Wall clock time and date at job start Sat Apr 11 2020 00:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48503 * 109.47142 * 270.00275 * 3 2 1 5 5 H 1.48500 * 109.47335 * 29.99929 * 3 2 1 6 6 H 1.48499 * 109.47205 * 150.00410 * 3 2 1 7 7 C 1.37873 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00108 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00180 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.27185 * 302.08868 * 9 7 2 11 11 C 1.54599 * 110.30749 * 64.28094 * 9 7 2 12 12 C 1.54938 * 102.91992 * 140.87891 * 11 9 7 13 13 N 1.48544 * 103.22405 * 322.58390 * 12 11 9 14 14 C 1.46902 * 110.99438 * 159.72180 * 13 12 11 15 15 C 1.53003 * 109.47447 * 52.60688 * 14 13 12 16 16 C 1.50701 * 109.46869 * 179.97438 * 15 14 13 17 17 O 1.21281 * 120.00377 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99371 * 179.97438 * 16 15 14 19 19 C 1.40030 * 119.99991 * 185.27067 * 18 16 15 20 20 C 1.38857 * 120.03987 * 33.29176 * 19 18 16 21 21 C 1.38112 * 119.94974 * 179.97438 * 20 19 18 22 22 C 1.38474 * 120.04765 * 359.97438 * 21 20 19 23 23 F 1.35100 * 119.95363 * 180.02562 * 22 21 20 24 24 C 1.38469 * 120.09055 * 0.28097 * 22 21 20 25 25 C 1.38112 * 120.04313 * 359.44444 * 24 22 21 26 26 C 1.47901 * 105.81962 * 39.21057 * 13 12 11 27 27 H 0.97004 * 119.99784 * 0.02562 * 1 2 3 28 28 H 0.96707 * 114.00139 * 57.90791 * 10 9 7 29 29 H 1.09000 * 110.72115 * 259.23212 * 11 9 7 30 30 H 1.08993 * 110.72722 * 22.34262 * 11 9 7 31 31 H 1.08994 * 110.66828 * 204.15268 * 12 11 9 32 32 H 1.09003 * 110.67260 * 81.01852 * 12 11 9 33 33 H 1.08993 * 109.47300 * 292.59950 * 14 13 12 34 34 H 1.09002 * 109.46857 * 172.60656 * 14 13 12 35 35 H 1.09000 * 109.46656 * 59.99402 * 15 14 13 36 36 H 1.08997 * 109.46632 * 299.99693 * 15 14 13 37 37 H 0.97007 * 120.00402 * 5.27397 * 18 16 15 38 38 H 1.07998 * 120.02325 * 359.97438 * 20 19 18 39 39 H 1.08009 * 119.97511 * 180.02562 * 21 20 19 40 40 H 1.08005 * 119.97801 * 179.70316 * 24 22 21 41 41 H 1.08005 * 120.02357 * 180.30246 * 25 24 22 42 42 H 1.09006 * 109.91728 * 94.02065 * 26 13 12 43 43 H 1.08997 * 109.91746 * 215.31304 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3873 -2.5722 1.1355 11 6 0.4375 -2.6489 -1.3065 12 6 0.6021 -4.1515 -1.6468 13 7 2.0056 -4.4373 -1.2532 14 6 2.2116 -5.8770 -1.0467 15 6 1.7292 -6.6434 -2.2799 16 6 1.9411 -8.1204 -2.0682 17 8 2.4303 -8.5206 -1.0330 18 7 1.5871 -8.9964 -3.0292 19 6 1.6807 -10.3731 -2.7906 20 6 1.4523 -10.8748 -1.5161 21 6 1.5446 -12.2330 -1.2830 22 6 1.8641 -13.0942 -2.3192 23 9 1.9534 -14.4225 -2.0892 24 6 2.0974 -12.5953 -3.5897 25 6 2.0006 -11.2384 -3.8283 26 6 2.2346 -3.6841 -0.0012 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2544 -1.8507 1.1887 29 1 -0.6112 -2.4044 -1.1377 30 1 0.8557 -2.0240 -2.0954 31 1 0.4594 -4.3222 -2.7138 32 1 -0.0919 -4.7565 -1.0632 33 1 1.6478 -6.2030 -0.1727 34 1 3.2721 -6.0733 -0.8887 35 1 2.2931 -6.3173 -3.1539 36 1 0.6687 -6.4471 -2.4378 37 1 1.2674 -8.6734 -3.8862 38 1 1.2027 -10.2035 -0.7078 39 1 1.3666 -12.6237 -0.2919 40 1 2.3512 -13.2682 -4.3955 41 1 2.1778 -10.8502 -4.8204 42 1 2.0431 -4.3261 0.8587 43 1 3.2600 -3.3156 0.0283 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:02 Heat of formation + Delta-G solvation = -97.638480 kcal Electronic energy + Delta-G solvation = -26245.259388 eV Core-core repulsion = 22204.763479 eV Total energy + Delta-G solvation = -4040.495910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.13663 -40.83707 -38.87618 -38.21885 -35.16585 -34.91199 -32.07294 -31.99916 -31.49903 -29.70513 -28.49426 -27.74441 -24.77503 -23.78949 -23.36624 -22.30934 -20.84337 -19.87550 -19.41001 -18.23568 -17.70416 -17.41185 -17.09808 -16.42336 -15.83895 -15.75306 -15.10406 -14.97126 -14.83613 -14.45678 -14.33399 -13.93685 -13.84888 -13.63267 -13.34878 -13.19698 -12.88450 -12.64489 -12.27157 -12.14964 -11.95631 -11.51345 -11.34634 -11.10563 -10.93440 -10.77356 -10.61342 -10.57908 -10.47418 -10.31423 -10.09943 -9.92888 -9.46353 -9.16868 -8.58989 -8.37910 -8.11110 -7.83554 -6.20132 -4.25968 0.72095 0.87215 2.32271 2.67336 3.23785 3.28915 3.30922 3.35292 3.97152 4.26368 4.32663 4.41896 4.49548 4.74556 4.84815 4.93354 5.00427 5.08770 5.12243 5.21980 5.51567 5.55460 5.67203 5.75060 5.84549 5.87568 5.89253 6.01184 6.05933 6.07548 6.18978 6.24249 6.44559 6.45974 6.58845 6.91961 7.00500 7.03463 7.25957 7.50438 7.61589 7.66982 7.82916 7.85261 8.16255 8.75719 9.41130 9.53110 10.87551 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.043130 B = 0.001986 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.047996 B =14092.921752 C =14228.340603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.595 6.595 11 C -0.118 4.118 12 C 0.027 3.973 13 N -0.515 5.515 14 C 0.062 3.938 15 C -0.138 4.138 16 C 0.517 3.483 17 O -0.516 6.516 18 N -0.678 5.678 19 C 0.143 3.857 20 C -0.094 4.094 21 C -0.131 4.131 22 C 0.077 3.923 23 F -0.142 7.142 24 C -0.133 4.133 25 C -0.120 4.120 26 C 0.055 3.945 27 H 0.266 0.734 28 H 0.384 0.616 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.414 0.586 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.038 0.962 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -20.763 -9.874 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.157 4.157 12 C -0.101 4.101 13 N -0.239 5.239 14 C -0.067 4.067 15 C -0.178 4.178 16 C 0.306 3.694 17 O -0.390 6.390 18 N -0.324 5.324 19 C 0.049 3.951 20 C -0.114 4.114 21 C -0.151 4.151 22 C 0.057 3.943 23 F -0.121 7.121 24 C -0.153 4.153 25 C -0.141 4.141 26 C -0.073 4.073 27 H 0.076 0.924 28 H 0.235 0.765 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.250 0.750 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.056 0.944 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.066 -21.262 -9.364 23.257 hybrid contribution -0.600 1.043 -0.021 1.203 sum 0.466 -20.219 -9.385 22.296 Atomic orbital electron populations 1.69621 1.05939 1.27391 1.51181 1.25019 0.95014 0.99480 0.93935 0.86452 0.79867 0.82686 0.78148 1.20559 1.21177 1.19791 1.21708 0.93567 0.90582 1.50638 0.91940 1.19360 0.86258 0.91580 0.82572 1.86092 1.52027 1.53904 1.48472 1.22977 1.00812 0.91429 1.00503 1.23341 0.88658 0.99195 0.98882 1.64894 1.23163 1.05154 1.30735 1.21994 1.01761 0.88522 0.94446 1.21751 1.04426 0.89076 1.02531 1.21126 0.76310 0.89068 0.82943 1.90731 1.41273 1.80148 1.26804 1.43695 1.66227 1.03711 1.18786 1.17813 0.99404 0.83396 0.94536 1.21083 0.98850 0.94628 0.96885 1.21074 1.01901 0.92976 0.99136 1.17689 1.04467 0.77611 0.94558 1.91494 1.94020 1.31248 1.95307 1.20915 1.02684 0.95815 0.95855 1.20752 1.01729 0.92373 0.99241 1.22874 1.00648 0.95039 0.88717 0.92364 0.76495 0.91739 0.91343 0.91664 0.94822 0.94174 0.90315 0.87586 0.88201 0.74996 0.83682 0.84348 0.84382 0.84576 0.94368 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.85 10.88 55.43 0.60 -23.24 16 2 C 0.07 1.76 5.26 -17.82 -0.09 1.67 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.06 8.10 -34.44 -0.28 -14.33 16 8 H 0.06 1.67 7.34 -52.48 -0.39 1.28 16 9 C 0.24 5.98 0.99 -90.42 -0.09 5.89 16 10 O -0.59 -15.54 12.93 -35.23 -0.46 -16.00 16 11 C -0.12 -2.66 5.50 -24.87 -0.14 -2.79 16 12 C 0.03 0.49 5.10 -1.89 -0.01 0.48 16 13 N -0.51 -9.51 5.40 -230.44 -1.24 -10.75 16 14 C 0.06 0.96 4.32 -3.82 -0.02 0.94 16 15 C -0.14 -1.53 5.36 -27.88 -0.15 -1.68 16 16 C 0.52 5.91 7.57 -10.99 -0.08 5.83 16 17 O -0.52 -7.78 13.67 5.56 0.08 -7.71 16 18 N -0.68 -5.69 5.34 -9.85 -0.05 -5.74 16 19 C 0.14 1.34 6.28 -83.66 -0.53 0.82 16 20 C -0.09 -1.00 8.66 -39.40 -0.34 -1.34 16 21 C -0.13 -1.26 10.02 -39.54 -0.40 -1.66 16 22 C 0.08 0.72 7.30 -39.41 -0.29 0.44 16 23 F -0.14 -1.44 17.26 2.25 0.04 -1.40 16 24 C -0.13 -1.04 10.02 -39.54 -0.40 -1.43 16 25 C -0.12 -0.89 9.96 -39.40 -0.39 -1.29 16 26 C 0.05 1.19 6.17 -2.76 -0.02 1.17 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.38 10.15 7.05 45.56 0.32 10.48 16 29 H 0.06 1.50 8.06 -51.93 -0.42 1.09 16 30 H 0.07 1.62 7.85 -51.93 -0.41 1.22 16 31 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 32 H 0.03 0.60 8.00 -51.93 -0.42 0.19 16 33 H 0.04 0.68 7.77 -51.93 -0.40 0.28 16 34 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.00 6.79 -51.93 -0.35 0.65 16 37 H 0.41 2.05 8.82 -40.82 -0.36 1.69 16 38 H 0.15 1.72 6.41 -52.49 -0.34 1.38 16 39 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.04 0.84 7.39 -51.93 -0.38 0.46 16 43 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -30.24 356.20 -9.07 -39.31 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -5.17 Total: 11.85 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -3.21 Total: -7.30 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: -0.69 Total: -39.74 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.38 Total: -23.70 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.24 -9.07 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.331 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds