Wall clock time and date at job start Sat Apr 11 2020 00:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09008 * 109.50047 * 60.35896 * 9 7 2 11 11 C 1.53116 * 109.50633 * 300.28045 * 9 7 2 12 12 C 1.53127 * 109.16202 * 182.40391 * 11 9 7 13 13 C 1.53038 * 109.27743 * 57.65342 * 12 11 9 14 14 N 1.46850 * 109.52454 * 300.82299 * 13 12 11 15 15 C 1.46897 * 111.00218 * 185.83981 * 14 13 12 16 16 C 1.50700 * 109.46916 * 66.04490 * 15 14 13 17 17 C 1.33637 * 126.04192 * 89.69545 * 16 15 14 18 18 N 1.31780 * 114.50337 * 179.78484 * 17 16 15 19 19 C 1.29022 * 117.12391 * 0.52547 * 18 17 16 20 20 C 1.50703 * 124.91632 * 179.68095 * 19 18 17 21 21 H 1.08999 * 110.33184 * 195.73835 * 20 19 18 22 22 C 1.54475 * 110.37305 * 73.48299 * 20 19 18 23 23 C 1.54512 * 104.06242 * 217.18929 * 22 20 19 24 24 C 1.54476 * 104.06283 * 0.02562 * 23 22 20 25 25 O 1.44424 * 110.36941 * 317.98531 * 20 19 18 26 26 S 1.70981 * 110.16819 * 359.70906 * 19 18 17 27 27 C 1.46842 * 111.19886 * 61.73895 * 14 13 12 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.52469 * 302.30911 * 11 9 7 30 30 H 1.08996 * 109.52149 * 62.50030 * 11 9 7 31 31 H 1.08994 * 109.50318 * 177.59839 * 12 11 9 32 32 H 1.08999 * 109.49792 * 297.67592 * 12 11 9 33 33 H 1.08996 * 109.46008 * 60.83529 * 13 12 11 34 34 H 1.08996 * 109.46333 * 180.80862 * 13 12 11 35 35 H 1.08997 * 109.47242 * 186.04669 * 15 14 13 36 36 H 1.09002 * 109.46791 * 306.04790 * 15 14 13 37 37 H 1.08002 * 122.74636 * 359.97210 * 17 16 15 38 38 H 1.08998 * 110.51453 * 335.83588 * 22 20 19 39 39 H 1.09001 * 110.51098 * 98.41332 * 22 20 19 40 40 H 1.08997 * 110.50962 * 118.64743 * 23 22 20 41 41 H 1.08999 * 110.51221 * 241.35383 * 23 22 20 42 42 H 1.08994 * 110.37475 * 142.80923 * 24 23 22 43 43 H 1.09003 * 110.37064 * 265.14602 * 24 23 22 44 44 H 1.09004 * 109.46518 * 178.23974 * 27 14 13 45 45 H 1.09008 * 109.46263 * 58.27694 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6253 -2.5619 -0.8849 11 6 0.3706 -2.5754 1.2557 12 6 -0.3450 -3.9289 1.2846 13 6 0.6952 -5.0511 1.2576 14 7 1.5114 -4.9346 0.0424 15 6 2.4289 -6.0744 -0.0868 16 6 1.6347 -7.3360 -0.3080 17 6 1.2616 -7.8329 -1.4911 18 7 0.5749 -8.9555 -1.4203 19 6 0.3391 -9.4275 -0.2429 20 6 -0.4322 -10.6906 0.0414 21 1 -0.7291 -10.7252 1.0896 22 6 0.4153 -11.9309 -0.3187 23 6 -0.6091 -12.9285 -0.9041 24 6 -1.9542 -12.1727 -0.8289 25 8 -1.5936 -10.7736 -0.8131 26 16 1.0276 -8.4122 0.9481 27 6 2.2450 -3.6628 0.0154 28 1 -0.4850 0.8400 0.0004 29 1 0.9918 -2.4728 2.1455 30 1 -0.3673 -1.7737 1.2310 31 1 -0.9404 -4.0063 2.1942 32 1 -0.9964 -4.0146 0.4148 33 1 1.3370 -4.9725 2.1350 34 1 0.1885 -6.0161 1.2635 35 1 3.0945 -5.9108 -0.9343 36 1 3.0185 -6.1714 0.8248 37 1 1.5056 -7.3554 -2.4285 38 1 1.1685 -11.6755 -1.0641 39 1 0.8866 -12.3436 0.5733 40 1 -0.3623 -13.1663 -1.9388 41 1 -0.6461 -13.8358 -0.3011 42 1 -2.5654 -12.3981 -1.7028 43 1 -2.4865 -12.4354 0.0854 44 1 2.8640 -3.6195 -0.8807 45 1 2.8796 -3.5908 0.8988 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:48 Heat of formation + Delta-G solvation = -3.194482 kcal Electronic energy + Delta-G solvation = -24709.479897 eV Core-core repulsion = 21239.292562 eV Total energy + Delta-G solvation = -3470.187335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19287 -39.11627 -38.12951 -34.20255 -32.53767 -32.23817 -31.15923 -29.95457 -29.00018 -26.03156 -24.98367 -24.42582 -22.90619 -21.91212 -21.67468 -21.33543 -19.16985 -18.66165 -18.24988 -16.52348 -16.44867 -16.23774 -15.49910 -15.30297 -14.96393 -14.55641 -14.24022 -14.08875 -13.91926 -13.76440 -13.32434 -13.25654 -12.72529 -12.44823 -12.19674 -12.11098 -11.97727 -11.82339 -11.64292 -11.60837 -11.06145 -11.03655 -10.95786 -10.71401 -10.66571 -10.17812 -10.15965 -9.86406 -9.61880 -9.48237 -9.19003 -9.14621 -8.74837 -8.69611 -8.30628 -7.75398 -5.97438 -4.04062 0.64044 1.24420 1.70424 2.83032 3.30824 3.37689 3.40141 3.66532 3.92138 4.32490 4.38576 4.48765 4.56417 4.57433 4.73338 4.89877 4.95091 5.14798 5.22655 5.30323 5.32538 5.37066 5.45116 5.60914 5.61615 5.71096 5.72108 5.75336 5.90887 6.04566 6.20928 6.23092 6.35423 6.46071 6.47465 6.69668 6.73240 6.92854 7.20131 7.35929 7.58865 7.70511 7.76772 7.77501 8.07167 8.17137 8.46620 8.99895 9.60321 11.08462 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.034183 B = 0.002452 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.923678 B =11417.840517 C =11622.044285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.058 3.942 14 N -0.532 5.532 15 C 0.127 3.873 16 C -0.188 4.188 17 C 0.044 3.956 18 N -0.445 5.445 19 C 0.029 3.971 20 C 0.157 3.843 21 H 0.088 0.912 22 C -0.142 4.142 23 C -0.152 4.152 24 C 0.042 3.958 25 O -0.350 6.350 26 S 0.124 5.876 27 C 0.069 3.931 28 H 0.260 0.740 29 H 0.030 0.970 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.041 0.959 37 H 0.178 0.822 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.550 -24.872 2.460 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.070 4.070 14 N -0.257 5.257 15 C -0.003 4.003 16 C -0.309 4.309 17 C -0.107 4.107 18 N -0.159 5.159 19 C -0.249 4.249 20 C 0.096 3.904 21 H 0.106 0.894 22 C -0.181 4.181 23 C -0.190 4.190 24 C -0.035 4.035 25 O -0.268 6.268 26 S 0.378 5.622 27 C -0.058 4.058 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.195 0.805 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.189 -24.879 2.578 25.013 hybrid contribution 1.245 1.207 -0.008 1.734 sum 1.056 -23.672 2.570 23.834 Atomic orbital electron populations 1.69888 1.05846 1.26358 1.50534 1.24934 0.94826 0.98965 0.95118 0.86624 0.79813 0.83624 0.78082 1.20691 1.21282 1.20038 1.21127 0.92806 0.90605 1.50857 0.92812 1.18667 0.92581 0.90142 0.94956 0.94675 1.21665 1.00081 0.94710 0.98432 1.21661 0.97112 0.96297 1.00306 1.22157 0.95848 0.99144 0.89871 1.62052 1.23593 1.01605 1.38474 1.20472 0.92473 0.85908 1.01479 1.26030 1.07901 1.02191 0.94816 1.21733 0.97890 0.92144 0.98902 1.66166 1.13448 1.11796 1.24477 1.26494 1.04933 1.01644 0.91824 1.21297 0.85281 0.89114 0.94710 0.89446 1.22970 0.98898 0.94000 1.02227 1.22926 0.94864 0.98679 1.02521 1.23470 0.96555 0.81232 1.02259 1.89322 1.44419 1.24727 1.68342 1.83876 1.49218 1.16748 1.12312 1.22355 0.96535 0.87922 0.98972 0.93024 0.95146 0.88988 0.93459 0.92077 0.95801 0.92350 0.88664 0.94087 0.80457 0.89854 0.89959 0.90312 0.90291 0.88688 0.92040 0.91970 0.96058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 11.34 55.43 0.63 -24.72 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.99 8.57 -34.44 -0.30 -14.29 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.38 2.27 -91.69 -0.21 1.17 16 10 H 0.04 0.98 8.14 -51.92 -0.42 0.55 16 11 C -0.11 -2.63 5.02 -26.61 -0.13 -2.76 16 12 C -0.12 -2.32 6.09 -26.65 -0.16 -2.49 16 13 C 0.06 1.04 5.30 -3.83 -0.02 1.02 16 14 N -0.53 -9.74 4.65 -236.11 -1.10 -10.84 16 15 C 0.13 1.87 5.50 -4.98 -0.03 1.84 16 16 C -0.19 -2.65 5.32 -35.92 -0.19 -2.84 16 17 C 0.04 0.64 11.25 -19.19 -0.22 0.43 16 18 N -0.44 -6.70 10.52 -11.86 -0.12 -6.82 16 19 C 0.03 0.38 6.24 -13.46 -0.08 0.30 16 20 C 0.16 1.66 3.80 -27.11 -0.10 1.56 16 21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.14 -1.14 6.62 -25.16 -0.17 -1.31 16 23 C -0.15 -1.00 7.09 -25.16 -0.18 -1.17 16 24 C 0.04 0.33 7.63 37.93 0.29 0.62 16 25 O -0.35 -4.35 11.32 -35.23 -0.40 -4.74 16 26 S 0.12 1.52 21.66 -107.50 -2.33 -0.81 16 27 C 0.07 1.42 4.68 -3.84 -0.02 1.40 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.44 6.14 -51.93 -0.32 2.13 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.97 5.76 -51.93 -0.30 0.67 16 35 H 0.10 1.28 7.98 -51.93 -0.41 0.87 16 36 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.08 0.79 7.86 -51.93 -0.41 0.38 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 1.25 8.01 -51.93 -0.42 0.83 16 45 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 LS Contribution 366.71 15.07 5.53 5.53 Total: -1.00 -30.60 366.71 -11.74 -42.34 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.32 Total: -1.22 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -1.61 Total: -14.88 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.59 Total: -42.38 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.40 Total: -4.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.33 Total: -0.81 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.60 -11.74 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.141 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds