Wall clock time and date at job start Sat Apr 11 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00207 * 2 1 4 4 H 1.48506 * 109.47061 * 270.00225 * 3 2 1 5 5 H 1.48500 * 109.46856 * 29.99879 * 3 2 1 6 6 H 1.48496 * 109.47252 * 150.00094 * 3 2 1 7 7 C 1.37884 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99631 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52189 * 299.91421 * 9 7 2 11 11 C 1.53042 * 109.49173 * 179.83624 * 9 7 2 12 12 C 1.53078 * 109.65463 * 178.74692 * 11 9 7 13 13 C 1.53184 * 109.29479 * 61.15451 * 12 11 9 14 14 N 1.46928 * 108.89692 * 305.57893 * 13 12 11 15 15 C 1.34782 * 120.62925 * 233.52206 * 14 13 12 16 16 O 1.21579 * 119.99634 * 174.76645 * 15 14 13 17 17 N 1.34773 * 119.99971 * 354.76182 * 15 14 13 18 18 C 1.46500 * 119.99664 * 184.98679 * 17 15 14 19 19 C 1.52999 * 109.47061 * 180.02562 * 18 17 15 20 20 C 1.52994 * 109.47307 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47475 * 180.02562 * 20 19 18 22 22 C 1.33393 * 125.20652 * 89.99975 * 21 20 19 23 23 C 1.38428 * 114.92334 * 179.97438 * 22 21 20 24 24 C 1.33391 * 114.91837 * 359.97438 * 23 22 21 25 25 S 1.75882 * 109.59513 * 359.76102 * 24 23 22 26 26 C 1.46917 * 118.73731 * 53.53327 * 14 13 12 27 27 H 0.96998 * 119.99728 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46233 * 298.69967 * 11 9 7 29 29 H 1.08995 * 109.46279 * 58.67923 * 11 9 7 30 30 H 1.08997 * 109.39233 * 301.27605 * 12 11 9 31 31 H 1.09001 * 109.62401 * 181.16924 * 12 11 9 32 32 H 1.09007 * 109.59097 * 185.71636 * 13 12 11 33 33 H 1.09006 * 109.59142 * 65.43691 * 13 12 11 34 34 H 0.96995 * 120.00259 * 4.98356 * 17 15 14 35 35 H 1.09001 * 109.47117 * 299.99877 * 18 17 15 36 36 H 1.09001 * 109.47427 * 59.99849 * 18 17 15 37 37 H 1.09001 * 109.47003 * 299.99883 * 19 18 17 38 38 H 1.09001 * 109.47176 * 59.99631 * 19 18 17 39 39 H 1.09002 * 109.47411 * 300.00264 * 20 19 18 40 40 H 1.09001 * 109.47281 * 59.99724 * 20 19 18 41 41 H 1.08000 * 122.53625 * 0.02562 * 22 21 20 42 42 H 1.07992 * 122.53755 * 180.02562 * 23 22 21 43 43 H 1.07997 * 125.19717 * 179.97438 * 24 23 22 44 44 H 1.08998 * 109.59125 * 66.18577 * 26 14 13 45 45 H 1.08999 * 109.58791 * 186.60843 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6248 -2.5582 0.8908 11 6 2.2450 -3.6628 -0.0029 12 6 1.4837 -4.9904 0.0286 13 6 0.6032 -5.0988 -1.2203 14 7 -0.2555 -3.9094 -1.3017 15 6 -1.5922 -4.0344 -1.4215 16 8 -2.3001 -3.0464 -1.3922 17 7 -2.1439 -5.2546 -1.5738 18 6 -3.5835 -5.3827 -1.8133 19 6 -3.9484 -6.8624 -1.9481 20 6 -5.4519 -6.9964 -2.1975 21 6 -5.8114 -8.4539 -2.3297 22 6 -6.1682 -9.2523 -1.3225 23 6 -6.4544 -10.5571 -1.6856 24 6 -6.3303 -10.8181 -2.9879 25 16 -5.8329 -9.3603 -3.8369 26 6 0.3705 -2.5813 -1.2504 27 1 -0.4849 0.8400 0.0004 28 1 2.8543 -3.6173 -0.9056 29 1 2.8889 -3.5930 0.8737 30 1 0.8571 -5.0273 0.9197 31 1 2.1923 -5.8185 0.0470 32 1 -0.0165 -5.9931 -1.1541 33 1 1.2334 -5.1559 -2.1079 34 1 -1.5879 -6.0478 -1.5248 35 1 -4.1311 -4.9486 -0.9767 36 1 -3.8473 -4.8580 -2.7315 37 1 -3.4008 -7.2969 -2.7844 38 1 -3.6847 -7.3868 -1.0296 39 1 -5.9992 -6.5620 -1.3609 40 1 -5.7160 -6.4719 -3.1159 41 1 -6.2301 -8.9067 -0.3011 42 1 -6.7560 -11.3066 -0.9691 43 1 -6.5113 -11.7770 -3.4506 44 1 0.9835 -2.4316 -2.1391 45 1 -0.4027 -1.8144 -1.2039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595577096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:40 Heat of formation + Delta-G solvation = -27.510733 kcal Electronic energy + Delta-G solvation = -24330.381390 eV Core-core repulsion = 20859.139624 eV Total energy + Delta-G solvation = -3471.241767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.26233 -38.98369 -38.51074 -36.72429 -35.34656 -34.19716 -33.26216 -31.52016 -30.17449 -27.30432 -26.82419 -25.64101 -23.97935 -23.42888 -22.57375 -21.68480 -20.31454 -20.07658 -19.03719 -18.23809 -18.01019 -17.12863 -16.85273 -16.52683 -16.30286 -15.77444 -15.31157 -15.20215 -15.14662 -14.58795 -14.45466 -14.23408 -14.12454 -13.79556 -13.66444 -13.51753 -13.33070 -12.88632 -12.85483 -12.73118 -12.63687 -12.34613 -12.27394 -12.20720 -11.83580 -11.80677 -11.61475 -11.51977 -11.21350 -10.94049 -10.81758 -10.50985 -10.14198 -9.52669 -9.36578 -9.23580 -8.08355 -6.26162 0.11613 0.76060 1.14393 1.41601 1.41831 1.53011 1.79194 1.91868 2.25970 2.43048 3.07110 3.21053 3.66651 4.00138 4.04385 4.16469 4.24079 4.25571 4.29936 4.32692 4.49084 4.61674 4.65178 4.72179 4.76031 4.77371 4.82356 4.85744 4.91047 5.09998 5.12062 5.20002 5.28236 5.29496 5.30738 5.35000 5.43965 5.56742 5.59586 5.64540 5.67283 5.91036 6.00105 6.19319 6.37760 6.87401 7.16140 7.43761 7.70942 8.94702 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028087 B = 0.002139 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.650683 B =13087.636961 C =13648.513290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.017 1.017 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.628 5.628 15 C 0.691 3.309 16 O -0.641 6.641 17 N -0.735 5.735 18 C 0.138 3.862 19 C -0.107 4.107 20 C -0.045 4.045 21 C -0.178 4.178 22 C -0.148 4.148 23 C -0.142 4.142 24 C -0.220 4.220 25 S 0.077 5.923 26 C 0.141 3.859 27 H 0.259 0.741 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.408 0.592 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.150 0.850 42 H 0.157 0.843 43 H 0.181 0.819 44 H 0.035 0.965 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 -25.216 -5.885 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.001 0.999 11 C -0.143 4.143 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.364 5.364 15 C 0.392 3.608 16 O -0.523 6.523 17 N -0.394 5.394 18 C 0.014 3.986 19 C -0.145 4.145 20 C -0.085 4.085 21 C -0.295 4.295 22 C -0.179 4.179 23 C -0.172 4.172 24 C -0.355 4.355 25 S 0.340 5.660 26 C 0.018 3.982 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.247 0.753 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.167 0.833 42 H 0.174 0.826 43 H 0.199 0.801 44 H 0.053 0.947 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.859 -24.076 -7.402 27.050 hybrid contribution 0.077 0.750 1.606 1.774 sum -9.782 -23.326 -5.797 25.950 Atomic orbital electron populations 1.70115 1.07457 1.27189 1.50599 1.25938 0.95565 1.03033 0.94689 0.85548 0.78716 0.79051 0.78300 1.19984 1.21422 1.18638 1.21525 0.93285 0.91485 1.51076 0.91896 1.18911 0.93084 0.93837 0.92309 0.99862 1.21510 0.97641 0.94184 1.00923 1.21915 0.98991 0.98217 0.97267 1.21858 0.93573 0.86646 0.99160 1.47682 1.04104 1.08935 1.75696 1.16241 0.82477 0.84042 0.78013 1.90886 1.61831 1.39154 1.60391 1.45098 1.09968 1.05933 1.78447 1.21200 0.79222 0.97583 1.00580 1.21655 0.95835 0.93246 1.03779 1.20029 0.95467 0.89057 1.03942 1.24558 1.08656 1.00378 0.95950 1.20425 1.03110 0.93644 1.00675 1.20449 1.03131 0.97402 0.96227 1.25911 1.09315 1.02474 0.97784 1.84427 1.67834 1.02845 1.10857 1.21578 0.96816 0.82114 0.97647 0.93204 0.92337 0.93043 0.93356 0.87626 0.88165 0.90169 0.75301 0.93070 0.92881 0.90289 0.89942 0.88937 0.90223 0.83273 0.82567 0.80146 0.94694 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.03 11.39 21.45 0.24 -56.79 16 2 C 0.01 0.40 5.30 84.66 0.45 0.85 16 3 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.54 -29.95 8.56 25.60 0.22 -29.73 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.04 1.96 2.26 -11.46 -0.03 1.93 16 10 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 11 C -0.10 -4.07 5.10 30.63 0.16 -3.91 16 12 C -0.13 -3.68 6.09 30.68 0.19 -3.49 16 13 C 0.11 3.08 6.38 86.36 0.55 3.63 16 14 N -0.63 -25.76 2.97 -836.93 -2.49 -28.25 16 15 C 0.69 29.19 8.29 179.05 1.49 30.67 16 16 O -0.64 -34.62 15.77 -3.97 -0.06 -34.69 16 17 N -0.73 -21.17 5.46 -478.54 -2.62 -23.79 16 18 C 0.14 3.42 5.68 86.38 0.49 3.91 16 19 C -0.11 -1.69 5.31 30.59 0.16 -1.53 16 20 C -0.05 -0.67 5.71 29.84 0.17 -0.50 16 21 C -0.18 -2.74 5.76 24.59 0.14 -2.60 16 22 C -0.15 -2.12 10.05 21.22 0.21 -1.90 16 23 C -0.14 -1.80 10.18 21.22 0.22 -1.59 16 24 C -0.22 -2.76 11.23 66.72 0.75 -2.01 16 25 S 0.08 1.14 23.33 -56.49 -1.32 -0.17 16 26 C 0.14 7.26 5.41 86.36 0.47 7.73 16 27 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 31 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.10 2.00 5.65 -2.38 -0.01 1.99 16 33 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.41 8.65 5.96 -92.71 -0.55 8.09 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 43 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.07 4.65 5.11 -2.39 -0.01 4.63 16 Total: -1.00 -77.31 373.90 1.84 -75.46 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.43 Total: 19.77 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.63 Total: 1.47 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -4.86 Total: -108.82 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.06 Total: -34.69 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -1.32 Total: -0.17 kcal Total: -77.31 1.84 -75.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595577096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.954 kcal (2) G-P(sol) polarization free energy of solvation -77.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds