Wall clock time and date at job start Sat Apr 11 2020 00:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48497 * 109.46922 * 269.99711 * 3 2 1 5 5 H 1.48502 * 109.47122 * 29.99637 * 3 2 1 6 6 H 1.48500 * 109.47034 * 149.99413 * 3 2 1 7 7 C 1.37878 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00265 * 0.28107 * 7 2 1 10 10 O 1.42903 * 110.27287 * 59.01839 * 9 7 2 11 11 C 1.54598 * 110.30558 * 296.93360 * 9 7 2 12 12 C 1.55100 * 102.84750 * 219.18215 * 11 9 7 13 13 N 1.48535 * 103.28151 * 37.30578 * 12 11 9 14 14 C 1.46898 * 111.00256 * 200.33494 * 13 12 11 15 15 C 1.53004 * 109.47126 * 287.39586 * 14 13 12 16 16 C 1.50699 * 109.47033 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00390 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99548 * 179.97438 * 16 15 14 19 19 C 1.39923 * 119.99502 * 175.38133 * 18 16 15 20 20 C 1.38906 * 120.05966 * 35.09180 * 19 18 16 21 21 C 1.38103 * 119.97749 * 179.97438 * 20 19 18 22 22 C 1.38259 * 120.10022 * 0.02562 * 21 20 19 23 23 C 1.38494 * 120.11294 * 359.97438 * 22 21 20 24 24 F 1.35108 * 119.98955 * 180.02562 * 23 22 21 25 25 C 1.38356 * 120.01785 * 359.72461 * 23 22 21 26 26 C 1.47903 * 105.82049 * 320.85018 * 13 12 11 27 27 H 0.96996 * 120.00142 * 0.02562 * 1 2 3 28 28 H 0.96702 * 114.00050 * 300.70249 * 10 9 7 29 29 H 1.08997 * 110.72627 * 337.48100 * 11 9 7 30 30 H 1.08998 * 110.72731 * 100.76677 * 11 9 7 31 31 H 1.09003 * 110.59238 * 278.87808 * 12 11 9 32 32 H 1.08994 * 110.83308 * 155.84712 * 12 11 9 33 33 H 1.09001 * 109.46953 * 47.39245 * 14 13 12 34 34 H 1.08997 * 109.47634 * 167.39513 * 14 13 12 35 35 H 1.08994 * 109.47064 * 300.00028 * 15 14 13 36 36 H 1.09006 * 109.46761 * 59.99690 * 15 14 13 37 37 H 0.96998 * 120.00652 * 355.38434 * 18 16 15 38 38 H 1.07999 * 120.01212 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.94970 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.94741 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.04881 * 180.29971 * 25 23 22 42 42 H 1.09008 * 109.91693 * 265.97821 * 26 13 12 43 43 H 1.08999 * 110.08562 * 144.77768 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 -0.0053 10 8 0.4108 -2.5807 -1.1583 11 6 0.4086 -2.6381 1.2835 12 6 0.5679 -4.1392 1.6396 13 7 1.9791 -4.4279 1.2773 14 6 2.1893 -5.8691 1.0858 15 6 2.1625 -6.5733 2.4439 16 6 2.3774 -8.0519 2.2473 17 8 2.5368 -8.4985 1.1310 18 7 2.3936 -8.8779 3.3122 19 6 2.4961 -10.2605 3.1236 20 6 3.2642 -10.7656 2.0822 21 6 3.3647 -12.1306 1.8979 22 6 2.7014 -12.9958 2.7482 23 6 1.9345 -12.4965 3.7878 24 9 1.2878 -13.3442 4.6176 25 6 1.8355 -11.1300 3.9806 26 6 2.2341 -3.6841 0.0246 27 1 -0.4850 0.8400 -0.0004 28 1 -0.2437 -1.8714 -1.2190 29 1 0.8112 -2.0088 2.0772 30 1 -0.6361 -2.3949 1.0896 31 1 -0.1140 -4.7485 1.0463 32 1 0.4025 -4.3047 2.7042 33 1 1.3980 -6.2707 0.4527 34 1 3.1554 -6.0354 0.6093 35 1 2.9537 -6.1718 3.0769 36 1 1.1963 -6.4071 2.9203 37 1 2.3340 -8.5139 4.2094 38 1 3.7826 -10.0911 1.4169 39 1 3.9623 -12.5228 1.0883 40 1 2.7820 -14.0628 2.6021 41 1 1.2416 -10.7403 4.7941 42 1 2.0603 -4.3324 -0.8343 43 1 3.2599 -3.3159 0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:52 Heat of formation + Delta-G solvation = -119.302222 kcal Electronic energy + Delta-G solvation = -26224.208801 eV Core-core repulsion = 22182.773481 eV Total energy + Delta-G solvation = -4041.435320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.93149 -41.66821 -40.14970 -39.33289 -36.82685 -35.85511 -34.13248 -33.39654 -31.69828 -30.96540 -29.95111 -29.46039 -26.55101 -24.91491 -23.96117 -23.33934 -21.92544 -21.31824 -21.17185 -19.21391 -19.08098 -18.45363 -17.39517 -17.23070 -16.97267 -16.81717 -16.67327 -16.58919 -16.31013 -16.02798 -15.76667 -15.27257 -14.98763 -14.68589 -14.25499 -14.03151 -13.94591 -13.81561 -13.60864 -13.46037 -13.21337 -13.07223 -12.83713 -12.59552 -12.49820 -12.36124 -12.27656 -12.03486 -11.89898 -11.80687 -11.47034 -11.06266 -10.95457 -10.59477 -10.08996 -9.87513 -9.39114 -9.28223 -8.19791 -6.33216 0.07116 0.15871 1.41974 1.44181 1.47254 1.53703 1.84652 2.40891 2.61222 2.98464 3.12306 3.30468 3.68366 3.81080 3.86166 3.97847 4.02787 4.11232 4.13654 4.29231 4.36192 4.37330 4.45593 4.55851 4.60707 4.63428 4.83161 4.87211 4.95748 5.01230 5.07164 5.12045 5.19965 5.26440 5.30988 5.40734 5.43750 5.63775 5.78669 5.91005 5.95478 6.13813 6.20914 6.32246 6.71179 7.03138 7.36296 7.44967 8.86255 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038046 B = 0.002008 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.770208 B =13942.758489 C =14105.160991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.223 3.777 10 O -0.605 6.605 11 C -0.110 4.110 12 C 0.038 3.962 13 N -0.509 5.509 14 C 0.063 3.937 15 C -0.120 4.120 16 C 0.522 3.478 17 O -0.556 6.556 18 N -0.661 5.661 19 C 0.164 3.836 20 C -0.150 4.150 21 C -0.072 4.072 22 C -0.169 4.169 23 C 0.102 3.898 24 F -0.143 7.143 25 C -0.181 4.181 26 C 0.061 3.939 27 H 0.269 0.731 28 H 0.377 0.623 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.102 0.898 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.432 0.568 38 H 0.131 0.869 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.028 0.972 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.173 -21.773 11.351 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.785 3.215 4 H -0.205 1.205 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.072 0.928 9 C 0.183 3.817 10 O -0.414 6.414 11 C -0.149 4.149 12 C -0.089 4.089 13 N -0.233 5.233 14 C -0.066 4.066 15 C -0.159 4.159 16 C 0.311 3.689 17 O -0.433 6.433 18 N -0.308 5.308 19 C 0.069 3.931 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.189 4.189 23 C 0.082 3.918 24 F -0.122 7.122 25 C -0.202 4.202 26 C -0.067 4.067 27 H 0.078 0.922 28 H 0.227 0.773 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.120 0.880 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.271 0.729 38 H 0.148 0.852 39 H 0.175 0.825 40 H 0.173 0.827 41 H 0.175 0.825 42 H 0.046 0.954 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.818 -22.293 10.895 25.276 hybrid contribution -0.818 1.356 -0.337 1.619 sum 4.000 -20.936 10.557 23.787 Atomic orbital electron populations 1.69734 1.06783 1.28091 1.50890 1.25697 0.95862 1.02258 0.93531 0.85532 0.78783 0.79099 0.78038 1.20531 1.20533 1.19458 1.21939 0.93410 0.92012 1.51611 0.92764 1.19680 0.87130 0.92167 0.82711 1.86099 1.52214 1.54661 1.48418 1.22771 0.99096 0.94135 0.98852 1.23352 0.88271 0.96038 1.01260 1.64749 1.22245 1.06992 1.29352 1.21933 1.01230 0.87134 0.96282 1.21507 1.07088 0.88082 0.99263 1.21163 0.74357 0.89649 0.83760 1.90713 1.48713 1.78188 1.25719 1.43434 1.72535 1.03617 1.11201 1.17574 0.95630 0.83463 0.96433 1.21495 0.99665 0.96670 0.99216 1.21183 0.97583 0.91745 0.98563 1.21407 0.99539 1.02374 0.95533 1.17555 0.95953 0.87205 0.91094 1.91501 1.79699 1.70399 1.70598 1.20948 1.03795 0.91379 1.04066 1.22672 0.99510 0.94357 0.90172 0.92209 0.77300 0.92898 0.93312 0.94872 0.87968 0.95738 0.91081 0.85214 0.86400 0.72862 0.85154 0.82508 0.82661 0.82479 0.95368 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.94 10.88 21.45 0.23 -48.71 16 2 C 0.03 1.40 5.26 84.66 0.45 1.84 16 3 Si 0.96 42.28 29.54 68.60 2.03 44.31 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.55 -29.82 8.11 25.60 0.21 -29.62 16 8 H 0.05 2.93 7.34 -2.91 -0.02 2.91 16 9 C 0.22 11.17 0.99 -10.66 -0.01 11.16 16 10 O -0.60 -32.46 12.92 -148.98 -1.93 -34.38 16 11 C -0.11 -4.97 5.42 31.86 0.17 -4.80 16 12 C 0.04 1.36 5.92 86.71 0.51 1.87 16 13 N -0.51 -18.18 5.25 -882.67 -4.63 -22.81 16 14 C 0.06 1.88 3.99 86.31 0.34 2.22 16 15 C -0.12 -2.34 5.79 29.85 0.17 -2.17 16 16 C 0.52 11.11 7.67 87.66 0.67 11.78 16 17 O -0.56 -16.46 13.42 -3.04 -0.04 -16.50 16 18 N -0.66 -10.04 5.34 -303.53 -1.62 -11.66 16 19 C 0.16 2.95 6.30 38.15 0.24 3.19 16 20 C -0.15 -2.98 8.70 22.40 0.19 -2.79 16 21 C -0.07 -1.11 10.04 22.24 0.22 -0.89 16 22 C -0.17 -2.47 10.02 22.34 0.22 -2.25 16 23 C 0.10 1.70 7.30 22.36 0.16 1.86 16 24 F -0.14 -2.56 17.27 44.97 0.78 -1.79 16 25 C -0.18 -2.81 9.94 22.44 0.22 -2.59 16 26 C 0.06 2.67 6.13 86.44 0.53 3.20 16 27 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.38 20.57 7.17 -74.06 -0.53 20.03 16 29 H 0.05 2.52 7.86 -2.39 -0.02 2.50 16 30 H 0.05 2.32 8.02 -2.39 -0.02 2.31 16 31 H 0.03 1.19 7.81 -2.39 -0.02 1.17 16 32 H 0.10 2.89 7.80 -2.39 -0.02 2.87 16 33 H 0.02 0.81 7.79 -2.39 -0.02 0.80 16 34 H 0.07 2.20 8.04 -2.39 -0.02 2.18 16 35 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.12 1.89 7.37 -2.38 -0.02 1.87 16 37 H 0.43 3.31 8.82 -92.71 -0.82 2.49 16 38 H 0.13 3.04 6.22 -2.91 -0.02 3.02 16 39 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.03 1.26 7.59 -2.38 -0.02 1.24 16 43 H 0.07 3.32 7.39 -2.39 -0.02 3.30 16 Total: -1.00 -65.65 357.34 -1.16 -66.80 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.29 Total: 32.71 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 4.32 Total: -7.97 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -6.02 Total: -83.17 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -1.97 Total: -50.89 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -65.65 -1.16 -66.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.499 kcal (2) G-P(sol) polarization free energy of solvation -65.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds