Wall clock time and date at job start Sat Apr 11 2020 00:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38276 * 119.92414 * 2 1 4 4 C 1.38138 * 120.11488 * 179.97438 * 3 2 1 5 5 C 1.38812 * 119.95461 * 0.02562 * 4 3 2 6 6 N 1.40040 * 120.07965 * 179.97438 * 5 4 3 7 7 C 1.34785 * 120.00323 * 335.20084 * 6 5 4 8 8 O 1.21292 * 119.99720 * 354.46538 * 7 6 5 9 9 C 1.50695 * 120.00178 * 174.46567 * 7 6 5 10 10 N 1.46906 * 109.47091 * 179.97438 * 9 7 6 11 11 C 1.48562 * 110.99452 * 290.12640 * 10 9 7 12 12 C 1.54384 * 104.59161 * 200.96050 * 11 10 9 13 13 C 1.54261 * 105.06157 * 23.85189 * 12 11 10 14 14 O 1.42902 * 110.32507 * 118.99937 * 13 12 11 15 15 C 1.50702 * 110.32604 * 241.10777 * 13 12 11 16 16 H 1.08000 * 120.00439 * 118.54195 * 15 13 12 17 17 C 1.37880 * 119.99787 * 298.82241 * 15 13 12 18 18 N 1.31514 * 119.99958 * 359.72133 * 17 15 13 19 19 Si 1.86792 * 120.00144 * 179.72606 * 17 15 13 20 20 H 1.48501 * 109.47290 * 59.99486 * 19 17 15 21 21 H 1.48499 * 109.47509 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46924 * 299.99574 * 19 17 15 23 23 C 1.48560 * 110.99960 * 174.70677 * 10 9 7 24 24 C 1.39048 * 119.84051 * 0.26131 * 5 4 3 25 25 F 1.35102 * 120.05451 * 179.71807 * 24 5 4 26 26 C 1.38272 * 119.92151 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47350 * 90.00251 * 1 2 3 28 28 H 1.08996 * 109.47008 * 209.99845 * 1 2 3 29 29 H 1.08997 * 109.46998 * 330.00065 * 1 2 3 30 30 H 1.08004 * 119.93930 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.02322 * 180.02562 * 4 3 2 32 32 H 0.97000 * 120.00173 * 155.19398 * 6 5 4 33 33 H 1.08993 * 109.47269 * 59.99861 * 9 7 6 34 34 H 1.08996 * 109.47031 * 299.99533 * 9 7 6 35 35 H 1.08994 * 110.41700 * 82.18076 * 11 10 9 36 36 H 1.09003 * 110.41402 * 319.73340 * 11 10 9 37 37 H 1.09002 * 110.32317 * 264.95990 * 12 11 10 38 38 H 1.08998 * 110.41074 * 142.79115 * 12 11 10 39 39 H 0.96691 * 113.99581 * 62.82867 * 14 13 12 40 40 H 0.96996 * 120.00425 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.41007 * 40.26206 * 23 10 9 42 42 H 1.08994 * 110.41204 * 277.81692 * 23 10 9 43 43 H 1.07998 * 119.97309 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5782 1.2030 0.0005 5 6 4.2753 0.0026 0.0005 6 7 5.6757 0.0042 0.0005 7 6 6.3485 1.0646 -0.4890 8 8 5.7452 1.9728 -1.0206 9 6 7.8501 1.1219 -0.3761 10 7 8.3395 2.3680 -0.9808 11 6 8.1781 2.3423 -2.4574 12 6 9.1786 3.3973 -2.9764 13 6 10.2476 3.5143 -1.8704 14 8 11.5320 3.1517 -2.3812 15 6 10.2808 4.9171 -1.3208 16 1 10.0588 5.0943 -0.2788 17 6 10.5890 5.9751 -2.1495 18 7 10.8593 5.7594 -3.4183 19 14 10.6227 7.7147 -1.4700 20 1 11.6327 7.8029 -0.3849 21 1 10.9790 8.6634 -2.5555 22 1 9.2837 8.0609 -0.9293 23 6 9.8031 2.5201 -0.7761 24 6 3.5798 -1.2014 -0.0055 25 9 4.2539 -2.3722 -0.0113 26 6 2.1967 -1.1984 0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6546 2.1325 -0.0004 31 1 4.1155 2.1399 0.0010 32 1 6.1616 -0.7577 0.3530 33 1 8.2864 0.2698 -0.8971 34 1 8.1368 1.0907 0.6751 35 1 7.1598 2.6160 -2.7334 36 1 8.4274 1.3565 -2.8500 37 1 8.6779 4.3546 -3.1217 38 1 9.6336 3.0633 -3.9089 39 1 11.8514 3.7290 -3.0880 40 1 11.0765 6.5036 -4.0013 41 1 10.3066 1.5622 -0.9057 42 1 10.0082 2.9276 0.2138 43 1 1.6550 -2.1327 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592145874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:35 Heat of formation + Delta-G solvation = -112.123597 kcal Electronic energy + Delta-G solvation = -26968.291251 eV Core-core repulsion = 22927.167220 eV Total energy + Delta-G solvation = -4041.124032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.96885 -41.68661 -40.17414 -39.33160 -36.65401 -36.08449 -34.14393 -32.95381 -31.81720 -31.56940 -29.77250 -28.51080 -27.01690 -25.77274 -24.22666 -22.93248 -22.15906 -21.44258 -21.25245 -19.22767 -19.02578 -18.19792 -17.89279 -17.25564 -16.97940 -16.81921 -16.66978 -16.49210 -15.98537 -15.68113 -15.40704 -15.04469 -14.89384 -14.61015 -14.41513 -14.26084 -14.05832 -13.94753 -13.50103 -13.27865 -13.06096 -12.98751 -12.93286 -12.68580 -12.63637 -12.44112 -12.36199 -12.27670 -12.09972 -11.89521 -11.43700 -11.04714 -10.73927 -10.57725 -10.12398 -9.86538 -9.40091 -9.02132 -8.18220 -6.30598 0.02812 0.19248 1.42151 1.43393 1.48832 1.50779 1.74853 2.41647 2.59312 2.97062 3.11645 3.15316 3.52797 3.72129 3.90578 3.92817 4.11992 4.20443 4.25337 4.27207 4.28998 4.37769 4.45787 4.51544 4.61874 4.68931 4.81606 4.89266 4.95767 5.03754 5.06165 5.09136 5.25337 5.29482 5.35165 5.40209 5.55678 5.64703 5.76527 5.89967 5.93328 6.00226 6.19966 6.32665 6.73791 7.02629 7.36662 7.44458 8.87486 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.002719 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.826829 B =10296.184864 C =11117.186273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.078 4.078 3 C -0.110 4.110 4 C -0.122 4.122 5 C 0.102 3.898 6 N -0.662 5.662 7 C 0.519 3.481 8 O -0.531 6.531 9 C 0.026 3.974 10 N -0.499 5.499 11 C 0.046 3.954 12 C -0.112 4.112 13 C 0.232 3.768 14 O -0.599 6.599 15 C -0.541 4.541 16 H 0.053 0.947 17 C 0.023 3.977 18 N -0.916 5.916 19 Si 0.957 3.043 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.277 1.277 23 C 0.063 3.937 24 C 0.057 3.943 25 F -0.141 7.141 26 C -0.133 4.133 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.426 0.574 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.377 0.623 40 H 0.267 0.733 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.974 -15.743 7.932 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.129 4.129 4 C -0.142 4.142 5 C 0.006 3.994 6 N -0.309 5.309 7 C 0.307 3.693 8 O -0.406 6.406 9 C -0.105 4.105 10 N -0.224 5.224 11 C -0.081 4.081 12 C -0.151 4.151 13 C 0.192 3.808 14 O -0.407 6.407 15 C -0.580 4.580 16 H 0.071 0.929 17 C -0.176 4.176 18 N -0.556 5.556 19 Si 0.783 3.217 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.203 1.203 23 C -0.064 4.064 24 C 0.035 3.965 25 F -0.119 7.119 26 C -0.152 4.152 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.165 0.835 31 H 0.151 0.849 32 H 0.264 0.736 33 H 0.108 0.892 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.227 0.773 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.594 -15.065 8.096 25.263 hybrid contribution 1.248 0.432 -0.666 1.479 sum -17.346 -14.634 7.430 23.880 Atomic orbital electron populations 1.20852 0.88002 1.04326 1.03526 1.20096 0.98128 0.91376 0.98271 1.21301 0.92774 0.99408 0.99417 1.21357 0.95274 0.97177 1.00428 1.17948 0.83531 0.93510 1.04402 1.43337 1.04103 1.21547 1.61873 1.21016 0.90681 0.81037 0.76562 1.90677 1.70128 1.37915 1.41849 1.22272 0.90187 0.93556 1.04450 1.65061 1.14499 1.32376 1.10455 1.23031 0.99648 0.97538 0.87918 1.22633 0.97209 0.97148 0.98100 1.19484 0.80220 0.91836 0.89230 1.86053 1.37712 1.58787 1.58189 1.21847 1.47221 0.92695 0.96196 0.92856 1.25689 0.94094 1.02774 0.95089 1.69768 1.47836 1.33118 1.04910 0.85626 0.78399 0.79600 0.78051 1.19658 1.20692 1.20305 1.22852 0.86280 0.97837 0.99443 1.17492 0.90909 0.79263 1.08787 1.91465 1.80514 1.45498 1.94463 1.21149 0.90668 1.00706 1.02650 0.90045 0.89824 0.90210 0.83495 0.84876 0.73579 0.89229 0.84788 0.91180 0.93828 0.94004 0.93916 0.77319 0.92364 0.93257 0.90206 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 71.24 0.71 -0.27 16 2 C -0.08 -1.22 5.88 -19.85 -0.12 -1.34 16 3 C -0.11 -2.16 9.69 22.26 0.22 -1.95 16 4 C -0.12 -3.12 8.72 22.38 0.20 -2.93 16 5 C 0.10 2.47 6.44 38.16 0.25 2.72 16 6 N -0.66 -15.06 5.31 -303.32 -1.61 -16.67 16 7 C 0.52 15.04 7.44 87.65 0.65 15.69 16 8 O -0.53 -19.85 12.01 -3.07 -0.04 -19.89 16 9 C 0.03 0.72 5.30 85.55 0.45 1.17 16 10 N -0.50 -19.27 5.06 -886.05 -4.49 -23.76 16 11 C 0.05 1.91 5.80 86.45 0.50 2.41 16 12 C -0.11 -5.51 5.55 31.49 0.17 -5.33 16 13 C 0.23 11.74 1.06 -10.64 -0.01 11.73 16 14 O -0.60 -31.41 12.95 -148.98 -1.93 -33.34 16 15 C -0.54 -29.99 8.10 25.60 0.21 -29.78 16 16 H 0.05 2.96 7.53 -2.91 -0.02 2.94 16 17 C 0.02 1.26 5.01 84.66 0.42 1.68 16 18 N -0.92 -50.69 10.80 21.45 0.23 -50.46 16 19 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 23 C 0.06 2.64 5.76 86.45 0.50 3.14 16 24 C 0.06 1.20 7.31 22.48 0.16 1.36 16 25 F -0.14 -2.88 16.82 44.97 0.76 -2.12 16 26 C -0.13 -2.19 9.67 22.29 0.22 -1.98 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 29 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 30 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.13 4.10 5.79 -2.91 -0.02 4.09 16 32 H 0.43 6.93 8.46 -92.71 -0.78 6.14 16 33 H 0.09 2.03 7.88 -2.39 -0.02 2.01 16 34 H 0.13 2.88 8.13 -2.39 -0.02 2.86 16 35 H 0.07 3.02 6.91 -2.39 -0.02 3.01 16 36 H 0.04 1.61 7.82 -2.39 -0.02 1.59 16 37 H 0.04 2.30 7.22 -2.39 -0.02 2.28 16 38 H 0.04 2.10 7.98 -2.39 -0.02 2.08 16 39 H 0.38 20.37 7.31 -74.06 -0.54 19.83 16 40 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.05 1.88 7.94 -2.39 -0.02 1.86 16 42 H 0.08 3.30 7.67 -2.39 -0.02 3.28 16 43 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -67.40 354.93 -0.78 -68.18 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: -0.27 Total: 35.72 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 4.53 Total: -3.66 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -5.86 Total: -90.88 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -1.97 Total: -53.22 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.76 Total: -2.12 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.40 -0.78 -68.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592145874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.940 kcal (2) G-P(sol) polarization free energy of solvation -67.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds