Wall clock time and date at job start Sat Apr 11 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47147 * 240.00115 * 3 2 1 5 5 H 1.48503 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47013 * 119.99984 * 3 2 1 7 7 C 1.37874 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00204 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.27920 * 302.09226 * 9 7 2 11 11 C 1.54600 * 110.30848 * 64.28676 * 9 7 2 12 12 C 1.54936 * 102.92374 * 140.86983 * 11 9 7 13 13 N 1.48527 * 103.22941 * 322.58581 * 12 11 9 14 14 C 1.46903 * 111.00296 * 159.71672 * 13 12 11 15 15 C 1.52998 * 109.46554 * 52.60431 * 14 13 12 16 16 C 1.50704 * 109.47186 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99764 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00328 * 179.97438 * 16 15 14 19 19 C 1.40044 * 119.99966 * 175.54973 * 18 16 15 20 20 C 1.38816 * 120.07795 * 34.63395 * 19 18 16 21 21 C 1.38141 * 119.95349 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.11231 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.15753 * 359.97438 * 22 21 20 24 24 C 1.38307 * 120.04228 * 359.74236 * 23 22 21 25 25 F 1.35102 * 120.05456 * 180.27583 * 24 23 22 26 26 C 1.47905 * 105.82155 * 39.20591 * 13 12 11 27 27 H 0.96996 * 119.99577 * 359.97438 * 1 2 3 28 28 H 0.96698 * 113.99908 * 57.90158 * 10 9 7 29 29 H 1.09000 * 110.72321 * 259.23056 * 11 9 7 30 30 H 1.09002 * 110.72366 * 22.33303 * 11 9 7 31 31 H 1.08999 * 110.66898 * 204.14950 * 12 11 9 32 32 H 1.09007 * 110.66592 * 81.02458 * 12 11 9 33 33 H 1.09001 * 109.47034 * 292.60661 * 14 13 12 34 34 H 1.08997 * 109.47182 * 172.60012 * 14 13 12 35 35 H 1.09001 * 109.47262 * 60.00370 * 15 14 13 36 36 H 1.09000 * 109.47694 * 299.99986 * 15 14 13 37 37 H 0.96997 * 119.99736 * 355.55185 * 18 16 15 38 38 H 1.07994 * 120.02182 * 359.97438 * 20 19 18 39 39 H 1.07993 * 119.94552 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.92134 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.97897 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.91670 * 94.01850 * 26 13 12 43 43 H 1.08998 * 109.91765 * 215.31782 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 0.3871 -2.5712 1.1377 11 6 0.4374 -2.6501 -1.3042 12 6 0.6020 -4.1529 -1.6432 13 7 2.0054 -4.4385 -1.2494 14 6 2.2114 -5.8780 -1.0415 15 6 1.7290 -6.6454 -2.2742 16 6 1.9409 -8.1222 -2.0613 17 8 2.4293 -8.5216 -1.0254 18 7 1.5868 -8.9991 -3.0215 19 6 1.8684 -10.3618 -2.8637 20 6 1.8186 -10.9411 -1.6031 21 6 2.0964 -12.2856 -1.4505 22 6 2.4246 -13.0556 -2.5512 23 6 2.4756 -12.4834 -3.8089 24 6 2.1929 -11.1391 -3.9700 25 9 2.2372 -10.5810 -5.1996 26 6 2.2345 -3.6842 0.0020 27 1 -0.4849 0.8400 0.0004 28 1 -0.2546 -1.8496 1.1902 29 1 -0.6113 -2.4053 -1.1358 30 1 0.8558 -2.0257 -2.0937 31 1 0.4594 -4.3245 -2.7101 32 1 -0.0921 -4.7574 -1.0592 33 1 1.6474 -6.2033 -0.1673 34 1 3.2719 -6.0742 -0.8835 35 1 2.2930 -6.3201 -3.1484 36 1 0.6685 -6.4492 -2.4323 37 1 1.1369 -8.6863 -3.8219 38 1 1.5629 -10.3410 -0.7425 39 1 2.0572 -12.7362 -0.4698 40 1 2.6416 -14.1064 -2.4283 41 1 2.7326 -13.0874 -4.6666 42 1 2.0428 -4.3254 0.8624 43 1 3.2599 -3.3157 0.0311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:44 Heat of formation + Delta-G solvation = -96.327997 kcal Electronic energy + Delta-G solvation = -26526.580831 eV Core-core repulsion = 22486.141748 eV Total energy + Delta-G solvation = -4040.439083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.22468 -40.73838 -38.86451 -38.23539 -35.24539 -34.98018 -32.06521 -32.03995 -30.91454 -29.98629 -28.55564 -27.76510 -24.81586 -23.83760 -23.10016 -22.35973 -20.83557 -19.86090 -19.39937 -18.45419 -17.42758 -17.35083 -17.07911 -16.48406 -15.89290 -15.72550 -15.22501 -15.06523 -14.90787 -14.62275 -14.28899 -14.09695 -13.80486 -13.64552 -13.29075 -12.85082 -12.61873 -12.32022 -12.24668 -12.13302 -11.93734 -11.86546 -11.32974 -11.08738 -10.91683 -10.79752 -10.74307 -10.57599 -10.49052 -10.29885 -10.03044 -9.90617 -9.17871 -9.15591 -8.57125 -8.51353 -8.10163 -7.81650 -6.18744 -4.24641 0.73604 0.87566 2.33603 2.65608 3.26948 3.29548 3.31163 3.34851 3.84379 4.29663 4.34420 4.40812 4.60628 4.77460 4.87434 4.95569 5.01860 5.10450 5.14925 5.22467 5.56221 5.62689 5.68895 5.74924 5.83581 5.87965 6.01068 6.04425 6.07591 6.12540 6.20730 6.25757 6.45878 6.47590 6.59830 6.93402 6.98561 7.04826 7.27582 7.51847 7.63336 7.68500 7.83300 7.86204 8.17560 8.76751 9.42330 9.54358 10.88957 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034694 B = 0.002169 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.858058 B =12903.822679 C =13190.448297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.243 3.757 10 O -0.595 6.595 11 C -0.118 4.118 12 C 0.027 3.973 13 N -0.515 5.515 14 C 0.063 3.937 15 C -0.137 4.137 16 C 0.520 3.480 17 O -0.516 6.516 18 N -0.676 5.676 19 C 0.120 3.880 20 C -0.097 4.097 21 C -0.110 4.110 22 C -0.110 4.110 23 C -0.137 4.137 24 C 0.068 3.932 25 F -0.138 7.138 26 C 0.055 3.945 27 H 0.267 0.733 28 H 0.384 0.616 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.415 0.585 38 H 0.150 0.850 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.038 0.962 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -22.762 -8.370 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.203 3.797 10 O -0.405 6.405 11 C -0.157 4.157 12 C -0.101 4.101 13 N -0.240 5.240 14 C -0.066 4.066 15 C -0.177 4.177 16 C 0.309 3.691 17 O -0.390 6.390 18 N -0.322 5.322 19 C 0.024 3.976 20 C -0.117 4.117 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.156 4.156 24 C 0.046 3.954 25 F -0.117 7.117 26 C -0.073 4.073 27 H 0.077 0.923 28 H 0.235 0.765 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.251 0.749 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.056 0.944 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.646 -23.177 -7.936 24.554 hybrid contribution -0.657 1.370 -0.310 1.551 sum 0.988 -21.807 -8.247 23.335 Atomic orbital electron populations 1.69612 1.05938 1.27497 1.51102 1.25018 0.95013 0.99463 0.93919 0.86511 0.79539 0.82327 0.78773 1.20105 1.21251 1.20141 1.21670 0.93532 0.90599 1.50767 0.91993 1.19354 0.86248 0.91560 0.82562 1.86088 1.52026 1.53918 1.48470 1.22979 1.00804 0.91421 1.00509 1.23342 0.88646 0.99197 0.98908 1.64885 1.23192 1.05126 1.30750 1.21989 1.01755 0.88511 0.94385 1.21750 1.04486 0.88901 1.02604 1.21126 0.76366 0.88982 0.82666 1.90702 1.42183 1.80021 1.26138 1.43562 1.60022 1.04618 1.24013 1.17822 1.02073 0.83998 0.93694 1.21328 0.98997 0.94999 0.96388 1.21183 0.99029 0.93296 0.99376 1.21026 0.99956 1.00376 0.91554 1.20998 1.02640 0.92645 0.99317 1.17524 1.06032 0.92494 0.79365 1.91488 1.94321 1.85629 1.40229 1.22877 1.00645 0.95028 0.88719 0.92309 0.76502 0.91737 0.91338 0.91655 0.94817 0.94139 0.90305 0.87476 0.88229 0.74889 0.83198 0.84905 0.84923 0.84431 0.94368 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 10.88 55.43 0.60 -23.43 16 2 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.20 8.10 -34.44 -0.28 -14.48 16 8 H 0.06 1.66 7.34 -52.48 -0.39 1.28 16 9 C 0.24 6.05 0.99 -90.41 -0.09 5.96 16 10 O -0.60 -15.66 12.93 -35.23 -0.46 -16.12 16 11 C -0.12 -2.70 5.50 -24.87 -0.14 -2.83 16 12 C 0.03 0.49 5.10 -1.90 -0.01 0.48 16 13 N -0.51 -9.74 5.40 -230.45 -1.24 -10.99 16 14 C 0.06 1.00 4.32 -3.82 -0.02 0.98 16 15 C -0.14 -1.65 5.36 -27.88 -0.15 -1.80 16 16 C 0.52 6.47 7.68 -10.98 -0.08 6.39 16 17 O -0.52 -8.01 13.40 5.54 0.07 -7.93 16 18 N -0.68 -6.91 5.23 -9.80 -0.05 -6.96 16 19 C 0.12 1.29 6.32 -83.59 -0.53 0.76 16 20 C -0.10 -1.03 8.70 -39.40 -0.34 -1.38 16 21 C -0.11 -0.90 10.04 -39.60 -0.40 -1.30 16 22 C -0.11 -0.78 10.04 -39.55 -0.40 -1.17 16 23 C -0.14 -1.08 10.02 -39.54 -0.40 -1.48 16 24 C 0.07 0.67 7.31 -39.25 -0.29 0.38 16 25 F -0.14 -1.41 16.95 2.25 0.04 -1.37 16 26 C 0.05 1.21 6.17 -2.75 -0.02 1.19 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.38 10.22 7.05 45.56 0.32 10.54 16 29 H 0.06 1.52 8.06 -51.93 -0.42 1.10 16 30 H 0.07 1.65 7.86 -51.93 -0.41 1.24 16 31 H 0.07 1.04 7.66 -51.93 -0.40 0.64 16 32 H 0.03 0.62 8.00 -51.93 -0.42 0.20 16 33 H 0.04 0.70 7.77 -51.93 -0.40 0.30 16 34 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.10 1.08 6.79 -51.93 -0.35 0.72 16 37 H 0.41 3.18 8.66 -40.82 -0.35 2.82 16 38 H 0.15 1.80 6.19 -52.49 -0.33 1.47 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.04 0.85 7.39 -51.93 -0.38 0.47 16 43 H 0.08 1.78 7.39 -51.93 -0.38 1.40 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -30.07 355.43 -9.08 -39.15 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -5.15 Total: 13.13 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.22 Total: -6.60 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.69 Total: -41.38 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.38 Total: -24.05 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.07 -9.08 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.182 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds