Wall clock time and date at job start Sat Apr 11 2020 00:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99816 * 2 1 4 4 H 1.48497 * 109.47063 * 270.00242 * 3 2 1 5 5 H 1.48499 * 109.47072 * 30.00563 * 3 2 1 6 6 H 1.48501 * 109.46938 * 150.00653 * 3 2 1 7 7 C 1.37880 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99616 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00063 * 179.97438 * 7 2 1 10 10 H 1.09006 * 109.53606 * 60.09730 * 9 7 2 11 11 C 1.53114 * 109.50629 * 299.99978 * 9 7 2 12 12 C 1.53114 * 109.16592 * 182.40388 * 11 9 7 13 13 C 1.53041 * 109.27703 * 57.65279 * 12 11 9 14 14 N 1.46849 * 109.52149 * 300.82529 * 13 12 11 15 15 C 1.46905 * 110.99658 * 185.83689 * 14 13 12 16 16 C 1.50704 * 109.46843 * 66.04779 * 15 14 13 17 17 C 1.33635 * 126.03759 * 90.02457 * 16 15 14 18 18 N 1.31780 * 114.49885 * 179.76428 * 17 16 15 19 19 C 1.29026 * 117.12791 * 0.23267 * 18 17 16 20 20 C 1.50706 * 124.92105 * 179.97438 * 19 18 17 21 21 H 1.08995 * 109.86649 * 164.32282 * 20 19 18 22 22 C 1.54101 * 109.87522 * 285.33307 * 20 19 18 23 23 C 1.54805 * 104.18712 * 121.45259 * 22 20 19 24 24 C 1.55001 * 102.09529 * 20.87949 * 23 22 20 25 25 O 1.43748 * 109.87543 * 43.31640 * 20 19 18 26 26 S 1.70979 * 110.16596 * 359.97438 * 19 18 17 27 27 C 1.46841 * 111.20209 * 61.74173 * 14 13 12 28 28 H 0.96992 * 119.99844 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.52449 * 62.49870 * 11 9 7 30 30 H 1.09001 * 109.57750 * 302.34175 * 11 9 7 31 31 H 1.09009 * 109.50356 * 297.71811 * 12 11 9 32 32 H 1.08997 * 109.51062 * 177.59338 * 12 11 9 33 33 H 1.08999 * 109.46079 * 180.81107 * 13 12 11 34 34 H 1.09000 * 109.45440 * 60.83354 * 13 12 11 35 35 H 1.08999 * 109.47235 * 306.04868 * 15 14 13 36 36 H 1.09002 * 109.46983 * 186.04335 * 15 14 13 37 37 H 1.08002 * 122.75368 * 0.03874 * 17 16 15 38 38 H 1.08998 * 110.48116 * 240.12827 * 22 20 19 39 39 H 1.08995 * 110.49148 * 2.64328 * 22 20 19 40 40 H 1.09003 * 110.90585 * 139.07259 * 23 22 20 41 41 H 1.09003 * 110.90759 * 262.67947 * 23 22 20 42 42 H 1.09000 * 110.62125 * 81.47467 * 24 23 22 43 43 H 1.08999 * 110.62103 * 204.32158 * 24 23 22 44 44 H 1.09005 * 109.45951 * 58.26998 * 27 14 13 45 45 H 1.08996 * 109.46734 * 178.23630 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8764 -0.6820 0.8894 11 6 4.0223 -0.4721 -1.2511 12 6 5.5522 -0.5289 -1.2745 13 6 6.0041 -1.9907 -1.2430 14 7 5.4908 -2.6369 -0.0283 15 6 6.0189 -4.0013 0.1053 16 6 7.5077 -3.9437 0.3316 17 6 8.1206 -3.8729 1.5170 18 7 9.4363 -3.8384 1.4507 19 6 9.9673 -3.8714 0.2752 20 6 11.4479 -3.8404 -0.0038 21 1 11.6381 -4.1545 -1.0301 22 6 11.9931 -2.4163 0.2181 23 6 13.0824 -2.5919 1.3040 24 6 13.4163 -4.1011 1.1880 25 8 12.1357 -4.7117 0.9095 26 16 8.7477 -3.9556 -0.9202 27 6 4.0226 -2.6365 -0.0065 28 1 -0.4849 0.8400 0.0004 29 1 3.6968 0.5680 -1.2296 30 1 3.6261 -0.9595 -2.1419 31 1 5.9492 -0.0065 -0.4039 32 1 5.9203 -0.0538 -2.1838 33 1 7.0932 -2.0343 -1.2450 34 1 5.6182 -2.5090 -2.1208 35 1 5.8113 -4.5621 -0.8059 36 1 5.5415 -4.4943 0.9522 37 1 7.5821 -3.8505 2.4529 38 1 12.4304 -2.0277 -0.7016 39 1 11.2018 -1.7556 0.5720 40 1 13.9572 -1.9817 1.0797 41 1 12.6880 -2.3557 2.2924 42 1 14.1106 -4.2786 0.3667 43 1 13.8279 -4.4763 2.1249 44 1 3.6461 -3.1519 -0.8902 45 1 3.6725 -3.1493 0.8893 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:45 Heat of formation + Delta-G solvation = 4.081469 kcal Electronic energy + Delta-G solvation = -24905.040940 eV Core-core repulsion = 21435.169114 eV Total energy + Delta-G solvation = -3469.871826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.27971 -39.18099 -38.37466 -34.38922 -32.59890 -32.32578 -31.35554 -30.35069 -29.29815 -26.16771 -25.00010 -24.54894 -22.96155 -22.23787 -21.82204 -21.25153 -19.22682 -18.94049 -18.30291 -16.76753 -16.67201 -16.31973 -15.81084 -15.42064 -15.04003 -14.56375 -14.30951 -14.08730 -13.95708 -13.80487 -13.64935 -13.51077 -13.04791 -12.61912 -12.44639 -12.17866 -12.11739 -12.06003 -11.78785 -11.60938 -11.17596 -11.15444 -11.12906 -11.05743 -10.58553 -10.20481 -10.11622 -10.00534 -9.75533 -9.62844 -9.25636 -9.21137 -8.97523 -8.78678 -8.52770 -7.93817 -6.08250 -4.07610 0.59178 1.17416 1.64419 2.77277 3.27492 3.39240 3.42419 3.59693 3.86438 4.27424 4.33524 4.41453 4.44698 4.52769 4.71122 4.83704 4.90029 5.11512 5.17793 5.22986 5.27889 5.34694 5.39043 5.41985 5.47719 5.60688 5.62182 5.72969 5.77040 5.80156 5.93691 6.09523 6.15253 6.22553 6.26559 6.42074 6.45411 6.56278 6.75201 6.80228 7.15687 7.32590 7.46161 7.61482 7.71174 7.82574 8.50073 8.94639 9.54491 11.04921 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026327 B = 0.002765 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.296847 B =10125.890745 C =10531.547454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.036 0.964 11 C -0.123 4.123 12 C -0.118 4.118 13 C 0.057 3.943 14 N -0.536 5.536 15 C 0.128 3.872 16 C -0.191 4.191 17 C 0.046 3.954 18 N -0.447 5.447 19 C 0.028 3.972 20 C 0.160 3.840 21 H 0.087 0.913 22 C -0.143 4.143 23 C -0.151 4.151 24 C 0.045 3.955 25 O -0.355 6.355 26 S 0.121 5.879 27 C 0.078 3.922 28 H 0.264 0.736 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.178 0.822 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.029 0.971 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.005 -7.304 -2.050 27.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.091 0.909 9 C 0.002 3.998 10 H 0.054 0.946 11 C -0.160 4.160 12 C -0.156 4.156 13 C -0.071 4.071 14 N -0.261 5.261 15 C -0.002 4.002 16 C -0.313 4.313 17 C -0.105 4.105 18 N -0.161 5.161 19 C -0.250 4.250 20 C 0.099 3.901 21 H 0.105 0.895 22 C -0.183 4.183 23 C -0.188 4.188 24 C -0.031 4.031 25 O -0.273 6.273 26 S 0.376 5.624 27 C -0.049 4.049 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.195 0.805 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.047 0.953 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 26.268 -7.163 -2.190 27.315 hybrid contribution -0.381 0.743 -0.040 0.836 sum 25.887 -6.419 -2.230 26.764 Atomic orbital electron populations 1.69895 1.06299 1.26962 1.50825 1.24979 0.94661 0.99038 0.94385 0.86834 0.80032 0.83496 0.77844 1.20731 1.22612 1.18816 1.20981 0.88687 0.94510 1.51107 0.90905 1.19156 0.95974 0.90917 0.93762 0.94585 1.22037 0.92522 1.00333 1.01149 1.21636 0.98152 0.94925 1.00862 1.22121 0.98781 0.95797 0.90384 1.62054 1.10594 1.15201 1.38250 1.20463 0.86352 0.91616 1.01788 1.26007 1.00434 1.09953 0.94866 1.21744 0.88022 1.01963 0.98812 1.66171 1.11395 1.13905 1.24590 1.26782 1.00190 1.06239 0.91811 1.21097 0.84213 0.91027 0.93810 0.89484 1.22974 0.99309 0.95887 1.00083 1.23106 0.98656 0.96886 1.00197 1.23630 0.86070 0.92070 1.01371 1.89041 1.29078 1.44277 1.64926 1.83893 0.97782 1.68312 1.12443 1.22128 0.82709 1.00022 1.00023 0.92665 0.93476 0.92498 0.91851 0.92727 0.91862 0.95238 0.93793 0.88399 0.80487 0.89856 0.89767 0.89965 0.89996 0.91958 0.88644 0.95277 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 22.03 24.35 -169.99 -4.14 17.89 16 4 H -0.28 -6.77 6.89 56.52 0.39 -6.38 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 7 C -0.51 -14.18 9.15 -34.44 -0.31 -14.50 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 10 H 0.04 0.88 7.21 -51.93 -0.37 0.51 16 11 C -0.12 -2.62 4.73 -26.61 -0.13 -2.75 16 12 C -0.12 -2.08 6.09 -26.65 -0.16 -2.24 16 13 C 0.06 0.92 5.30 -3.83 -0.02 0.90 16 14 N -0.54 -8.98 4.65 -236.11 -1.10 -10.07 16 15 C 0.13 1.76 5.50 -4.97 -0.03 1.73 16 16 C -0.19 -2.52 5.32 -35.92 -0.19 -2.72 16 17 C 0.05 0.62 11.25 -19.19 -0.22 0.41 16 18 N -0.45 -6.36 10.52 -11.86 -0.12 -6.48 16 19 C 0.03 0.35 6.08 -13.45 -0.08 0.26 16 20 C 0.16 1.59 3.93 -27.31 -0.11 1.49 16 21 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 22 C -0.14 -1.15 6.63 -25.21 -0.17 -1.32 16 23 C -0.15 -1.05 7.16 -24.72 -0.18 -1.22 16 24 C 0.05 0.33 7.72 38.21 0.30 0.63 16 25 O -0.35 -4.02 11.17 -35.23 -0.39 -4.41 16 26 S 0.12 1.40 21.65 -107.50 -2.33 -0.93 16 27 C 0.08 1.51 4.68 -3.84 -0.02 1.49 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.05 1.07 3.34 -51.93 -0.17 0.90 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.92 5.75 -51.93 -0.30 0.62 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.58 8.12 -51.93 -0.42 0.15 16 36 H 0.10 1.24 7.98 -51.93 -0.41 0.82 16 37 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.81 7.69 -51.93 -0.40 0.41 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 1.34 8.01 -51.93 -0.42 0.93 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -31.78 359.69 -10.64 -42.42 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.17 Total: -1.56 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.58 Total: -15.59 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.45 Total: -43.24 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.39 Total: -4.41 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.33 Total: -0.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.78 -10.64 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.498 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds