Wall clock time and date at job start Sat Apr 11 2020 00:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48497 * 109.46922 * 269.99711 * 3 2 1 5 5 H 1.48502 * 109.47122 * 29.99637 * 3 2 1 6 6 H 1.48500 * 109.47034 * 149.99413 * 3 2 1 7 7 C 1.37878 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00265 * 0.28107 * 7 2 1 10 10 O 1.42903 * 110.27287 * 59.01839 * 9 7 2 11 11 C 1.54598 * 110.30558 * 296.93360 * 9 7 2 12 12 C 1.55100 * 102.84750 * 219.18215 * 11 9 7 13 13 N 1.48535 * 103.28151 * 37.30578 * 12 11 9 14 14 C 1.46898 * 111.00256 * 200.33494 * 13 12 11 15 15 C 1.53004 * 109.47126 * 287.39586 * 14 13 12 16 16 C 1.50699 * 109.47033 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00390 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99548 * 179.97438 * 16 15 14 19 19 C 1.39923 * 119.99502 * 175.38133 * 18 16 15 20 20 C 1.38906 * 120.05966 * 35.09180 * 19 18 16 21 21 C 1.38103 * 119.97749 * 179.97438 * 20 19 18 22 22 C 1.38259 * 120.10022 * 0.02562 * 21 20 19 23 23 C 1.38494 * 120.11294 * 359.97438 * 22 21 20 24 24 F 1.35108 * 119.98955 * 180.02562 * 23 22 21 25 25 C 1.38356 * 120.01785 * 359.72461 * 23 22 21 26 26 C 1.47903 * 105.82049 * 320.85018 * 13 12 11 27 27 H 0.96996 * 120.00142 * 0.02562 * 1 2 3 28 28 H 0.96702 * 114.00050 * 300.70249 * 10 9 7 29 29 H 1.08997 * 110.72627 * 337.48100 * 11 9 7 30 30 H 1.08998 * 110.72731 * 100.76677 * 11 9 7 31 31 H 1.09003 * 110.59238 * 278.87808 * 12 11 9 32 32 H 1.08994 * 110.83308 * 155.84712 * 12 11 9 33 33 H 1.09001 * 109.46953 * 47.39245 * 14 13 12 34 34 H 1.08997 * 109.47634 * 167.39513 * 14 13 12 35 35 H 1.08994 * 109.47064 * 300.00028 * 15 14 13 36 36 H 1.09006 * 109.46761 * 59.99690 * 15 14 13 37 37 H 0.96998 * 120.00652 * 355.38434 * 18 16 15 38 38 H 1.07999 * 120.01212 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.94970 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.94741 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.04881 * 180.29971 * 25 23 22 42 42 H 1.09008 * 109.91693 * 265.97821 * 26 13 12 43 43 H 1.08999 * 110.08562 * 144.77768 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0053 10 8 0.4108 -2.5807 -1.1583 11 6 0.4086 -2.6381 1.2835 12 6 0.5679 -4.1392 1.6396 13 7 1.9791 -4.4279 1.2773 14 6 2.1893 -5.8691 1.0858 15 6 2.1625 -6.5733 2.4439 16 6 2.3774 -8.0519 2.2473 17 8 2.5368 -8.4985 1.1310 18 7 2.3936 -8.8779 3.3122 19 6 2.4961 -10.2605 3.1236 20 6 3.2642 -10.7656 2.0822 21 6 3.3647 -12.1306 1.8979 22 6 2.7014 -12.9958 2.7482 23 6 1.9345 -12.4965 3.7878 24 9 1.2878 -13.3442 4.6176 25 6 1.8355 -11.1300 3.9806 26 6 2.2341 -3.6841 0.0246 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2437 -1.8714 -1.2190 29 1 0.8112 -2.0088 2.0772 30 1 -0.6361 -2.3949 1.0896 31 1 -0.1140 -4.7485 1.0463 32 1 0.4025 -4.3047 2.7042 33 1 1.3980 -6.2707 0.4527 34 1 3.1554 -6.0354 0.6093 35 1 2.9537 -6.1718 3.0769 36 1 1.1963 -6.4071 2.9203 37 1 2.3340 -8.5139 4.2094 38 1 3.7826 -10.0911 1.4169 39 1 3.9623 -12.5228 1.0883 40 1 2.7820 -14.0628 2.6021 41 1 1.2416 -10.7403 4.7941 42 1 2.0603 -4.3324 -0.8343 43 1 3.2599 -3.3159 0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:53 Heat of formation + Delta-G solvation = -97.896077 kcal Electronic energy + Delta-G solvation = -26223.280561 eV Core-core repulsion = 22182.773481 eV Total energy + Delta-G solvation = -4040.507080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.21882 -40.83887 -38.82478 -38.20463 -35.18361 -34.95850 -32.08483 -32.07447 -31.00780 -29.96761 -28.47623 -27.85685 -24.84350 -23.69599 -23.26592 -22.29627 -20.73897 -20.05180 -19.42033 -18.46994 -17.57210 -17.07712 -16.71391 -16.41836 -15.90354 -15.85863 -15.68291 -15.05434 -14.89958 -14.53432 -14.24173 -14.14603 -13.86590 -13.64188 -13.37532 -12.82732 -12.61308 -12.35940 -12.31120 -12.15268 -11.93282 -11.71894 -11.37349 -11.16476 -10.97030 -10.79005 -10.71578 -10.51019 -10.44507 -10.30186 -10.06646 -9.91644 -9.19252 -9.15576 -8.58367 -8.56293 -8.11212 -7.85014 -6.19363 -4.25397 0.76656 0.84811 2.31859 2.62403 3.24213 3.29634 3.31235 3.34982 3.95930 4.28208 4.33525 4.43658 4.62489 4.73156 4.81180 4.98184 5.03293 5.07384 5.11443 5.23725 5.56372 5.61521 5.68375 5.73531 5.81477 5.88051 6.00460 6.05080 6.06791 6.11323 6.17695 6.22932 6.46128 6.46608 6.60430 6.92511 6.99598 7.03864 7.27111 7.51420 7.62235 7.66912 7.82205 7.84841 8.17123 8.76327 9.41419 9.51954 10.88321 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038046 B = 0.002008 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.770208 B =13942.758489 C =14105.160991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.595 6.595 11 C -0.117 4.117 12 C 0.028 3.972 13 N -0.516 5.516 14 C 0.062 3.938 15 C -0.132 4.132 16 C 0.518 3.482 17 O -0.515 6.515 18 N -0.678 5.678 19 C 0.179 3.821 20 C -0.133 4.133 21 C -0.072 4.072 22 C -0.173 4.173 23 C 0.116 3.884 24 F -0.139 7.139 25 C -0.185 4.185 26 C 0.056 3.944 27 H 0.266 0.734 28 H 0.383 0.617 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.414 0.586 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.037 0.963 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.877 -20.835 9.556 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.202 3.798 10 O -0.404 6.404 11 C -0.155 4.155 12 C -0.100 4.100 13 N -0.240 5.240 14 C -0.068 4.068 15 C -0.172 4.172 16 C 0.307 3.693 17 O -0.389 6.389 18 N -0.324 5.324 19 C 0.084 3.916 20 C -0.153 4.153 21 C -0.090 4.090 22 C -0.192 4.192 23 C 0.096 3.904 24 F -0.118 7.118 25 C -0.207 4.207 26 C -0.072 4.072 27 H 0.076 0.924 28 H 0.233 0.767 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.251 0.749 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.056 0.944 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.521 -21.335 9.050 23.612 hybrid contribution -0.728 1.125 0.244 1.362 sum 3.793 -20.210 9.294 22.566 Atomic orbital electron populations 1.69654 1.05937 1.27370 1.51055 1.25019 0.95008 0.99465 0.93942 0.86462 0.79859 0.82715 0.78185 1.20577 1.21180 1.19763 1.21694 0.93524 0.90571 1.50719 0.91973 1.19366 0.86514 0.91555 0.82373 1.86102 1.52124 1.54936 1.47267 1.22995 1.00778 0.91356 1.00409 1.23393 0.88330 0.99251 0.99030 1.64732 1.22402 1.05364 1.31522 1.21937 1.02183 0.88965 0.93691 1.21628 1.05066 0.88760 1.01717 1.21176 0.74875 0.89391 0.83881 1.90713 1.46590 1.77581 1.24013 1.43673 1.73703 1.04102 1.10933 1.17479 0.95003 0.83065 0.96047 1.21449 0.98967 0.95935 0.98931 1.20951 0.97606 0.92429 0.98062 1.21147 1.00519 1.01257 0.96287 1.17339 0.95474 0.86919 0.90678 1.91511 1.79545 1.70279 1.70418 1.20808 1.04225 0.91627 1.04017 1.22824 1.00550 0.95023 0.88765 0.92392 0.76659 0.91346 0.91675 0.94799 0.91772 0.94109 0.90478 0.87484 0.88422 0.74912 0.83487 0.84544 0.84705 0.84393 0.94439 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 10.88 55.43 0.60 -23.29 16 2 C 0.07 1.77 5.26 -17.82 -0.09 1.68 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.05 8.11 -34.44 -0.28 -14.33 16 8 H 0.06 1.65 7.34 -52.49 -0.39 1.27 16 9 C 0.24 5.98 0.99 -90.42 -0.09 5.89 16 10 O -0.59 -15.58 12.92 -35.23 -0.46 -16.04 16 11 C -0.12 -2.64 5.42 -24.78 -0.13 -2.78 16 12 C 0.03 0.51 5.92 -1.81 -0.01 0.50 16 13 N -0.52 -9.52 5.25 -230.34 -1.21 -10.72 16 14 C 0.06 0.95 3.99 -3.82 -0.02 0.93 16 15 C -0.13 -1.46 5.79 -27.88 -0.16 -1.63 16 16 C 0.52 5.94 7.67 -10.98 -0.08 5.85 16 17 O -0.51 -7.69 13.42 5.55 0.07 -7.61 16 18 N -0.68 -5.87 5.34 -9.87 -0.05 -5.92 16 19 C 0.18 1.75 6.30 -83.70 -0.53 1.22 16 20 C -0.13 -1.36 8.70 -39.38 -0.34 -1.70 16 21 C -0.07 -0.60 10.04 -39.62 -0.40 -1.00 16 22 C -0.17 -1.42 10.02 -39.48 -0.40 -1.82 16 23 C 0.12 1.07 7.30 -39.44 -0.29 0.78 16 24 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 25 C -0.19 -1.63 9.94 -39.33 -0.39 -2.02 16 26 C 0.06 1.21 6.13 -2.76 -0.02 1.19 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.38 10.13 7.17 45.56 0.33 10.46 16 29 H 0.07 1.63 7.86 -51.93 -0.41 1.23 16 30 H 0.06 1.54 8.02 -51.93 -0.42 1.12 16 31 H 0.03 0.64 7.81 -51.93 -0.41 0.23 16 32 H 0.06 1.02 7.80 -51.93 -0.40 0.62 16 33 H 0.04 0.69 7.79 -51.93 -0.40 0.29 16 34 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 0.98 7.37 -51.93 -0.38 0.60 16 37 H 0.41 2.22 8.82 -40.82 -0.36 1.86 16 38 H 0.15 1.69 6.22 -52.49 -0.33 1.36 16 39 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.04 0.82 7.59 -51.92 -0.39 0.43 16 43 H 0.08 1.74 7.39 -51.93 -0.38 1.36 16 LS Contribution 357.34 15.07 5.39 5.39 Total: -1.00 -30.05 357.34 -9.05 -39.10 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.19 Total: 12.05 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -3.23 Total: -7.22 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: -0.66 Total: -39.94 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.38 Total: -23.65 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.05 -9.05 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.796 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds