Wall clock time and date at job start Sat Apr 11 2020 00:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00055 * 2 1 4 4 H 1.48504 * 109.46994 * 269.99893 * 3 2 1 5 5 H 1.48494 * 109.47320 * 29.99937 * 3 2 1 6 6 H 1.48498 * 109.47152 * 150.00125 * 3 2 1 7 7 C 1.37882 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00076 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.37091 * 299.27981 * 9 7 2 11 11 C 1.54264 * 110.32174 * 61.45711 * 9 7 2 12 12 C 1.54379 * 105.15196 * 118.84609 * 11 9 7 13 13 N 1.48721 * 104.51539 * 336.26817 * 12 11 9 14 14 C 1.46896 * 111.01725 * 158.96801 * 13 12 11 15 15 C 1.53002 * 109.47088 * 54.48753 * 14 13 12 16 16 C 1.50698 * 109.46913 * 180.02562 * 15 14 13 17 17 O 1.21285 * 120.00416 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99750 * 180.02562 * 16 15 14 19 19 C 1.39924 * 120.00370 * 175.37845 * 18 16 15 20 20 C 1.38907 * 120.05986 * 214.81349 * 19 18 16 21 21 C 1.38102 * 119.97581 * 179.76221 * 20 19 18 22 22 C 1.38270 * 120.09614 * 0.49293 * 21 20 19 23 23 C 1.38485 * 120.11307 * 359.78261 * 22 21 20 24 24 F 1.35106 * 119.98521 * 179.97438 * 23 22 21 25 25 C 1.38350 * 120.02293 * 359.95557 * 23 22 21 26 26 C 1.48566 * 104.28582 * 39.36190 * 13 12 11 27 27 H 0.97006 * 120.00168 * 359.97438 * 1 2 3 28 28 H 0.96695 * 114.00259 * 60.72086 * 10 9 7 29 29 H 1.09004 * 110.32585 * 237.79414 * 11 9 7 30 30 H 1.09001 * 110.32291 * 359.89677 * 11 9 7 31 31 H 1.08996 * 110.41353 * 94.97501 * 12 11 9 32 32 H 1.08999 * 110.41134 * 217.42044 * 12 11 9 33 33 H 1.09000 * 109.47331 * 174.49314 * 14 13 12 34 34 H 1.09008 * 109.46861 * 294.49060 * 14 13 12 35 35 H 1.09000 * 109.47492 * 300.00461 * 15 14 13 36 36 H 1.09008 * 109.47019 * 60.00403 * 15 14 13 37 37 H 0.97008 * 120.00045 * 355.38050 * 18 16 15 38 38 H 1.07994 * 120.00935 * 0.02562 * 20 19 18 39 39 H 1.08001 * 119.94794 * 180.25118 * 21 20 19 40 40 H 1.08001 * 119.93643 * 179.76182 * 22 21 20 41 41 H 1.07996 * 120.04532 * 179.97438 * 25 23 22 42 42 H 1.09006 * 110.40774 * 201.79453 * 26 13 12 43 43 H 1.08994 * 110.50679 * 79.40591 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4353 -2.6026 1.1683 11 6 0.3840 -2.6172 -1.2710 12 6 0.9163 -3.8648 -2.0082 13 7 2.3128 -4.0184 -1.5206 14 6 2.7925 -5.3925 -1.7202 15 6 2.6246 -5.7828 -3.1900 16 6 3.1160 -7.1926 -3.3946 17 8 3.5576 -7.8230 -2.4572 18 7 3.0659 -7.7526 -4.6195 19 6 3.6101 -9.0244 -4.8302 20 6 4.2217 -9.3277 -6.0400 21 6 4.7625 -10.5819 -6.2443 22 6 4.6873 -11.5398 -5.2500 23 6 4.0734 -11.2433 -4.0446 24 9 4.0009 -12.1815 -3.0751 25 6 3.5347 -9.9868 -3.8327 26 6 2.2349 -3.6864 -0.0746 27 1 -0.4851 0.8401 0.0004 28 1 -0.2325 -1.9075 1.2446 29 1 -0.6637 -2.7541 -1.0031 30 1 0.5021 -1.7304 -1.8937 31 1 0.3243 -4.7420 -1.7472 32 1 0.9037 -3.7036 -3.0862 33 1 3.8457 -5.4531 -1.4461 34 1 2.2146 -6.0734 -1.0951 35 1 1.5714 -5.7221 -3.4641 36 1 3.2025 -5.1019 -3.8151 37 1 2.6525 -7.2740 -5.3551 38 1 4.2779 -8.5817 -6.8188 39 1 5.2415 -10.8160 -7.1835 40 1 5.1078 -12.5210 -5.4140 41 1 3.0555 -9.7553 -2.8930 42 1 3.2148 -3.3921 0.3012 43 1 1.8505 -4.5346 0.4917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592147814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:43:55 Heat of formation + Delta-G solvation = -118.716639 kcal Electronic energy + Delta-G solvation = -26388.177072 eV Core-core repulsion = 22346.767145 eV Total energy + Delta-G solvation = -4041.409927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.95525 -41.68694 -40.16577 -39.34471 -36.90190 -35.84636 -34.15136 -33.40320 -31.64145 -31.00114 -29.99748 -29.30323 -26.56684 -25.02076 -23.96190 -23.33157 -21.96519 -21.43709 -20.96492 -19.27736 -19.02755 -18.39446 -17.45537 -17.19342 -16.90666 -16.80923 -16.69157 -16.63822 -16.54395 -16.04931 -15.67393 -15.23463 -15.00276 -14.59329 -14.38897 -14.18266 -13.94746 -13.82826 -13.60178 -13.45084 -13.16688 -12.85726 -12.84402 -12.62936 -12.51906 -12.36461 -12.27613 -12.05469 -12.01284 -11.81105 -11.47561 -10.98313 -10.92789 -10.58578 -10.11078 -9.85192 -9.39243 -9.28477 -8.17276 -6.29896 0.06388 0.19687 1.42467 1.44623 1.45349 1.54261 1.85962 2.42626 2.62478 2.95664 3.14126 3.28806 3.65876 3.79029 3.89116 4.01572 4.04995 4.10281 4.14964 4.26721 4.34470 4.37242 4.48755 4.50383 4.56147 4.60590 4.85264 4.87856 4.95135 5.02964 5.07499 5.10656 5.21189 5.25545 5.28252 5.38321 5.38957 5.68722 5.79737 5.92720 5.93820 6.14224 6.24900 6.31695 6.74576 7.02795 7.37820 7.45756 8.88574 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029927 B = 0.002171 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.375065 B =12894.831243 C =13262.956212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.229 3.771 10 O -0.605 6.605 11 C -0.114 4.114 12 C 0.037 3.963 13 N -0.502 5.502 14 C 0.061 3.939 15 C -0.125 4.125 16 C 0.519 3.481 17 O -0.561 6.561 18 N -0.659 5.659 19 C 0.162 3.838 20 C -0.144 4.144 21 C -0.063 4.063 22 C -0.170 4.170 23 C 0.088 3.912 24 F -0.153 7.153 25 C -0.187 4.187 26 C 0.059 3.941 27 H 0.268 0.732 28 H 0.377 0.623 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.435 0.565 38 H 0.168 0.832 39 H 0.177 0.823 40 H 0.155 0.845 41 H 0.121 0.879 42 H 0.067 0.933 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.735 -18.016 -18.950 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.190 3.810 10 O -0.413 6.413 11 C -0.152 4.152 12 C -0.090 4.090 13 N -0.226 5.226 14 C -0.067 4.067 15 C -0.164 4.164 16 C 0.308 3.692 17 O -0.439 6.439 18 N -0.306 5.306 19 C 0.067 3.933 20 C -0.164 4.164 21 C -0.081 4.081 22 C -0.189 4.189 23 C 0.069 3.931 24 F -0.132 7.132 25 C -0.208 4.208 26 C -0.070 4.070 27 H 0.077 0.923 28 H 0.226 0.774 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.275 0.725 38 H 0.186 0.814 39 H 0.194 0.806 40 H 0.173 0.827 41 H 0.139 0.861 42 H 0.085 0.915 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.625 -18.477 -18.405 26.908 hybrid contribution -0.928 0.929 1.062 1.689 sum 5.697 -17.549 -17.343 25.322 Atomic orbital electron populations 1.69775 1.06682 1.27973 1.51065 1.25661 0.95839 1.02102 0.93786 0.85557 0.78503 0.79254 0.78252 1.19857 1.20780 1.20138 1.21823 0.93203 0.91808 1.51010 0.93168 1.19569 0.87144 0.92048 0.82276 1.86090 1.52121 1.55495 1.47628 1.22629 0.97511 0.96755 0.98350 1.23208 0.88237 0.96744 1.00861 1.65401 1.21655 1.22578 1.13014 1.21957 1.00912 0.88069 0.95798 1.21622 1.05360 0.91508 0.97945 1.21199 0.76769 0.89287 0.81965 1.90731 1.46185 1.64811 1.42126 1.43419 1.58522 1.15962 1.12696 1.17667 0.96380 0.84389 0.94898 1.21409 0.98952 0.99386 0.96672 1.21293 0.96302 0.91096 0.99448 1.21471 1.02406 1.03067 0.91946 1.17851 1.01761 0.86141 0.87391 1.91466 1.94740 1.64244 1.62759 1.21192 1.05303 0.92399 1.01932 1.22834 0.99109 0.96292 0.88730 0.92301 0.77354 0.94066 0.92867 0.93999 0.87961 0.91086 0.95685 0.86117 0.85104 0.72477 0.81403 0.80587 0.82696 0.86121 0.91494 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.02 10.82 21.45 0.23 -48.78 16 2 C 0.03 1.37 5.02 84.66 0.43 1.79 16 3 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.54 -29.49 8.10 25.60 0.21 -29.28 16 8 H 0.05 2.79 7.53 -2.91 -0.02 2.76 16 9 C 0.23 11.57 1.05 -10.65 -0.01 11.56 16 10 O -0.60 -32.51 12.94 -148.98 -1.93 -34.43 16 11 C -0.11 -5.14 5.55 31.49 0.17 -4.97 16 12 C 0.04 1.28 5.12 86.42 0.44 1.72 16 13 N -0.50 -18.47 5.49 -881.06 -4.83 -23.31 16 14 C 0.06 1.88 4.35 86.30 0.38 2.25 16 15 C -0.12 -2.53 5.42 29.85 0.16 -2.37 16 16 C 0.52 11.63 7.67 87.66 0.67 12.31 16 17 O -0.56 -17.95 13.42 -3.04 -0.04 -17.99 16 18 N -0.66 -9.99 5.34 -303.53 -1.62 -11.61 16 19 C 0.16 2.88 6.30 38.15 0.24 3.12 16 20 C -0.14 -1.53 9.96 22.40 0.22 -1.31 16 21 C -0.06 -0.59 10.04 22.24 0.22 -0.36 16 22 C -0.17 -2.42 10.02 22.34 0.22 -2.20 16 23 C 0.09 1.95 7.30 22.36 0.16 2.11 16 24 F -0.15 -3.90 17.27 44.97 0.78 -3.13 16 25 C -0.19 -4.52 8.67 22.43 0.19 -4.33 16 26 C 0.06 2.62 5.77 86.45 0.50 3.12 16 27 H 0.27 13.66 8.31 -92.70 -0.77 12.89 16 28 H 0.38 20.47 7.33 -74.06 -0.54 19.93 16 29 H 0.04 1.89 7.98 -2.38 -0.02 1.87 16 30 H 0.05 2.62 7.23 -2.39 -0.02 2.60 16 31 H 0.04 1.36 8.00 -2.39 -0.02 1.34 16 32 H 0.10 2.86 7.68 -2.39 -0.02 2.84 16 33 H 0.07 2.30 8.10 -2.39 -0.02 2.28 16 34 H 0.02 0.84 7.84 -2.38 -0.02 0.82 16 35 H 0.12 1.97 6.84 -2.39 -0.02 1.95 16 36 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.43 2.90 8.82 -92.70 -0.82 2.08 16 38 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 39 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 40 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 41 H 0.12 3.62 6.23 -2.91 -0.02 3.60 16 42 H 0.07 3.08 7.67 -2.38 -0.02 3.06 16 43 H 0.03 1.26 7.76 -2.39 -0.02 1.24 16 Total: -1.00 -70.46 356.11 -1.48 -71.94 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.31 Total: 29.43 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 4.22 Total: -6.84 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -6.22 Total: -83.70 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -1.97 Total: -52.43 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -70.46 -1.48 -71.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592147814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.774 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds