.845 31 H 0.251 0.749 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.031 16.688 0.909 18.542 hybrid contribution 1.718 -0.917 -1.491 2.453 sum -6.313 15.772 -0.581 16.998 Atomic orbital electron populations 1.20729 0.90405 1.02676 1.02703 1.19800 0.96698 0.92088 1.00923 1.20904 0.92863 0.98082 0.99080 1.20850 0.94898 0.96194 1.05147 1.17610 0.76716 0.93415 1.06015 1.91483 1.28857 1.97353 1.94130 1.17353 0.91793 0.82412 1.07320 1.42159 1.35987 1.12617 1.36403 1.22256 0.90390 0.81895 0.85043 1.93115 1.20739 1.88142 1.50544 1.47685 1.21100 1.12520 1.42699 1.22342 0.84630 1.00953 0.95627 1.21981 1.04411 0.91601 0.98102 1.18675 0.91100 0.93133 0.94289 1.21156 0.98768 1.07180 1.28139 0.92388 1.24965 0.95176 0.96805 0.96936 1.69870 1.00721 1.40950 1.41415 0.86586 0.77587 0.82621 0.81319 1.20708 1.21191 1.19772 1.22047 1.01113 0.94300 0.98620 1.22529 1.03311 0.83800 0.92687 1.21384 0.91386 1.00017 0.93411 0.90842 0.91635 0.91270 0.85066 0.84540 0.74929 0.92035 0.89794 0.87525 0.93756 0.94993 0.92833 0.90999 0.92536 0.90634 0.86595 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 2 C -0.09 -1.00 5.88 -104.64 -0.62 -1.62 16 3 C -0.09 -0.85 9.69 -39.55 -0.38 -1.23 16 4 C -0.15 -1.55 10.02 -39.55 -0.40 -1.95 16 5 C 0.08 1.07 7.31 -39.25 -0.29 0.79 16 6 F -0.14 -1.86 17.08 2.25 0.04 -1.82 16 7 C 0.11 1.47 5.90 -83.59 -0.49 0.97 16 8 N -0.64 -9.24 5.05 -11.34 -0.06 -9.29 16 9 C 0.56 9.36 7.58 -86.92 -0.66 8.70 16 10 S -0.66 -12.23 24.21 -107.50 -2.60 -14.83 16 11 N -0.54 -8.86 2.98 -175.05 -0.52 -9.38 16 12 C 0.09 1.43 6.40 -3.93 -0.03 1.41 16 13 C -0.12 -2.45 5.13 -26.83 -0.14 -2.58 16 14 C 0.05 1.02 2.03 -91.73 -0.19 0.84 16 15 C -0.51 -12.97 8.57 -34.44 -0.30 -13.26 16 16 H 0.06 1.47 7.75 -52.49 -0.41 1.06 16 17 C 0.06 1.61 5.21 -17.82 -0.09 1.51 16 18 N -0.89 -23.39 11.54 55.43 0.64 -22.75 16 19 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.12 -2.30 5.30 -26.61 -0.14 -2.44 16 24 C 0.10 1.66 6.30 -3.71 -0.02 1.64 16 25 C -0.04 -0.52 7.53 -39.40 -0.30 -0.82 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.41 5.25 6.32 -40.82 -0.26 5.00 16 32 H 0.06 0.84 5.58 -51.93 -0.29 0.55 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.11 2.40 6.22 -51.93 -0.32 2.08 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.12 2.00 6.00 -50.62 -0.30 1.70 16 42 H 0.16 2.32 6.25 -48.35 -0.30 2.02 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -28.22 350.30 -11.58 -39.80 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.66 Total: 6.50 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.67 Total: -8.60 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.06 Total: -41.42 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: -12.23 SS G_CDS: -2.60 Total: -14.83 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.22 -11.58 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781546193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.080 kcal (2) G-P(sol) polarization free energy of solvation -28.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds