Wall clock time and date at job start Sat Apr 11 2020 00:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48504 * 109.46994 * 269.99893 * 3 2 1 5 5 H 1.48494 * 109.47320 * 29.99937 * 3 2 1 6 6 H 1.48498 * 109.47152 * 150.00125 * 3 2 1 7 7 C 1.37882 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00076 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.37091 * 299.27981 * 9 7 2 11 11 C 1.54264 * 110.32174 * 61.45711 * 9 7 2 12 12 C 1.54379 * 105.15196 * 118.84609 * 11 9 7 13 13 N 1.48721 * 104.51539 * 336.26817 * 12 11 9 14 14 C 1.46896 * 111.01725 * 158.96801 * 13 12 11 15 15 C 1.53002 * 109.47088 * 54.48753 * 14 13 12 16 16 C 1.50698 * 109.46913 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00416 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99750 * 180.02562 * 16 15 14 19 19 C 1.39924 * 120.00370 * 175.37845 * 18 16 15 20 20 C 1.38907 * 120.05986 * 214.81349 * 19 18 16 21 21 C 1.38102 * 119.97581 * 179.76221 * 20 19 18 22 22 C 1.38270 * 120.09614 * 0.49293 * 21 20 19 23 23 C 1.38485 * 120.11307 * 359.78261 * 22 21 20 24 24 F 1.35106 * 119.98521 * 179.97438 * 23 22 21 25 25 C 1.38350 * 120.02293 * 359.95557 * 23 22 21 26 26 C 1.48566 * 104.28582 * 39.36190 * 13 12 11 27 27 H 0.97006 * 120.00168 * 359.97438 * 1 2 3 28 28 H 0.96695 * 114.00259 * 60.72086 * 10 9 7 29 29 H 1.09004 * 110.32585 * 237.79414 * 11 9 7 30 30 H 1.09001 * 110.32291 * 359.89677 * 11 9 7 31 31 H 1.08996 * 110.41353 * 94.97501 * 12 11 9 32 32 H 1.08999 * 110.41134 * 217.42044 * 12 11 9 33 33 H 1.09000 * 109.47331 * 174.49314 * 14 13 12 34 34 H 1.09008 * 109.46861 * 294.49060 * 14 13 12 35 35 H 1.09000 * 109.47492 * 300.00461 * 15 14 13 36 36 H 1.09008 * 109.47019 * 60.00403 * 15 14 13 37 37 H 0.97008 * 120.00045 * 355.38050 * 18 16 15 38 38 H 1.07994 * 120.00935 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.94794 * 180.25118 * 21 20 19 40 40 H 1.08001 * 119.93643 * 179.76182 * 22 21 20 41 41 H 1.07996 * 120.04532 * 179.97438 * 25 23 22 42 42 H 1.09006 * 110.40774 * 201.79453 * 26 13 12 43 43 H 1.08994 * 110.50679 * 79.40591 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4353 -2.6026 1.1683 11 6 0.3840 -2.6172 -1.2710 12 6 0.9163 -3.8648 -2.0082 13 7 2.3128 -4.0184 -1.5206 14 6 2.7925 -5.3925 -1.7202 15 6 2.6246 -5.7828 -3.1900 16 6 3.1160 -7.1926 -3.3946 17 8 3.5576 -7.8230 -2.4572 18 7 3.0659 -7.7526 -4.6195 19 6 3.6101 -9.0244 -4.8302 20 6 4.2217 -9.3277 -6.0400 21 6 4.7625 -10.5819 -6.2443 22 6 4.6873 -11.5398 -5.2500 23 6 4.0734 -11.2433 -4.0446 24 9 4.0009 -12.1815 -3.0751 25 6 3.5347 -9.9868 -3.8327 26 6 2.2349 -3.6864 -0.0746 27 1 -0.4851 0.8401 0.0004 28 1 -0.2325 -1.9075 1.2446 29 1 -0.6637 -2.7541 -1.0031 30 1 0.5021 -1.7304 -1.8937 31 1 0.3243 -4.7420 -1.7472 32 1 0.9037 -3.7036 -3.0862 33 1 3.8457 -5.4531 -1.4461 34 1 2.2146 -6.0734 -1.0951 35 1 1.5714 -5.7221 -3.4641 36 1 3.2025 -5.1019 -3.8151 37 1 2.6525 -7.2740 -5.3551 38 1 4.2779 -8.5817 -6.8188 39 1 5.2415 -10.8160 -7.1835 40 1 5.1078 -12.5210 -5.4140 41 1 3.0555 -9.7553 -2.8930 42 1 3.2148 -3.3921 0.3012 43 1 1.8505 -4.5346 0.4917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592147814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:56 Heat of formation + Delta-G solvation = -95.705056 kcal Electronic energy + Delta-G solvation = -26387.179215 eV Core-core repulsion = 22346.767145 eV Total energy + Delta-G solvation = -4040.412070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.12086 -40.84444 -38.86839 -38.21027 -35.21661 -34.97050 -32.13244 -32.03847 -30.92797 -30.03558 -28.56532 -27.65869 -24.84333 -23.83536 -23.11040 -22.39148 -20.87981 -19.92001 -19.38728 -18.48926 -17.47511 -17.01336 -16.68532 -16.43827 -15.89164 -15.80651 -15.70270 -15.19096 -14.84832 -14.62286 -14.20724 -14.03874 -13.72356 -13.61903 -13.39126 -12.91768 -12.71707 -12.36371 -12.29203 -12.11032 -11.91903 -11.86062 -11.37000 -11.09417 -10.96865 -10.76741 -10.70806 -10.54227 -10.44672 -10.31163 -10.05719 -9.89417 -9.14074 -9.04043 -8.59322 -8.55934 -8.11934 -7.86311 -6.15391 -4.20735 0.74335 0.87780 2.31286 2.63197 3.26485 3.27822 3.33393 3.38164 3.95839 4.30457 4.36417 4.46534 4.65562 4.71147 4.75024 4.93166 5.01556 5.12457 5.13744 5.16642 5.53586 5.62463 5.67317 5.75008 5.83514 5.88769 5.90777 5.99687 6.02979 6.06923 6.15950 6.24726 6.37356 6.51032 6.60636 6.87041 6.98646 7.04214 7.20503 7.53665 7.64531 7.66873 7.82264 7.86780 8.23413 8.81947 9.43883 9.52764 10.92086 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029927 B = 0.002171 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.375065 B =12894.831243 C =13262.956212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.248 3.752 10 O -0.595 6.595 11 C -0.121 4.121 12 C 0.028 3.972 13 N -0.501 5.501 14 C 0.059 3.941 15 C -0.137 4.137 16 C 0.517 3.483 17 O -0.514 6.514 18 N -0.678 5.678 19 C 0.179 3.821 20 C -0.158 4.158 21 C -0.072 4.072 22 C -0.174 4.174 23 C 0.118 3.882 24 F -0.137 7.137 25 C -0.161 4.161 26 C 0.054 3.946 27 H 0.265 0.735 28 H 0.382 0.618 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.416 0.584 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.078 0.922 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -17.889 -15.324 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.208 3.792 10 O -0.403 6.403 11 C -0.159 4.159 12 C -0.100 4.100 13 N -0.226 5.226 14 C -0.070 4.070 15 C -0.177 4.177 16 C 0.306 3.694 17 O -0.388 6.388 18 N -0.324 5.324 19 C 0.084 3.916 20 C -0.179 4.179 21 C -0.091 4.091 22 C -0.194 4.194 23 C 0.098 3.902 24 F -0.116 7.116 25 C -0.182 4.182 26 C -0.074 4.074 27 H 0.075 0.925 28 H 0.232 0.768 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.252 0.748 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.170 0.830 42 H 0.096 0.904 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.835 -18.343 -14.726 24.236 hybrid contribution -0.693 0.931 -0.043 1.161 sum 5.142 -17.412 -14.769 23.404 Atomic orbital electron populations 1.69699 1.05893 1.27255 1.51318 1.25013 0.94993 0.99409 0.94225 0.86469 0.79873 0.82806 0.78085 1.20635 1.21273 1.19837 1.21647 0.93567 0.90336 1.49976 0.91956 1.19267 0.86449 0.91548 0.81893 1.86094 1.52061 1.55743 1.46445 1.22848 0.98282 0.95496 0.99314 1.23220 0.88812 0.98522 0.99453 1.65434 1.21215 1.20405 1.15515 1.21990 1.01944 0.90280 0.92761 1.21732 1.03592 0.91432 1.00919 1.21169 0.77339 0.89339 0.81599 1.90725 1.43898 1.63797 1.40417 1.43669 1.59269 1.16308 1.13140 1.17474 0.95257 0.84613 0.94248 1.20997 1.01093 0.98404 0.97405 1.20780 0.97584 0.92033 0.98670 1.21135 1.03652 1.01605 0.92975 1.17519 0.99944 0.86387 0.86355 1.91517 1.94413 1.63771 1.61850 1.21273 1.03801 0.90954 1.02144 1.22997 1.00527 0.97463 0.86401 0.92504 0.76766 0.93104 0.90573 0.95338 0.91522 0.90162 0.94325 0.88280 0.87339 0.74779 0.84880 0.84564 0.84707 0.83019 0.90399 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.00 10.82 55.43 0.60 -23.40 16 2 C 0.06 1.71 5.02 -17.82 -0.09 1.62 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.88 8.10 -34.44 -0.28 -14.16 16 8 H 0.06 1.69 7.53 -52.49 -0.40 1.30 16 9 C 0.25 6.17 1.05 -90.39 -0.10 6.07 16 10 O -0.59 -15.56 12.94 -35.23 -0.46 -16.01 16 11 C -0.12 -2.73 5.55 -25.35 -0.14 -2.87 16 12 C 0.03 0.51 5.12 -2.09 -0.01 0.50 16 13 N -0.50 -9.44 5.49 -229.83 -1.26 -10.70 16 14 C 0.06 0.93 4.35 -3.83 -0.02 0.91 16 15 C -0.14 -1.56 5.42 -27.88 -0.15 -1.71 16 16 C 0.52 6.09 7.67 -10.99 -0.08 6.01 16 17 O -0.51 -8.00 13.42 5.55 0.07 -7.93 16 18 N -0.68 -5.89 5.34 -9.87 -0.05 -5.94 16 19 C 0.18 1.74 6.30 -83.70 -0.53 1.22 16 20 C -0.16 -1.15 9.96 -39.38 -0.39 -1.54 16 21 C -0.07 -0.48 10.04 -39.62 -0.40 -0.88 16 22 C -0.17 -1.43 10.02 -39.48 -0.40 -1.82 16 23 C 0.12 1.28 7.30 -39.45 -0.29 0.99 16 24 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 25 C -0.16 -1.88 8.67 -39.33 -0.34 -2.23 16 26 C 0.05 1.18 5.77 -2.18 -0.01 1.17 16 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.38 10.06 7.33 45.56 0.33 10.39 16 29 H 0.05 1.16 7.98 -51.93 -0.41 0.75 16 30 H 0.08 1.88 7.23 -51.93 -0.38 1.50 16 31 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 32 H 0.07 1.06 7.68 -51.93 -0.40 0.66 16 33 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.04 0.64 7.84 -51.92 -0.41 0.24 16 35 H 0.10 0.99 6.84 -51.93 -0.36 0.64 16 36 H 0.11 1.09 8.14 -51.92 -0.42 0.67 16 37 H 0.42 2.14 8.82 -40.82 -0.36 1.78 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.15 2.07 6.23 -52.49 -0.33 1.74 16 42 H 0.08 1.73 7.67 -51.93 -0.40 1.33 16 43 H 0.03 0.72 7.76 -51.93 -0.40 0.31 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -30.84 356.11 -9.09 -39.93 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.16 Total: 11.23 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -3.22 Total: -6.73 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: -0.71 Total: -40.05 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.38 Total: -23.94 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.84 -9.09 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.772 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds