Wall clock time and date at job start Sat Apr 11 2020 00:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00216 * 2 1 4 4 H 1.48500 * 109.46882 * 239.99940 * 3 2 1 5 5 H 1.48493 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46854 * 120.00210 * 3 2 1 7 7 C 1.37883 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00201 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47159 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99890 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00054 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00242 * 180.02562 * 14 12 11 16 16 C 1.53117 * 109.52727 * 155.00016 * 15 14 12 17 17 C 1.53042 * 109.28140 * 177.55896 * 16 15 14 18 18 N 1.46850 * 109.52031 * 300.82280 * 17 16 15 19 19 C 1.39615 * 110.99312 * 185.83943 * 18 17 16 20 20 C 1.34104 * 125.23335 * 179.97438 * 19 18 17 21 21 C 1.38582 * 114.71923 * 179.97438 * 20 19 18 22 22 C 1.33228 * 114.98467 * 0.02562 * 21 20 19 23 23 S 1.75858 * 109.74514 * 359.97438 * 22 21 20 24 24 C 1.46840 * 111.19891 * 61.73947 * 18 17 16 25 25 C 1.53032 * 109.52728 * 298.25627 * 24 18 17 26 26 H 0.97000 * 119.99862 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.47333 * 59.99559 * 9 7 2 28 28 H 1.09006 * 109.46515 * 299.99860 * 9 7 2 29 29 H 1.09005 * 109.47325 * 59.99574 * 10 9 7 30 30 H 1.08997 * 109.47159 * 299.99623 * 10 9 7 31 31 H 1.09005 * 109.47066 * 59.99763 * 11 10 9 32 32 H 1.08997 * 109.47061 * 300.00031 * 11 10 9 33 33 H 0.96996 * 119.99920 * 0.02562 * 14 12 11 34 34 H 1.09003 * 109.57396 * 34.83872 * 15 14 12 35 35 H 1.08994 * 109.50331 * 57.61590 * 16 15 14 36 36 H 1.09005 * 109.50171 * 297.49934 * 16 15 14 37 37 H 1.08999 * 109.45970 * 180.80095 * 17 16 15 38 38 H 1.09004 * 109.45723 * 60.83503 * 17 16 15 39 39 H 1.08005 * 122.63965 * 359.72511 * 20 19 18 40 40 H 1.07998 * 122.50722 * 179.97438 * 21 20 19 41 41 H 1.07999 * 125.12831 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.46507 * 58.27546 * 24 18 17 43 43 H 1.09007 * 109.45986 * 178.23806 * 24 18 17 44 44 H 1.08999 * 109.50495 * 299.23905 * 25 24 18 45 45 H 1.08997 * 109.50628 * 179.12063 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4802 -4.9872 -0.0033 12 6 2.4595 -6.1326 -0.0049 13 8 3.6518 -5.9110 -0.0052 14 7 2.0102 -7.4033 -0.0062 15 6 2.9621 -8.5168 -0.0072 16 6 2.3005 -9.7563 0.6014 17 6 3.2786 -10.9319 0.5420 18 7 3.6513 -11.1899 -0.8548 19 6 4.4390 -12.3380 -0.9584 20 6 4.9357 -12.8350 -2.1006 21 6 5.6910 -13.9873 -1.9512 22 6 5.8078 -14.4250 -0.6983 23 16 4.9329 -13.3549 0.3889 24 6 4.3309 -10.0302 -1.4460 25 6 3.3843 -8.8278 -1.4459 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8920 28 1 0.6241 -2.5574 0.8881 29 1 2.8720 -3.6052 0.8873 30 1 2.8718 -3.6037 -0.8927 31 1 0.8532 -5.0443 -0.8931 32 1 0.8539 -5.0454 0.8869 33 1 1.0566 -7.5805 -0.0064 34 1 3.8401 -8.2472 0.5798 35 1 1.4009 -10.0025 0.0375 36 1 2.0362 -9.5550 1.6396 37 1 2.8053 -11.8196 0.9617 38 1 4.1721 -10.6902 1.1176 39 1 4.7576 -12.3758 -3.0618 40 1 6.1498 -14.4930 -2.7878 41 1 6.3570 -15.3044 -0.3959 42 1 5.2195 -9.7929 -0.8611 43 1 4.6220 -10.2632 -2.4703 44 1 2.5017 -9.0594 -2.0421 45 1 3.8942 -7.9631 -1.8705 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593988282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:22 Heat of formation + Delta-G solvation = -41.305109 kcal Electronic energy + Delta-G solvation = -23864.078786 eV Core-core repulsion = 20392.238851 eV Total energy + Delta-G solvation = -3471.839936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29709 -40.21584 -38.21740 -36.27810 -35.88269 -34.05009 -32.76824 -32.14533 -29.84541 -28.76691 -26.22864 -25.10820 -24.57598 -23.63205 -22.20394 -21.42705 -20.93282 -20.00037 -19.08332 -18.56107 -17.72538 -17.30719 -16.79880 -16.64695 -16.48126 -16.02113 -15.69142 -15.42316 -15.20407 -14.83247 -14.47161 -14.41644 -14.21819 -13.77767 -13.76483 -13.57047 -13.38430 -13.10968 -12.90137 -12.68713 -12.60267 -12.50220 -12.40189 -12.37031 -12.01370 -11.92116 -11.58287 -11.53767 -11.45249 -11.27028 -10.80924 -10.66398 -10.53610 -10.07461 -9.42402 -8.81097 -8.19763 -6.29652 0.08849 0.54225 1.05152 1.39554 1.42320 1.50469 1.67399 1.84174 2.17277 2.42129 2.58938 3.13000 3.54361 3.72112 3.87953 3.94921 4.00378 4.16729 4.23834 4.28544 4.29801 4.30285 4.44290 4.45525 4.54923 4.64875 4.68736 4.78692 4.82929 4.92394 4.98779 5.03653 5.09999 5.12616 5.17513 5.21210 5.31947 5.49405 5.50422 5.55950 5.75689 5.76426 5.87575 5.91103 6.28058 6.59255 6.85542 7.30736 7.38797 8.91350 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.041706 B = 0.001769 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.197951 B =15824.479429 C =16047.291665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.051 0.949 9 C 0.025 3.975 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.518 3.482 13 O -0.584 6.584 14 N -0.713 5.713 15 C 0.142 3.858 16 C -0.111 4.111 17 C 0.048 3.952 18 N -0.452 5.452 19 C 0.003 3.997 20 C -0.187 4.187 21 C -0.118 4.118 22 C -0.232 4.232 23 S 0.066 5.934 24 C 0.066 3.934 25 C -0.122 4.122 26 H 0.264 0.736 27 H 0.001 0.999 28 H 0.001 0.999 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.418 0.582 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.039 0.961 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -33.148 -1.137 33.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.120 4.120 11 C -0.171 4.171 12 C 0.306 3.694 13 O -0.463 6.463 14 N -0.366 5.366 15 C 0.037 3.963 16 C -0.149 4.149 17 C -0.080 4.080 18 N -0.169 5.169 19 C -0.211 4.211 20 C -0.220 4.220 21 C -0.149 4.149 22 C -0.368 4.368 23 S 0.325 5.675 24 C -0.060 4.060 25 C -0.161 4.161 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.255 0.745 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.067 0.933 39 H 0.163 0.837 40 H 0.177 0.823 41 H 0.200 0.800 42 H 0.058 0.942 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.162 -32.875 0.162 33.448 hybrid contribution 0.843 1.130 -1.149 1.819 sum 7.004 -31.745 -0.987 32.523 Atomic orbital electron populations 1.70059 1.07441 1.27814 1.51480 1.25904 0.95846 1.03028 0.94713 0.85563 0.78396 0.78459 0.79011 1.19483 1.20327 1.19494 1.21669 0.93318 0.92861 1.50837 0.93120 1.19031 0.94235 0.92387 0.95563 1.21153 0.97602 0.93112 1.00177 1.21682 0.97949 0.91658 1.05763 1.21042 0.89341 0.84886 0.74144 1.90664 1.19045 1.85479 1.51132 1.45920 1.11097 1.04326 1.75212 1.20998 0.92680 0.86258 0.96398 1.21794 0.98955 0.91143 1.02991 1.22346 0.99346 1.00062 0.86278 1.59033 1.37512 1.01515 1.18852 1.23762 1.01109 0.99119 0.97114 1.20218 1.04227 0.99309 0.98233 1.20232 1.00251 0.96434 0.97932 1.25677 1.08339 1.06580 0.96185 1.84409 1.49692 1.22636 1.10716 1.22232 0.94852 0.88194 1.00771 1.21940 1.00415 0.96504 0.97252 0.92680 0.98038 0.98015 0.94216 0.94210 0.87391 0.87333 0.74508 0.91876 0.88657 0.88637 0.88320 0.93316 0.83690 0.82310 0.80026 0.94220 0.88814 0.89602 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.55 -32.38 9.11 25.60 0.23 -32.15 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.08 -3.60 4.44 30.59 0.14 -3.47 16 11 C -0.13 -4.11 5.70 29.85 0.17 -3.94 16 12 C 0.52 15.65 7.80 87.66 0.68 16.33 16 13 O -0.58 -23.01 15.64 -3.02 -0.05 -23.06 16 14 N -0.71 -14.48 5.08 -442.16 -2.25 -16.73 16 15 C 0.14 2.68 2.52 45.07 0.11 2.80 16 16 C -0.11 -1.39 5.57 30.65 0.17 -1.22 16 17 C 0.05 0.66 4.53 86.33 0.39 1.05 16 18 N -0.45 -7.30 4.74 -699.04 -3.31 -10.61 16 19 C 0.00 0.06 6.03 82.51 0.50 0.56 16 20 C -0.19 -2.90 9.50 21.41 0.20 -2.70 16 21 C -0.12 -1.53 10.18 21.22 0.22 -1.32 16 22 C -0.23 -2.91 11.21 66.69 0.75 -2.16 16 23 S 0.07 0.96 21.47 -56.49 -1.21 -0.25 16 24 C 0.07 1.13 5.31 86.33 0.46 1.59 16 25 C -0.12 -2.29 5.67 30.65 0.17 -2.11 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 28 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 29 H 0.04 1.82 8.10 -2.38 -0.02 1.80 16 30 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 31 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 32 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.42 5.70 8.61 -92.71 -0.80 4.90 16 34 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.10 1.20 7.51 -2.39 -0.02 1.18 16 38 H 0.05 0.73 8.06 -2.38 -0.02 0.71 16 39 H 0.15 2.01 7.60 -2.91 -0.02 1.99 16 40 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.09 1.46 7.20 -2.38 -0.02 1.44 16 44 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -72.75 377.26 0.47 -72.28 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.17 Total: 11.71 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 4.81 Total: -24.63 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -5.28 Total: -83.35 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -1.21 Total: -0.25 kcal Total: -72.75 0.47 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593988282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.974 kcal (2) G-P(sol) polarization free energy of solvation -72.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds