Wall clock time and date at job start Sat Apr 11 2020 00:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38276 * 119.92414 * 2 1 4 4 C 1.38138 * 120.11488 * 179.97438 * 3 2 1 5 5 C 1.38812 * 119.95461 * 0.02562 * 4 3 2 6 6 N 1.40040 * 120.07965 * 179.97438 * 5 4 3 7 7 C 1.34785 * 120.00323 * 335.20084 * 6 5 4 8 8 O 1.21292 * 119.99720 * 354.46538 * 7 6 5 9 9 C 1.50695 * 120.00178 * 174.46567 * 7 6 5 10 10 N 1.46906 * 109.47091 * 179.97438 * 9 7 6 11 11 C 1.48562 * 110.99452 * 290.12640 * 10 9 7 12 12 C 1.54384 * 104.59161 * 200.96050 * 11 10 9 13 13 C 1.54261 * 105.06157 * 23.85189 * 12 11 10 14 14 O 1.42902 * 110.32507 * 118.99937 * 13 12 11 15 15 C 1.50702 * 110.32604 * 241.10777 * 13 12 11 16 16 H 1.08000 * 120.00439 * 118.54195 * 15 13 12 17 17 C 1.37880 * 119.99787 * 298.82241 * 15 13 12 18 18 N 1.31514 * 119.99958 * 359.72133 * 17 15 13 19 19 Si 1.86792 * 120.00144 * 179.72606 * 17 15 13 20 20 H 1.48501 * 109.47290 * 59.99486 * 19 17 15 21 21 H 1.48499 * 109.47509 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46924 * 299.99574 * 19 17 15 23 23 C 1.48560 * 110.99960 * 174.70677 * 10 9 7 24 24 C 1.39048 * 119.84051 * 0.26131 * 5 4 3 25 25 F 1.35102 * 120.05451 * 179.71807 * 24 5 4 26 26 C 1.38272 * 119.92151 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47350 * 90.00251 * 1 2 3 28 28 H 1.08996 * 109.47008 * 209.99845 * 1 2 3 29 29 H 1.08997 * 109.46998 * 330.00065 * 1 2 3 30 30 H 1.08004 * 119.93930 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.02322 * 180.02562 * 4 3 2 32 32 H 0.97000 * 120.00173 * 155.19398 * 6 5 4 33 33 H 1.08993 * 109.47269 * 59.99861 * 9 7 6 34 34 H 1.08996 * 109.47031 * 299.99533 * 9 7 6 35 35 H 1.08994 * 110.41700 * 82.18076 * 11 10 9 36 36 H 1.09003 * 110.41402 * 319.73340 * 11 10 9 37 37 H 1.09002 * 110.32317 * 264.95990 * 12 11 10 38 38 H 1.08998 * 110.41074 * 142.79115 * 12 11 10 39 39 H 0.96691 * 113.99581 * 62.82867 * 14 13 12 40 40 H 0.96996 * 120.00425 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.41007 * 40.26206 * 23 10 9 42 42 H 1.08994 * 110.41204 * 277.81692 * 23 10 9 43 43 H 1.07998 * 119.97309 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5782 1.2030 0.0005 5 6 4.2753 0.0026 0.0005 6 7 5.6757 0.0042 0.0005 7 6 6.3485 1.0646 -0.4890 8 8 5.7452 1.9728 -1.0206 9 6 7.8501 1.1219 -0.3761 10 7 8.3395 2.3680 -0.9808 11 6 8.1781 2.3423 -2.4574 12 6 9.1786 3.3973 -2.9764 13 6 10.2476 3.5143 -1.8704 14 8 11.5320 3.1517 -2.3812 15 6 10.2808 4.9171 -1.3208 16 1 10.0588 5.0943 -0.2788 17 6 10.5890 5.9751 -2.1495 18 7 10.8593 5.7594 -3.4183 19 14 10.6227 7.7147 -1.4700 20 1 11.6327 7.8029 -0.3849 21 1 10.9790 8.6634 -2.5555 22 1 9.2837 8.0609 -0.9293 23 6 9.8031 2.5201 -0.7761 24 6 3.5798 -1.2014 -0.0055 25 9 4.2539 -2.3722 -0.0113 26 6 2.1967 -1.1984 0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6546 2.1325 -0.0004 31 1 4.1155 2.1399 0.0010 32 1 6.1616 -0.7577 0.3530 33 1 8.2864 0.2698 -0.8971 34 1 8.1368 1.0907 0.6751 35 1 7.1598 2.6160 -2.7334 36 1 8.4274 1.3565 -2.8500 37 1 8.6779 4.3546 -3.1217 38 1 9.6336 3.0633 -3.9089 39 1 11.8514 3.7290 -3.0880 40 1 11.0765 6.5036 -4.0013 41 1 10.3066 1.5622 -0.9057 42 1 10.0082 2.9276 0.2138 43 1 1.6550 -2.1327 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592145874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:36 Heat of formation + Delta-G solvation = -90.127086 kcal Electronic energy + Delta-G solvation = -26967.337411 eV Core-core repulsion = 22927.167220 eV Total energy + Delta-G solvation = -4040.170191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.11604 -40.61956 -38.96218 -37.93043 -35.25526 -34.67231 -32.07580 -31.99949 -30.76284 -30.36131 -28.00253 -27.30131 -25.72236 -24.10069 -23.35153 -21.93973 -20.80082 -20.15315 -19.46525 -18.24230 -17.12774 -17.07223 -17.00267 -16.28491 -15.77540 -15.38915 -15.35155 -14.78793 -14.57672 -14.47312 -14.06331 -13.86151 -13.76443 -13.65506 -13.58950 -13.01253 -12.48045 -12.35484 -12.23711 -12.14671 -12.00811 -11.75454 -11.59540 -11.34425 -11.12768 -10.89160 -10.54579 -10.52142 -10.45811 -10.31472 -9.92592 -9.65094 -9.04177 -8.98237 -8.52529 -8.16718 -8.09995 -7.89442 -6.12610 -4.18145 0.87674 1.02051 2.56404 2.76069 3.31660 3.35361 3.39439 3.42800 3.94965 4.38863 4.42267 4.47474 4.57819 4.71830 4.96018 4.98138 5.14554 5.26293 5.29398 5.31781 5.33496 5.40715 5.62518 5.70855 5.75602 5.92367 5.95575 5.99750 6.12816 6.17489 6.23041 6.32194 6.34554 6.56524 6.77421 6.86803 7.07295 7.15145 7.22757 7.50709 7.64532 7.69840 7.88704 8.09059 8.23541 8.83610 9.44859 9.53949 10.94918 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.002719 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.826829 B =10296.184864 C =11117.186273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.085 4.085 3 C -0.106 4.106 4 C -0.103 4.103 5 C 0.125 3.875 6 N -0.677 5.677 7 C 0.517 3.483 8 O -0.488 6.488 9 C 0.027 3.973 10 N -0.482 5.482 11 C 0.032 3.968 12 C -0.119 4.119 13 C 0.250 3.750 14 O -0.595 6.595 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.052 3.948 24 C 0.062 3.938 25 F -0.140 7.140 26 C -0.135 4.135 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.159 0.841 32 H 0.412 0.588 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.383 0.617 40 H 0.266 0.734 41 H 0.033 0.967 42 H 0.080 0.920 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.394 -14.113 6.824 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.125 4.125 4 C -0.123 4.123 5 C 0.028 3.972 6 N -0.323 5.323 7 C 0.304 3.696 8 O -0.359 6.359 9 C -0.105 4.105 10 N -0.206 5.206 11 C -0.095 4.095 12 C -0.158 4.158 13 C 0.210 3.790 14 O -0.405 6.405 15 C -0.557 4.557 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.075 4.075 24 C 0.041 3.959 25 F -0.119 7.119 26 C -0.154 4.154 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.176 0.824 32 H 0.248 0.752 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.234 0.766 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.007 -13.385 6.960 22.734 hybrid contribution 0.852 -0.029 -0.334 0.915 sum -16.156 -13.414 6.627 22.019 Atomic orbital electron populations 1.20766 0.90505 1.02951 1.02577 1.19729 0.96416 0.92183 1.00280 1.21063 0.93568 0.97916 0.99907 1.21456 0.94143 0.97919 0.98747 1.17822 0.83484 0.92996 1.02856 1.43584 1.03999 1.21942 1.62737 1.21005 0.90595 0.81005 0.76963 1.90676 1.69413 1.36195 1.39656 1.22149 0.90403 0.95046 1.02911 1.65209 1.15570 1.28684 1.11181 1.23258 1.01390 0.97919 0.86962 1.22847 0.96802 0.97745 0.98409 1.19222 0.80537 0.91342 0.87898 1.86062 1.36994 1.59009 1.58388 1.21587 1.46656 0.91039 0.96410 0.92006 1.25006 0.94371 0.99465 0.94740 1.69683 1.47810 1.32319 1.04287 0.86524 0.78631 0.83573 0.78490 1.20231 1.21329 1.20089 1.23043 0.85202 0.98200 1.01030 1.17371 0.90228 0.79759 1.08582 1.91467 1.80358 1.45657 1.94423 1.20784 0.91290 0.99365 1.03962 0.90950 0.91482 0.91188 0.84990 0.82371 0.75213 0.91882 0.87649 0.90266 0.95794 0.90499 0.93055 0.76600 0.92416 0.94869 0.90182 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.09 -0.77 5.88 -104.59 -0.62 -1.38 16 3 C -0.11 -1.09 9.69 -39.60 -0.38 -1.47 16 4 C -0.10 -1.30 8.72 -39.41 -0.34 -1.64 16 5 C 0.12 1.55 6.44 -83.59 -0.54 1.01 16 6 N -0.68 -8.04 5.31 -9.81 -0.05 -8.09 16 7 C 0.52 7.66 7.44 -10.98 -0.08 7.58 16 8 O -0.49 -8.94 12.01 5.55 0.07 -8.88 16 9 C 0.03 0.39 5.30 -4.98 -0.03 0.37 16 10 N -0.48 -9.48 5.06 -231.41 -1.17 -10.65 16 11 C 0.03 0.66 5.80 -2.18 -0.01 0.65 16 12 C -0.12 -2.86 5.55 -25.35 -0.14 -3.00 16 13 C 0.25 6.26 1.06 -90.39 -0.10 6.16 16 14 O -0.60 -15.46 12.95 -35.23 -0.46 -15.92 16 15 C -0.52 -14.13 8.10 -34.44 -0.28 -14.40 16 16 H 0.06 1.69 7.53 -52.49 -0.40 1.29 16 17 C 0.07 1.76 5.01 -17.82 -0.09 1.68 16 18 N -0.90 -24.46 10.80 55.43 0.60 -23.86 16 19 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.05 1.12 5.76 -2.18 -0.01 1.11 16 24 C 0.06 0.70 7.31 -39.26 -0.29 0.42 16 25 F -0.14 -1.57 16.82 2.25 0.04 -1.53 16 26 C -0.13 -1.28 9.67 -39.54 -0.38 -1.67 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.16 2.31 5.79 -52.49 -0.30 2.00 16 32 H 0.41 3.72 8.46 -40.82 -0.35 3.37 16 33 H 0.06 0.82 7.88 -51.93 -0.41 0.41 16 34 H 0.11 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.08 1.68 6.91 -51.93 -0.36 1.32 16 36 H 0.02 0.46 7.82 -51.93 -0.41 0.05 16 37 H 0.08 2.04 7.22 -51.93 -0.38 1.66 16 38 H 0.05 1.23 7.98 -51.93 -0.41 0.82 16 39 H 0.38 10.12 7.31 45.56 0.33 10.45 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.03 0.66 7.94 -51.93 -0.41 0.25 16 42 H 0.08 1.69 7.67 -51.93 -0.40 1.29 16 43 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -30.59 354.93 -8.73 -39.32 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -5.15 Total: 12.99 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.93 Total: -4.91 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.62 Total: -42.60 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.39 Total: -24.80 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.59 -8.73 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592145874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.808 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds