Wall clock time and date at job start Sat Apr 11 2020 00:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 119.99956 * 2 1 4 4 H 1.48503 * 109.47277 * 240.00502 * 3 2 1 5 5 H 1.48494 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47447 * 120.00694 * 3 2 1 7 7 C 1.37883 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99757 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.53340 * 300.10016 * 9 7 2 11 11 C 1.53107 * 109.50660 * 60.20331 * 9 7 2 12 12 C 1.53119 * 109.16373 * 177.59317 * 11 9 7 13 13 C 1.53035 * 109.27951 * 302.34501 * 12 11 9 14 14 N 1.46849 * 109.52124 * 59.17877 * 13 12 11 15 15 C 1.46896 * 110.99696 * 174.16438 * 14 13 12 16 16 C 1.50703 * 109.47098 * 294.20471 * 15 14 13 17 17 C 1.33643 * 126.03398 * 89.69296 * 16 15 14 18 18 N 1.31785 * 114.49774 * 180.26100 * 17 16 15 19 19 C 1.29023 * 117.12342 * 0.02562 * 18 17 16 20 20 C 1.50705 * 124.91281 * 179.97438 * 19 18 17 21 21 H 1.08999 * 110.27347 * 165.67990 * 20 19 18 22 22 C 1.54947 * 110.30663 * 287.87040 * 20 19 18 23 23 C 1.55311 * 100.93806 * 155.36147 * 22 20 19 24 24 C 1.54386 * 102.25450 * 325.86954 * 23 22 20 25 25 O 1.43238 * 107.58588 * 21.35348 * 24 23 22 26 26 S 1.70974 * 110.17232 * 359.97438 * 19 18 17 27 27 C 1.46856 * 111.19607 * 298.25764 * 14 13 12 28 28 H 0.97002 * 120.00535 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.52292 * 297.50173 * 11 9 7 30 30 H 1.08998 * 109.52654 * 57.62358 * 11 9 7 31 31 H 1.08998 * 109.50130 * 62.29142 * 12 11 9 32 32 H 1.09006 * 109.50298 * 182.36115 * 12 11 9 33 33 H 1.09004 * 109.45937 * 299.16173 * 13 12 11 34 34 H 1.08996 * 109.46374 * 179.19671 * 13 12 11 35 35 H 1.09006 * 109.47245 * 174.20978 * 15 14 13 36 36 H 1.08998 * 109.47847 * 54.21186 * 15 14 13 37 37 H 1.07999 * 122.74895 * 0.24475 * 17 16 15 38 38 H 1.08996 * 111.12655 * 273.27620 * 22 20 19 39 39 H 1.08996 * 111.12461 * 37.44512 * 22 20 19 40 40 H 1.09004 * 110.84656 * 207.67802 * 23 22 20 41 41 H 1.09004 * 110.84899 * 84.06053 * 23 22 20 42 42 H 1.08999 * 109.82566 * 261.84510 * 24 23 22 43 43 H 1.08993 * 109.90634 * 140.91123 * 24 23 22 44 44 H 1.09002 * 109.45998 * 181.75979 * 27 14 13 45 45 H 1.08994 * 109.46332 * 301.72551 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5574 0.8885 11 6 0.3738 -2.5831 -1.2526 12 6 -0.3418 -3.9365 -1.2752 13 6 0.6982 -5.0586 -1.2388 14 7 1.5112 -4.9348 -0.0222 15 6 2.4284 -6.0739 0.1161 16 6 1.6333 -7.3351 0.3365 17 6 1.1740 -8.1516 -0.6166 18 7 0.4991 -9.1906 -0.1675 19 6 0.3631 -9.2956 1.1112 20 6 -0.3726 -10.4088 1.8118 21 1 -0.1327 -10.4095 2.8750 22 6 -1.9006 -10.2580 1.6033 23 6 -2.3703 -11.7261 1.7938 24 6 -1.1887 -12.5271 1.2057 25 8 -0.0370 -11.6757 1.2239 26 16 1.1385 -7.9894 1.8959 27 6 2.2449 -3.6629 -0.0010 28 1 -0.4851 0.8400 0.0004 29 1 -0.3642 -1.7810 -1.2347 30 1 0.9971 -2.4847 -2.1414 31 1 -0.9950 -4.0173 -0.4064 32 1 -0.9355 -4.0191 -2.1857 33 1 1.3423 -4.9854 -2.1151 34 1 0.1915 -6.0236 -1.2404 35 1 3.0888 -5.9074 0.9672 36 1 3.0236 -6.1736 -0.7915 37 1 1.3420 -7.9742 -1.6686 38 1 -2.3376 -9.6047 2.3584 39 1 -2.1266 -9.9005 0.5987 40 1 -3.2853 -11.9165 1.2329 41 1 -2.5068 -11.9557 2.8506 42 1 -1.4150 -12.8211 0.1808 43 1 -1.0029 -13.4135 1.8121 44 1 2.8615 -3.6142 0.8965 45 1 2.8817 -3.5962 -0.8830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:44:54 Heat of formation + Delta-G solvation = -4.736515 kcal Electronic energy + Delta-G solvation = -24743.379624 eV Core-core repulsion = 21273.125421 eV Total energy + Delta-G solvation = -3470.254202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21359 -39.17222 -38.07296 -34.21246 -32.54177 -32.24022 -31.20661 -29.96070 -28.98617 -26.13413 -24.97146 -24.37441 -22.55093 -21.97967 -21.87726 -21.27201 -19.26542 -18.61225 -18.23945 -16.67763 -16.46720 -16.22874 -15.48605 -15.26600 -14.76580 -14.61869 -14.29689 -14.21542 -13.72524 -13.54481 -13.44274 -13.22653 -12.79077 -12.39119 -12.23958 -12.07302 -11.96657 -11.78472 -11.67309 -11.62561 -11.22542 -11.02749 -10.94046 -10.72469 -10.70102 -10.14760 -9.95121 -9.85957 -9.55915 -9.49412 -9.28164 -9.02136 -8.76928 -8.73380 -8.31697 -7.76178 -5.98730 -4.05234 0.67992 1.29483 1.78799 2.79651 3.31217 3.36204 3.38360 3.61822 3.91787 4.26960 4.37503 4.51714 4.55306 4.59419 4.76441 4.89805 4.97571 5.19703 5.22341 5.31343 5.36908 5.39425 5.48394 5.56987 5.59178 5.70595 5.76576 5.81204 5.87376 6.05444 6.18636 6.22513 6.35090 6.46858 6.66279 6.69137 6.72053 6.91742 7.18870 7.34930 7.58387 7.69657 7.75556 7.77667 8.05727 8.15435 8.45530 8.98496 9.59101 11.07238 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.029561 B = 0.002504 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.956832 B =11178.171136 C =11370.388294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.125 3.875 16 C -0.187 4.187 17 C 0.028 3.972 18 N -0.448 5.448 19 C 0.017 3.983 20 C 0.164 3.836 21 H 0.091 0.909 22 C -0.143 4.143 23 C -0.154 4.154 24 C 0.051 3.949 25 O -0.363 6.363 26 S 0.156 5.844 27 C 0.068 3.932 28 H 0.260 0.740 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.024 0.976 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.172 0.828 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -21.873 3.500 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.068 4.068 14 N -0.258 5.258 15 C -0.005 4.005 16 C -0.309 4.309 17 C -0.124 4.124 18 N -0.162 5.162 19 C -0.260 4.260 20 C 0.103 3.897 21 H 0.108 0.892 22 C -0.182 4.182 23 C -0.192 4.192 24 C -0.026 4.026 25 O -0.281 6.281 26 S 0.412 5.588 27 C -0.058 4.058 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.189 0.811 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.927 -21.922 4.537 22.577 hybrid contribution 0.954 1.131 -1.681 2.239 sum -1.973 -20.791 2.856 21.079 Atomic orbital electron populations 1.69877 1.05851 1.26477 1.50461 1.24930 0.94825 0.98950 0.95091 0.86685 0.79613 0.83277 0.78556 1.20379 1.21320 1.20295 1.21095 0.92777 0.90624 1.50986 0.92870 1.18651 0.92564 0.90122 0.94898 0.94737 1.21659 1.00054 0.94704 0.98478 1.21658 0.97146 0.96384 1.00184 1.22105 0.95762 0.99127 0.89819 1.62054 1.23732 1.01560 1.38497 1.20444 0.92503 0.86138 1.01435 1.26034 1.07202 1.03014 0.94634 1.21689 0.98910 0.90806 1.01031 1.66133 1.15979 1.21503 1.12612 1.26725 1.04944 1.01266 0.93098 1.21276 0.92799 0.80899 0.94697 0.89152 1.23313 0.93174 0.97334 1.04391 1.23135 0.99264 0.94565 1.02243 1.23147 0.84911 0.93335 1.01182 1.88514 1.33182 1.23612 1.82835 1.83900 1.47506 1.17429 1.09996 1.22356 0.96542 0.87984 0.98964 0.92972 0.89097 0.95116 0.92202 0.93522 0.95742 0.92181 0.89697 0.92975 0.81135 0.89213 0.89338 0.89612 0.90236 0.91105 0.91193 0.92098 0.95997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 11.36 55.43 0.63 -24.52 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.93 8.56 -34.44 -0.29 -14.23 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.39 2.26 -91.70 -0.21 1.18 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.44 16 13 C 0.06 1.05 5.26 -3.83 -0.02 1.03 16 14 N -0.53 -9.58 4.65 -236.11 -1.10 -10.68 16 15 C 0.12 1.84 5.50 -4.98 -0.03 1.81 16 16 C -0.19 -2.62 5.51 -35.92 -0.20 -2.82 16 17 C 0.03 0.39 9.69 -19.18 -0.19 0.20 16 18 N -0.45 -6.61 10.53 -11.86 -0.12 -6.74 16 19 C 0.02 0.23 6.33 -13.46 -0.09 0.14 16 20 C 0.16 1.74 3.96 -26.85 -0.11 1.64 16 21 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 22 C -0.14 -1.24 6.56 -24.48 -0.16 -1.40 16 23 C -0.15 -1.01 7.02 -24.78 -0.17 -1.18 16 24 C 0.05 0.42 7.79 37.88 0.30 0.71 16 25 O -0.36 -4.33 11.01 -35.23 -0.39 -4.72 16 26 S 0.16 1.97 23.18 -107.50 -2.49 -0.52 16 27 C 0.07 1.40 4.68 -3.83 -0.02 1.38 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.98 5.96 -51.93 -0.31 0.67 16 35 H 0.08 1.18 7.99 -51.93 -0.41 0.76 16 36 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 37 H 0.17 2.16 8.04 -52.49 -0.42 1.74 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.22 8.02 -51.93 -0.42 0.81 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 367.24 15.07 5.53 5.53 Total: -1.00 -29.96 367.24 -11.87 -41.82 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.34 Total: -1.17 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -1.57 Total: -15.06 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.59 Total: -41.94 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.39 Total: -4.72 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.49 Total: -0.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.96 -11.87 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.088 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds