Wall clock time and date at job start Sat Apr 11 2020 00:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 120.00172 * 2 1 4 4 H 1.48495 * 109.47147 * 240.00115 * 3 2 1 5 5 H 1.48503 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47013 * 119.99984 * 3 2 1 7 7 C 1.37874 * 119.99613 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00204 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.27920 * 302.09226 * 9 7 2 11 11 C 1.54600 * 110.30848 * 64.28676 * 9 7 2 12 12 C 1.54936 * 102.92374 * 140.86983 * 11 9 7 13 13 N 1.48527 * 103.22941 * 322.58581 * 12 11 9 14 14 C 1.46903 * 111.00296 * 159.71672 * 13 12 11 15 15 C 1.52998 * 109.46554 * 52.60431 * 14 13 12 16 16 C 1.50704 * 109.47186 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99764 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00328 * 179.97438 * 16 15 14 19 19 C 1.40044 * 119.99966 * 175.54973 * 18 16 15 20 20 C 1.38816 * 120.07795 * 34.63395 * 19 18 16 21 21 C 1.38141 * 119.95349 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.11231 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.15753 * 359.97438 * 22 21 20 24 24 C 1.38307 * 120.04228 * 359.74236 * 23 22 21 25 25 F 1.35102 * 120.05456 * 180.27583 * 24 23 22 26 26 C 1.47905 * 105.82155 * 39.20591 * 13 12 11 27 27 H 0.96996 * 119.99577 * 359.97438 * 1 2 3 28 28 H 0.96698 * 113.99908 * 57.90158 * 10 9 7 29 29 H 1.09000 * 110.72321 * 259.23056 * 11 9 7 30 30 H 1.09002 * 110.72366 * 22.33303 * 11 9 7 31 31 H 1.08999 * 110.66898 * 204.14950 * 12 11 9 32 32 H 1.09007 * 110.66592 * 81.02458 * 12 11 9 33 33 H 1.09001 * 109.47034 * 292.60661 * 14 13 12 34 34 H 1.08997 * 109.47182 * 172.60012 * 14 13 12 35 35 H 1.09001 * 109.47262 * 60.00370 * 15 14 13 36 36 H 1.09000 * 109.47694 * 299.99986 * 15 14 13 37 37 H 0.96997 * 119.99736 * 355.55185 * 18 16 15 38 38 H 1.07994 * 120.02182 * 359.97438 * 20 19 18 39 39 H 1.07993 * 119.94552 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.92134 * 179.97438 * 22 21 20 41 41 H 1.08001 * 119.97897 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.91670 * 94.01850 * 26 13 12 43 43 H 1.08998 * 109.91765 * 215.31782 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 0.3871 -2.5712 1.1377 11 6 0.4374 -2.6501 -1.3042 12 6 0.6020 -4.1529 -1.6432 13 7 2.0054 -4.4385 -1.2494 14 6 2.2114 -5.8780 -1.0415 15 6 1.7290 -6.6454 -2.2742 16 6 1.9409 -8.1222 -2.0613 17 8 2.4293 -8.5216 -1.0254 18 7 1.5868 -8.9991 -3.0215 19 6 1.8684 -10.3618 -2.8637 20 6 1.8186 -10.9411 -1.6031 21 6 2.0964 -12.2856 -1.4505 22 6 2.4246 -13.0556 -2.5512 23 6 2.4756 -12.4834 -3.8089 24 6 2.1929 -11.1391 -3.9700 25 9 2.2372 -10.5810 -5.1996 26 6 2.2345 -3.6842 0.0020 27 1 -0.4849 0.8400 0.0004 28 1 -0.2546 -1.8496 1.1902 29 1 -0.6113 -2.4053 -1.1358 30 1 0.8558 -2.0257 -2.0937 31 1 0.4594 -4.3245 -2.7101 32 1 -0.0921 -4.7574 -1.0592 33 1 1.6474 -6.2033 -0.1673 34 1 3.2719 -6.0742 -0.8835 35 1 2.2930 -6.3201 -3.1484 36 1 0.6685 -6.4492 -2.4323 37 1 1.1369 -8.6863 -3.8219 38 1 1.5629 -10.3410 -0.7425 39 1 2.0572 -12.7362 -0.4698 40 1 2.6416 -14.1064 -2.4283 41 1 2.7326 -13.0874 -4.6666 42 1 2.0428 -4.3254 0.8624 43 1 3.2599 -3.3157 0.0311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146311.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:44 Heat of formation + Delta-G solvation = -117.962142 kcal Electronic energy + Delta-G solvation = -26527.518958 eV Core-core repulsion = 22486.141748 eV Total energy + Delta-G solvation = -4041.377210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.95741 -41.63958 -40.19008 -39.35924 -36.89348 -35.95826 -34.12413 -33.41113 -31.61173 -31.00676 -30.03211 -29.39851 -26.52785 -25.01338 -24.02491 -23.29638 -21.99979 -21.30721 -21.06152 -19.26799 -19.10042 -18.29732 -18.13454 -17.31982 -16.94918 -16.82274 -16.67132 -16.48879 -16.16390 -15.87981 -15.69801 -15.22333 -15.11431 -14.76704 -14.20829 -14.08847 -13.96180 -13.82447 -13.62792 -13.42308 -13.22198 -12.86864 -12.82955 -12.60970 -12.51900 -12.41087 -12.29820 -12.03811 -12.03055 -11.84769 -11.57796 -11.09557 -10.95700 -10.60057 -10.09390 -9.86147 -9.38342 -9.25063 -8.20888 -6.34251 0.04247 0.20343 1.41917 1.42780 1.43483 1.51319 1.81510 2.40128 2.62928 2.97229 3.11075 3.15514 3.62403 3.75897 3.80525 3.96223 4.03733 4.08749 4.26448 4.32060 4.34302 4.37481 4.45781 4.52561 4.55579 4.59901 4.83522 4.85510 4.94315 5.01177 5.06543 5.10858 5.21245 5.25686 5.33664 5.42175 5.46897 5.62642 5.77412 5.91818 5.94668 6.12145 6.19672 6.20614 6.69528 6.94683 7.35445 7.45675 8.85048 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034694 B = 0.002169 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.858058 B =12903.822679 C =13190.448297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.554 4.554 8 H 0.053 0.947 9 C 0.224 3.776 10 O -0.604 6.604 11 C -0.112 4.112 12 C 0.037 3.963 13 N -0.512 5.512 14 C 0.066 3.934 15 C -0.127 4.127 16 C 0.523 3.477 17 O -0.554 6.554 18 N -0.665 5.665 19 C 0.097 3.903 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.100 4.100 23 C -0.135 4.135 24 C 0.055 3.945 25 F -0.143 7.143 26 C 0.060 3.940 27 H 0.269 0.731 28 H 0.378 0.622 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.038 0.962 33 H 0.025 0.975 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.426 0.574 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.168 0.832 41 H 0.162 0.838 42 H 0.030 0.970 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 -24.517 -10.031 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.592 4.592 8 H 0.071 0.929 9 C 0.185 3.815 10 O -0.414 6.414 11 C -0.151 4.151 12 C -0.090 4.090 13 N -0.237 5.237 14 C -0.063 4.063 15 C -0.166 4.166 16 C 0.312 3.688 17 O -0.431 6.431 18 N -0.311 5.311 19 C 0.001 3.999 20 C -0.138 4.138 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.153 4.153 24 C 0.034 3.966 25 F -0.121 7.121 26 C -0.068 4.068 27 H 0.079 0.921 28 H 0.229 0.771 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.265 0.735 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.185 0.815 41 H 0.180 0.820 42 H 0.048 0.952 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.884 -24.957 -9.636 26.819 hybrid contribution -0.734 1.824 0.228 1.979 sum 1.150 -23.133 -9.409 25.000 Atomic orbital electron populations 1.69690 1.06744 1.28214 1.50851 1.25692 0.95883 1.02233 0.93469 0.85586 0.78434 0.78791 0.78639 1.19682 1.20522 1.20197 1.21919 0.93400 0.92105 1.51792 0.92876 1.19649 0.86805 0.92055 0.83023 1.86083 1.52127 1.53625 1.49549 1.22760 0.99217 0.94267 0.98823 1.23320 0.88423 0.96010 1.01234 1.64869 1.23430 1.06676 1.28709 1.21945 1.01455 0.86930 0.95962 1.21640 1.05767 0.88111 1.01105 1.21114 0.75946 0.89297 0.82472 1.90698 1.44142 1.80556 1.27693 1.43380 1.59396 1.04489 1.23838 1.17996 1.03492 0.84135 0.94246 1.21313 1.00528 0.96158 0.95822 1.21479 0.98110 0.92419 1.00965 1.21429 0.98025 1.01818 0.90590 1.21380 1.01359 0.91962 1.00644 1.17711 1.06747 0.93286 0.78899 1.91473 1.94446 1.85848 1.40364 1.22714 0.99512 0.94466 0.90106 0.92117 0.77128 0.93167 0.93025 0.87863 0.94333 0.95658 0.90835 0.85463 0.86345 0.73489 0.85253 0.82980 0.81483 0.81995 0.95173 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.20 10.88 21.45 0.23 -48.97 16 2 C 0.03 1.45 5.26 84.65 0.45 1.89 16 3 Si 0.96 42.72 29.54 68.60 2.03 44.74 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.55 -30.36 8.10 25.60 0.21 -30.16 16 8 H 0.05 2.92 7.34 -2.91 -0.02 2.90 16 9 C 0.22 11.39 0.99 -10.66 -0.01 11.38 16 10 O -0.60 -32.60 12.93 -148.98 -1.93 -34.53 16 11 C -0.11 -5.11 5.50 31.80 0.17 -4.93 16 12 C 0.04 1.33 5.10 86.65 0.44 1.77 16 13 N -0.51 -18.99 5.40 -883.00 -4.76 -23.76 16 14 C 0.07 2.06 4.32 86.30 0.37 2.43 16 15 C -0.13 -2.81 5.36 29.85 0.16 -2.65 16 16 C 0.52 12.66 7.68 87.66 0.67 13.33 16 17 O -0.55 -17.45 13.40 -3.08 -0.04 -17.49 16 18 N -0.66 -12.97 5.23 -303.31 -1.59 -14.56 16 19 C 0.10 2.02 6.32 38.16 0.24 2.26 16 20 C -0.12 -2.49 8.70 22.39 0.19 -2.29 16 21 C -0.11 -1.64 10.04 22.26 0.22 -1.41 16 22 C -0.10 -1.10 10.04 22.29 0.22 -0.88 16 23 C -0.13 -1.76 10.02 22.29 0.22 -1.53 16 24 C 0.06 1.00 7.31 22.48 0.16 1.17 16 25 F -0.14 -2.69 16.95 44.97 0.76 -1.93 16 26 C 0.06 2.70 6.17 86.45 0.53 3.23 16 27 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.38 20.74 7.05 -74.06 -0.52 20.22 16 29 H 0.05 2.39 8.06 -2.39 -0.02 2.37 16 30 H 0.05 2.49 7.86 -2.39 -0.02 2.47 16 31 H 0.10 2.93 7.66 -2.39 -0.02 2.92 16 32 H 0.04 1.35 8.00 -2.38 -0.02 1.33 16 33 H 0.03 0.88 7.77 -2.39 -0.02 0.86 16 34 H 0.07 2.38 8.10 -2.39 -0.02 2.36 16 35 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.12 2.21 6.79 -2.39 -0.02 2.19 16 37 H 0.43 5.88 8.66 -92.71 -0.80 5.08 16 38 H 0.13 3.24 6.19 -2.91 -0.02 3.22 16 39 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.03 1.38 7.39 -2.39 -0.02 1.36 16 43 H 0.07 3.31 7.39 -2.39 -0.02 3.29 16 Total: -1.00 -66.22 355.43 -1.30 -67.52 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -0.27 Total: 35.35 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.27 Total: -6.39 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -6.12 Total: -87.28 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -1.97 Total: -52.01 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.76 Total: -1.93 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -66.22 -1.30 -67.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146311.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.446 kcal (2) G-P(sol) polarization free energy of solvation -66.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds