Wall clock time and date at job start Sat Apr 11 2020 00:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47563 * 305.00337 * 12 11 10 14 14 N 1.46910 * 109.47127 * 65.00091 * 12 11 10 15 15 C 1.50700 * 109.47798 * 185.00026 * 12 11 10 16 16 O 1.21283 * 120.00117 * 260.00788 * 15 12 11 17 17 N 1.34772 * 119.99971 * 79.99728 * 15 12 11 18 18 C 1.46496 * 120.00222 * 180.02562 * 17 15 12 19 19 H 1.09004 * 109.46846 * 324.99989 * 18 17 15 20 20 C 1.50699 * 109.47259 * 205.00152 * 18 17 15 21 21 C 1.33394 * 125.20204 * 140.00085 * 20 18 17 22 22 C 1.38431 * 114.91716 * 179.97438 * 21 20 18 23 23 C 1.33381 * 114.92129 * 359.97438 * 22 21 20 24 24 S 1.75879 * 125.20259 * 319.69096 * 20 18 17 25 25 C 1.53006 * 109.47353 * 84.99928 * 18 17 15 26 26 C 1.52999 * 117.49692 * 8.62208 * 25 18 17 27 27 C 1.52999 * 60.00099 * 252.51264 * 26 25 18 28 28 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 30 30 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 31 31 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 32 32 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 33 33 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 34 34 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 35 35 H 1.00892 * 110.99957 * 60.00190 * 14 12 11 36 36 H 1.00899 * 110.99816 * 183.95423 * 14 12 11 37 37 H 0.97003 * 120.00400 * 0.02562 * 17 15 12 38 38 H 1.07995 * 122.53812 * 359.95123 * 21 20 18 39 39 H 1.07993 * 122.53702 * 180.02562 * 22 21 20 40 40 H 1.08000 * 125.20428 * 180.02562 * 23 22 21 41 41 H 1.09003 * 115.54938 * 154.33271 * 25 18 17 42 42 H 1.08994 * 117.49940 * 0.02562 * 26 25 18 43 43 H 1.09000 * 117.49666 * 145.02221 * 26 25 18 44 44 H 1.09006 * 117.49916 * 252.51675 * 27 26 25 45 45 H 1.08996 * 117.51897 * 107.47924 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4746 -6.1500 0.0024 13 1 3.1588 -6.0435 -0.8394 14 7 3.2378 -6.1413 1.2577 15 6 1.7253 -7.4517 -0.1209 16 8 1.5130 -8.1249 0.8653 17 7 1.2910 -7.8676 -1.3271 18 6 0.5621 -9.1327 -1.4469 19 1 0.9617 -9.8513 -0.7313 20 6 0.7213 -9.6737 -2.8444 21 6 0.9040 -10.9579 -3.1556 22 6 1.0243 -11.2184 -4.5098 23 6 0.9388 -10.1460 -5.2982 24 16 0.6869 -8.7095 -4.3149 25 6 -0.9216 -8.8959 -1.1576 26 6 -1.3911 -7.4467 -1.0152 27 6 -1.2933 -8.3441 0.2202 28 1 -0.4850 0.8400 -0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6247 -2.5564 0.8919 31 1 2.8714 -3.6047 -0.8890 32 1 2.8726 -3.6039 0.8910 33 1 0.8541 -5.0447 0.8922 34 1 0.8534 -5.0451 -0.8877 35 1 2.6256 -6.2389 2.0537 36 1 3.9454 -6.8605 1.2555 37 1 1.4610 -7.3292 -2.1159 38 1 0.9546 -11.7353 -2.4077 39 1 1.1751 -12.2146 -4.8986 40 1 1.0094 -10.1582 -6.3759 41 1 -1.6093 -9.6053 -1.6180 42 1 -0.6431 -6.6620 -1.1280 43 1 -2.3879 -7.2023 -1.3821 44 1 -2.2259 -8.6901 0.6660 45 1 -0.4810 -8.1501 0.9205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594427200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:32 Heat of formation + Delta-G solvation = 7.855464 kcal Electronic energy + Delta-G solvation = -24793.246028 eV Core-core repulsion = 21323.537855 eV Total energy + Delta-G solvation = -3469.708173 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60602 -38.41363 -37.23148 -35.66807 -34.25068 -33.32773 -31.35109 -30.93502 -28.05805 -26.80262 -24.86845 -23.62903 -22.66785 -22.31564 -20.74178 -20.32803 -20.00607 -19.28476 -18.08645 -17.08546 -16.47059 -16.29310 -15.97261 -15.64095 -15.54413 -14.70912 -14.46077 -14.35830 -13.86088 -13.67315 -13.24090 -13.09042 -12.99016 -12.81674 -12.40344 -12.37298 -12.11569 -11.76333 -11.53022 -11.47486 -11.12140 -11.06501 -10.73336 -10.66177 -10.48600 -10.41289 -10.25238 -10.09354 -9.60682 -9.31995 -9.21927 -9.03682 -9.00868 -8.79742 -8.57149 -8.28608 -5.94324 -3.95868 0.61995 1.25660 1.66348 2.35925 2.48201 3.00825 3.35496 3.41715 3.45800 3.74158 4.22068 4.49907 4.55289 4.67092 4.73236 4.80473 4.87713 5.01016 5.10695 5.16130 5.20458 5.29468 5.38263 5.40440 5.41624 5.69625 5.72634 5.82712 5.90680 5.91780 6.06098 6.08064 6.10555 6.25537 6.29292 6.45200 6.81974 7.01020 7.06157 7.24766 7.31105 7.50257 7.75824 7.91255 8.04268 8.07270 8.50587 9.11791 9.67872 11.17083 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015555 B = 0.002763 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.644163 B =10131.823999 C =10659.975339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.100 4.100 11 C -0.103 4.103 12 C 0.077 3.923 13 H 0.100 0.900 14 N -0.810 5.810 15 C 0.487 3.513 16 O -0.541 6.541 17 N -0.724 5.724 18 C 0.248 3.752 19 H 0.106 0.894 20 C -0.184 4.184 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.213 4.213 24 S 0.118 5.882 25 C -0.173 4.173 26 C -0.172 4.172 27 C -0.178 4.178 28 H 0.259 0.741 29 H 0.012 0.988 30 H 0.014 0.986 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.350 0.650 36 H 0.338 0.662 37 H 0.402 0.598 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -24.549 -8.556 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.039 4.039 13 H 0.118 0.882 14 N -0.338 5.338 15 C 0.273 3.727 16 O -0.418 6.418 17 N -0.377 5.377 18 C 0.141 3.859 19 H 0.124 0.876 20 C -0.302 4.302 21 C -0.160 4.160 22 C -0.166 4.166 23 C -0.349 4.349 24 S 0.382 5.618 25 C -0.192 4.192 26 C -0.209 4.209 27 C -0.215 4.215 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.165 0.835 36 H 0.150 0.850 37 H 0.237 0.763 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.182 0.818 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.262 -22.618 -8.358 24.114 hybrid contribution 0.104 -1.440 -0.237 1.463 sum 0.365 -24.058 -8.596 25.550 Atomic orbital electron populations 1.69965 1.06041 1.26452 1.51240 1.25027 0.94821 0.99195 0.95506 0.86627 0.79924 0.83631 0.78020 1.20757 1.21311 1.19857 1.21280 0.93070 0.91106 1.50009 0.92676 1.19112 0.94070 0.91599 0.96915 1.21540 0.98780 0.92258 1.01178 1.21670 0.96488 0.94049 1.01928 1.21793 0.95905 0.90727 0.95440 0.88204 1.59030 1.17307 1.54278 1.03214 1.22591 0.78637 0.88927 0.82544 1.90615 1.57160 1.57219 1.36854 1.46350 1.57736 1.23008 1.10578 1.18757 0.90513 0.86364 0.90272 0.87636 1.24587 1.09986 0.97474 0.98122 1.20105 1.03399 0.95710 0.96757 1.20153 1.03839 0.99877 0.92707 1.25706 1.09850 0.95717 1.03645 1.84456 1.70559 1.10436 0.96359 1.22690 0.95324 0.98629 1.02574 1.23010 1.02623 0.92776 1.02492 1.23326 1.03857 1.03069 0.91211 0.93120 0.96982 0.96781 0.93689 0.91799 0.91793 0.92012 0.83530 0.84982 0.76314 0.84157 0.84177 0.81769 0.87291 0.88281 0.88872 0.89246 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.01 5.04 -26.73 -0.13 -2.14 16 11 C -0.10 -1.65 4.84 -26.74 -0.13 -1.78 16 12 C 0.08 1.01 3.15 -68.86 -0.22 0.80 16 13 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 14 N -0.81 -10.70 8.44 -5.65 -0.05 -10.74 16 15 C 0.49 6.17 5.90 -10.99 -0.06 6.11 16 16 O -0.54 -8.04 13.28 5.55 0.07 -7.96 16 17 N -0.72 -7.75 3.60 -54.93 -0.20 -7.95 16 18 C 0.25 2.54 2.86 -69.08 -0.20 2.34 16 19 H 0.11 1.19 7.56 -51.93 -0.39 0.79 16 20 C -0.18 -1.68 5.42 -36.00 -0.20 -1.87 16 21 C -0.13 -1.06 10.04 -41.20 -0.41 -1.47 16 22 C -0.14 -1.00 10.18 -41.21 -0.42 -1.41 16 23 C -0.21 -1.59 11.23 29.04 0.33 -1.27 16 24 S 0.12 1.02 22.32 -107.50 -2.40 -1.38 16 25 C -0.17 -1.82 5.69 -90.62 -0.52 -2.33 16 26 C -0.17 -2.01 9.73 -26.73 -0.26 -2.28 16 27 C -0.18 -2.14 9.82 -26.73 -0.26 -2.40 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.94 7.45 -51.93 -0.39 0.56 16 35 H 0.35 4.79 8.58 -39.30 -0.34 4.45 16 36 H 0.34 3.87 9.06 -39.29 -0.36 3.52 16 37 H 0.40 3.93 7.69 -40.82 -0.31 3.62 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.11 1.06 8.11 -51.93 -0.42 0.64 16 42 H 0.10 1.26 5.97 -51.93 -0.31 0.95 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.12 1.68 5.02 -51.93 -0.26 1.42 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -31.59 379.64 -11.12 -42.70 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -6.95 Total: 10.13 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -3.03 Total: -20.89 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.49 Total: -45.17 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.96 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.40 Total: -1.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.59 -11.12 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594427200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.560 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds