Wall clock time and date at job start Sat Apr 11 2020 00:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38283 * 119.94732 * 2 1 4 4 C 1.38266 * 120.15870 * 180.02562 * 3 2 1 5 5 C 1.38304 * 120.04698 * 359.74444 * 4 3 2 6 6 F 1.35102 * 120.06054 * 180.27637 * 5 4 3 7 7 C 1.39057 * 119.88451 * 0.52923 * 5 4 3 8 8 N 1.40033 * 120.07905 * 179.74394 * 7 5 4 9 9 C 1.34777 * 119.99786 * 132.60483 * 8 7 5 10 10 S 1.71196 * 120.00020 * 4.95138 * 9 8 7 11 11 N 1.34774 * 119.99714 * 184.94524 * 9 8 7 12 12 C 1.46930 * 120.63362 * 5.38796 * 11 9 8 13 13 C 1.52760 * 109.01107 * 233.58467 * 12 11 9 14 14 C 1.53043 * 109.38092 * 305.58775 * 13 12 11 15 15 C 1.50698 * 109.44835 * 181.25349 * 14 13 12 16 16 H 1.07999 * 120.00411 * 238.91626 * 15 14 13 17 17 C 1.37874 * 119.99937 * 58.91359 * 15 14 13 18 18 N 1.31514 * 119.99914 * 6.74350 * 17 15 14 19 19 Si 1.86802 * 120.00133 * 186.74337 * 17 15 14 20 20 H 1.48496 * 109.47344 * 94.99461 * 19 17 15 21 21 H 1.48498 * 109.47300 * 214.99770 * 19 17 15 22 22 H 1.48508 * 109.46848 * 334.99381 * 19 17 15 23 23 C 1.53045 * 109.53869 * 61.24165 * 14 13 12 24 24 C 1.46927 * 120.63058 * 185.66938 * 11 9 8 25 25 C 1.38146 * 119.94218 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47001 * 269.97813 * 1 2 3 27 27 H 1.09003 * 109.46877 * 29.97376 * 1 2 3 28 28 H 1.08995 * 109.47321 * 149.97440 * 1 2 3 29 29 H 1.07997 * 119.91687 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.97714 * 179.97438 * 4 3 2 31 31 H 0.96996 * 119.99887 * 312.33984 * 8 7 5 32 32 H 1.09001 * 109.58292 * 353.42067 * 12 11 9 33 33 H 1.08997 * 109.58304 * 113.84134 * 12 11 9 34 34 H 1.08995 * 109.56230 * 185.55415 * 13 12 11 35 35 H 1.08994 * 109.38543 * 65.51185 * 13 12 11 36 36 H 1.08998 * 109.46180 * 301.22090 * 14 13 12 37 37 H 0.97006 * 119.99799 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.49205 * 178.68604 * 23 14 13 39 39 H 1.08999 * 109.52343 * 58.59722 * 23 14 13 40 40 H 1.09000 * 109.58571 * 246.15470 * 24 11 9 41 41 H 1.09006 * 109.58632 * 6.43722 * 24 11 9 42 42 H 1.08000 * 120.02596 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5799 1.2033 -0.0005 5 6 4.2769 0.0087 0.0043 6 9 5.6279 0.0134 0.0094 7 6 3.5846 -1.1973 -0.0015 8 7 4.2862 -2.4092 -0.0021 9 6 3.9367 -3.3905 0.8532 10 16 2.5581 -3.2055 1.8511 11 7 4.6726 -4.5175 0.9226 12 6 5.9225 -4.6436 0.1606 13 6 5.8663 -5.9177 -0.6803 14 6 5.5594 -7.1117 0.2266 15 6 5.5339 -8.3736 -0.5967 16 1 4.6415 -8.9810 -0.6266 17 6 6.6501 -8.7528 -1.3119 18 7 7.7769 -8.0891 -1.1727 19 14 6.5617 -10.2091 -2.4784 20 1 6.2809 -9.7252 -3.8540 21 1 7.8574 -10.9344 -2.4637 22 1 5.4765 -11.1254 -2.0448 23 6 4.1968 -6.9107 0.8938 24 6 4.2371 -5.6457 1.7570 25 6 2.1965 -1.1971 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3634 -0.8897 -0.5142 29 1 1.6551 2.1322 0.0004 30 1 4.1161 2.1408 -0.0010 31 1 5.0211 -2.5439 -0.6206 32 1 6.0400 -3.7801 -0.4941 33 1 6.7658 -4.7003 0.8489 34 1 6.8261 -6.0724 -1.1731 35 1 5.0828 -5.8208 -1.4318 36 1 6.3303 -7.1934 0.9927 37 1 8.5621 -8.3556 -1.6762 38 1 3.9685 -7.7722 1.5213 39 1 3.4284 -6.8043 0.1281 40 1 4.9402 -5.7858 2.5780 41 1 3.2438 -5.4421 2.1572 42 1 1.6560 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781546193.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:53 Heat of formation + Delta-G solvation = -15.629973 kcal Electronic energy + Delta-G solvation = -24794.092129 eV Core-core repulsion = 21199.905246 eV Total energy + Delta-G solvation = -3594.186883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.00142 -41.49497 -40.19608 -37.92319 -35.69298 -33.53066 -33.03591 -32.28990 -30.81356 -28.48855 -27.53639 -25.95816 -24.65559 -24.01833 -22.72291 -22.61371 -20.91887 -19.66226 -19.02857 -18.34253 -18.21409 -17.47499 -17.15895 -16.62419 -16.54142 -15.89757 -15.82923 -15.21952 -15.07891 -14.94393 -14.72033 -14.63155 -14.48245 -14.36368 -13.85480 -13.50992 -13.27718 -12.89722 -12.84432 -12.70136 -12.66207 -12.46502 -12.43855 -12.25194 -12.19377 -12.08187 -11.59118 -11.11894 -10.99077 -10.60738 -10.45254 -9.80392 -9.30836 -8.98349 -8.34880 -8.15990 -6.25992 -0.21002 0.24540 0.47001 0.71441 1.38201 1.41129 1.42214 1.50204 1.99543 2.40510 2.59336 3.12659 3.16056 3.66640 3.76922 3.91142 4.02576 4.09884 4.19832 4.23363 4.26722 4.37350 4.41333 4.51109 4.72527 4.77856 4.81857 4.91216 4.94585 5.00942 5.05400 5.12035 5.17005 5.20968 5.25336 5.32548 5.43317 5.55924 5.60074 5.68281 5.88494 5.92867 5.98973 6.12283 6.30849 6.82590 7.41855 8.89248 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.003168 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.687208 B = 8837.259968 C = 9316.067410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.094 4.094 3 C -0.078 4.078 4 C -0.144 4.144 5 C 0.069 3.931 6 F -0.146 7.146 7 C 0.079 3.921 8 N -0.629 5.629 9 C 0.573 3.427 10 S -0.698 6.698 11 N -0.539 5.539 12 C 0.100 3.900 13 C -0.111 4.111 14 C 0.044 3.956 15 C -0.534 4.534 16 H 0.050 0.950 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.945 3.055 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.111 4.111 24 C 0.108 3.892 25 C -0.056 4.056 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.171 0.829 30 H 0.165 0.835 31 H 0.416 0.584 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.009 0.991 37 H 0.262 0.738 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.162 19.086 -0.129 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.096 4.096 4 C -0.164 4.164 5 C 0.048 3.952 6 F -0.125 7.125 7 C -0.015 4.015 8 N -0.258 5.258 9 C 0.211 3.789 10 S -0.566 6.566 11 N -0.243 5.243 12 C -0.024 4.024 13 C -0.150 4.150 14 C 0.026 3.974 15 C -0.572 4.572 16 H 0.068 0.932 17 C -0.178 4.178 18 N -0.550 5.550 19 Si 0.771 3.229 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.149 4.149 24 C -0.014 4.014 25 C -0.079 4.079 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.188 0.812 30 H 0.182 0.818 31 H 0.259 0.741 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.706 19.049 0.488 20.950 hybrid contribution 1.883 -1.555 -1.399 2.815 sum -6.823 17.493 -0.912 18.799 Atomic orbital electron populations 1.20785 0.88780 1.03840 1.03015 1.20138 0.97979 0.91774 0.99731 1.21343 0.92631 0.98962 0.96689 1.21254 0.95450 0.96290 1.03364 1.17844 0.76570 0.93867 1.06940 1.91463 1.29357 1.97404 1.94298 1.17591 0.92194 0.82355 1.09354 1.42143 1.35769 1.12488 1.35424 1.22032 0.89642 0.82225 0.84962 1.93153 1.22469 1.88886 1.52116 1.47587 1.21213 1.12587 1.42952 1.22186 0.84628 1.00054 0.95567 1.21698 1.02577 0.92837 0.97888 1.18633 0.92059 0.92950 0.93784 1.21499 0.98483 1.08451 1.28722 0.93204 1.25586 0.95040 0.99004 0.98195 1.69965 1.01036 1.42012 1.42022 0.85741 0.77400 0.80087 0.79631 1.20376 1.21058 1.19656 1.21869 0.98873 0.95674 0.98488 1.22373 1.03621 0.82936 0.92430 1.21302 0.91285 1.00350 0.94947 0.90832 0.88855 0.91808 0.81200 0.81776 0.74140 0.89241 0.89296 0.89923 0.94598 0.97261 0.92869 0.90648 0.93438 0.89668 0.86690 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 2 C -0.09 -1.83 5.88 -19.88 -0.12 -1.95 16 3 C -0.08 -1.17 9.69 22.29 0.22 -0.95 16 4 C -0.14 -2.49 10.02 22.29 0.22 -2.27 16 5 C 0.07 1.65 7.31 22.48 0.16 1.81 16 6 F -0.15 -3.69 17.08 44.97 0.77 -2.92 16 7 C 0.08 2.13 5.90 38.16 0.23 2.35 16 8 N -0.63 -17.73 5.05 -189.80 -0.96 -18.69 16 9 C 0.57 18.81 7.58 179.05 1.36 20.16 16 10 S -0.70 -26.02 24.21 -56.49 -1.37 -27.39 16 11 N -0.54 -17.59 2.98 -707.73 -2.11 -19.70 16 12 C 0.10 3.16 6.40 86.22 0.55 3.71 16 13 C -0.11 -4.50 5.13 30.53 0.16 -4.34 16 14 C 0.04 1.98 2.03 -11.51 -0.02 1.96 16 15 C -0.53 -27.38 8.57 25.60 0.22 -27.16 16 16 H 0.05 2.57 7.75 -2.91 -0.02 2.55 16 17 C 0.02 1.09 5.21 84.65 0.44 1.53 16 18 N -0.91 -48.46 11.54 21.45 0.25 -48.21 16 19 Si 0.94 41.52 29.54 68.60 2.03 43.54 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 C -0.11 -4.21 5.30 30.67 0.16 -4.04 16 24 C 0.11 3.64 6.30 86.36 0.54 4.18 16 25 C -0.06 -1.47 7.53 22.39 0.17 -1.30 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 28 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.42 10.28 6.32 -92.71 -0.59 9.69 16 32 H 0.09 2.33 5.58 -2.39 -0.01 2.31 16 33 H 0.09 2.78 8.14 -2.39 -0.02 2.77 16 34 H 0.08 3.79 6.22 -2.39 -0.01 3.78 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.26 13.38 8.31 -92.70 -0.77 12.61 16 38 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.12 3.97 6.00 -3.22 -0.02 3.95 16 42 H 0.14 4.09 6.25 -5.54 -0.03 4.06 16 Total: -1.00 -61.73 350.30 4.05 -57.68 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.44 Total: 22.83 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.00 Total: -7.15 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -2.82 Total: -86.59 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.77 Total: -2.92 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: -26.02 SS G_CDS: -1.37 Total: -27.39 kcal Total: -61.73 4.05 -57.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781546193.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.052 kcal (2) G-P(sol) polarization free energy of solvation -61.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds