Wall clock time and date at job start Sat Apr 11 2020 00:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99969 * 2 1 4 4 H 1.48497 * 109.46885 * 269.99842 * 3 2 1 5 5 H 1.48495 * 109.46980 * 29.99590 * 3 2 1 6 6 H 1.48502 * 109.47021 * 149.99733 * 3 2 1 7 7 C 1.37873 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00474 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99806 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46918 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.46832 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99950 * 179.97438 * 11 10 9 13 13 O 1.21555 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.47870 * 120.00217 * 179.97438 * 12 11 10 15 15 C 1.39585 * 120.09306 * 359.97438 * 14 12 11 16 16 C 1.38226 * 119.97664 * 180.02562 * 15 14 12 17 17 F 1.35103 * 119.91732 * 179.97438 * 16 15 14 18 18 C 1.38461 * 120.17509 * 359.72543 * 16 15 14 19 19 C 1.38939 * 120.19250 * 0.54740 * 18 16 15 20 20 N 1.39710 * 119.98851 * 179.72875 * 19 18 16 21 21 C 1.47024 * 110.99189 * 236.04831 * 20 19 18 22 22 C 1.53103 * 109.24985 * 182.34906 * 21 20 19 23 23 O 1.43012 * 109.29295 * 303.21723 * 22 21 20 24 24 C 1.43011 * 113.74271 * 58.65008 * 23 22 21 25 25 C 1.47018 * 110.99728 * 359.72368 * 20 19 18 26 26 C 1.38698 * 120.02287 * 359.45454 * 19 18 16 27 27 H 0.96997 * 119.99771 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46825 * 59.99753 * 9 7 2 29 29 H 1.08997 * 109.46802 * 299.99769 * 9 7 2 30 30 H 1.08997 * 109.47565 * 60.00218 * 10 9 7 31 31 H 1.08997 * 109.47204 * 299.99534 * 10 9 7 32 32 H 0.96995 * 119.99987 * 0.02562 * 11 10 9 33 33 H 1.08001 * 120.02055 * 359.97438 * 15 14 12 34 34 H 1.07994 * 119.90293 * 180.29906 * 18 16 15 35 35 H 1.08998 * 109.47369 * 62.43631 * 21 20 19 36 36 H 1.08998 * 109.54483 * 302.29838 * 21 20 19 37 37 H 1.09002 * 109.50635 * 183.25881 * 22 21 20 38 38 H 1.09003 * 109.50698 * 63.17493 * 22 21 20 39 39 H 1.08997 * 109.50806 * 61.26171 * 24 23 22 40 40 H 1.08997 * 109.50924 * 181.35636 * 24 23 22 41 41 H 1.08994 * 109.50209 * 57.67522 * 25 20 19 42 42 H 1.09003 * 109.54070 * 297.56487 * 25 20 19 43 43 H 1.08001 * 120.08565 * 180.25332 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4865 -2.6366 0.0022 12 6 6.1604 -3.8038 0.0037 13 8 5.5526 -4.8565 0.0046 14 6 7.6391 -3.8038 0.0031 15 6 8.3390 -2.5962 0.0004 16 6 9.7213 -2.5991 -0.0007 17 9 10.3976 -1.4295 -0.0038 18 6 10.4148 -3.7975 0.0065 19 6 9.7253 -5.0037 0.0035 20 7 10.4294 -6.2105 0.0051 21 6 10.0365 -7.0510 -1.1354 22 6 10.7866 -8.3836 -1.0624 23 8 12.1943 -8.1325 -1.0333 24 6 12.6112 -7.3177 0.0655 25 6 11.8804 -5.9738 0.0035 26 6 8.3384 -5.0103 0.0046 27 1 -0.4849 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8752 -0.6805 -0.8888 30 1 3.6586 -3.1510 -0.8875 31 1 3.6579 -3.1498 0.8925 32 1 5.9715 -1.7966 0.0019 33 1 7.8009 -1.6598 -0.0016 34 1 11.4947 -3.7946 0.0105 35 1 10.2883 -6.5420 -2.0658 36 1 8.9628 -7.2354 -1.0997 37 1 10.5425 -8.9871 -1.9367 38 1 10.4934 -8.9174 -0.1584 39 1 12.3709 -7.8197 1.0027 40 1 13.6867 -7.1507 0.0074 41 1 12.1518 -5.3714 0.8703 42 1 12.1630 -5.4476 -0.9084 43 1 7.8014 -5.9474 0.0063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597493752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:00 Heat of formation + Delta-G solvation = -89.380501 kcal Electronic energy + Delta-G solvation = -26319.407048 eV Core-core repulsion = 22279.269231 eV Total energy + Delta-G solvation = -4040.137817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.20492 -41.03776 -39.75632 -38.32366 -35.89563 -35.14866 -32.89897 -32.20472 -31.23943 -30.54136 -29.87288 -27.16401 -25.82793 -24.71827 -23.40374 -22.32502 -21.34207 -20.89050 -20.16547 -18.60567 -17.30146 -16.93506 -16.74834 -16.62640 -16.42267 -16.03681 -16.00350 -15.47563 -15.39771 -15.09773 -15.09696 -14.91187 -14.72944 -14.21041 -13.60339 -13.45998 -13.38854 -12.97707 -12.65014 -12.47385 -12.40787 -12.11619 -11.92055 -11.67651 -11.52148 -11.25819 -11.20116 -10.54406 -10.44856 -10.38180 -10.00835 -9.97425 -9.72552 -9.36141 -9.23196 -8.70334 -8.60850 -8.41476 -6.13760 -4.14279 0.44119 0.79962 2.59902 2.97989 3.23422 3.31357 3.32089 3.32586 3.40113 3.58488 3.83838 4.25173 4.28384 4.35239 4.38977 4.52362 4.60123 4.60975 4.71625 4.73036 4.84508 4.96968 5.03391 5.09950 5.19035 5.20148 5.30368 5.36651 5.45484 5.60436 5.67771 5.90735 6.01965 6.13760 6.18123 6.32287 6.49505 6.58239 6.59784 6.67220 7.06629 7.17618 7.62218 7.73802 8.34233 8.42290 8.90192 9.46094 10.99150 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023229 B = 0.002412 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.119899 B =11605.591991 C =12673.710336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.129 3.871 11 N -0.716 5.716 12 C 0.550 3.450 13 O -0.535 6.535 14 C -0.071 4.071 15 C -0.148 4.148 16 C 0.122 3.878 17 F -0.134 7.134 18 C -0.189 4.189 19 C 0.130 3.870 20 N -0.484 5.484 21 C 0.016 3.984 22 C 0.062 3.938 23 O -0.384 6.384 24 C 0.063 3.937 25 C 0.009 3.991 26 C -0.090 4.090 27 H 0.265 0.735 28 H 0.023 0.977 29 H 0.018 0.982 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.396 0.604 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.059 0.941 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.314 -11.739 -0.833 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.061 4.061 10 C 0.007 3.993 11 N -0.366 5.366 12 C 0.335 3.665 13 O -0.414 6.414 14 C -0.075 4.075 15 C -0.168 4.168 16 C 0.102 3.898 17 F -0.113 7.113 18 C -0.210 4.210 19 C 0.032 3.968 20 N -0.199 5.199 21 C -0.109 4.109 22 C -0.015 4.015 23 O -0.302 6.302 24 C -0.014 4.014 25 C -0.118 4.118 26 C -0.112 4.112 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.231 0.769 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.076 0.924 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 27.738 -12.733 -0.554 30.526 hybrid contribution 0.667 2.272 -0.329 2.390 sum 28.405 -10.461 -0.883 30.283 Atomic orbital electron populations 1.69903 1.06277 1.27092 1.50270 1.25002 0.94778 0.99156 0.94337 0.86758 0.80281 0.83553 0.78531 1.20201 1.21226 1.19066 1.20895 0.88526 0.94935 1.51826 0.90551 1.19812 0.98141 0.91195 0.96938 1.21599 0.75278 1.00424 1.01975 1.46293 1.09502 1.07655 1.73194 1.18064 0.86224 0.84566 0.77603 1.90779 1.69485 1.31097 1.50008 1.19781 0.93876 0.92779 1.01033 1.21283 0.92518 0.99167 1.03869 1.17241 0.89608 0.81121 1.01811 1.91533 1.80147 1.45820 1.93799 1.21330 1.01140 0.90751 1.07826 1.18511 0.92416 0.88315 0.97584 1.59309 1.05783 1.13429 1.41421 1.23042 1.02312 0.94540 0.91007 1.22739 0.80484 0.94957 1.03291 1.88017 1.23205 1.70487 1.48493 1.22708 0.99109 0.89228 0.90370 1.23054 0.86417 0.99344 1.02956 1.20926 0.91557 0.98729 0.99939 0.92512 0.95911 0.96354 0.91573 0.91528 0.76893 0.84034 0.83983 0.92435 0.88166 0.87651 0.91722 0.91850 0.87848 0.88597 0.92293 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.96 55.43 0.77 -26.31 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 7 C -0.52 -14.46 9.66 -34.44 -0.33 -14.79 16 8 H 0.08 2.28 7.99 -52.48 -0.42 1.87 16 9 C -0.02 -0.52 4.16 -27.88 -0.12 -0.63 16 10 C 0.13 2.56 5.61 -4.04 -0.02 2.54 16 11 N -0.72 -11.59 5.51 -61.24 -0.34 -11.93 16 12 C 0.55 8.89 7.77 -12.32 -0.10 8.80 16 13 O -0.54 -10.41 16.34 5.32 0.09 -10.32 16 14 C -0.07 -0.91 5.87 -105.00 -0.62 -1.52 16 15 C -0.15 -1.66 9.51 -39.08 -0.37 -2.03 16 16 C 0.12 1.29 7.29 -39.50 -0.29 1.00 16 17 F -0.13 -1.47 17.26 2.25 0.04 -1.43 16 18 C -0.19 -1.75 8.79 -39.24 -0.34 -2.10 16 19 C 0.13 1.27 5.63 -83.84 -0.47 0.80 16 20 N -0.48 -4.04 4.77 -170.84 -0.81 -4.86 16 21 C 0.02 0.12 5.41 -3.70 -0.02 0.10 16 22 C 0.06 0.40 7.01 37.21 0.26 0.66 16 23 O -0.38 -3.05 10.83 -35.23 -0.38 -3.43 16 24 C 0.06 0.37 7.01 37.21 0.26 0.63 16 25 C 0.01 0.06 4.33 -3.71 -0.02 0.04 16 26 C -0.09 -1.05 8.74 -38.96 -0.34 -1.39 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 29 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.40 5.37 6.50 -40.82 -0.27 5.10 16 33 H 0.14 1.40 6.40 -52.49 -0.34 1.06 16 34 H 0.14 1.03 5.79 -52.49 -0.30 0.72 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.72 6.85 -51.93 -0.36 0.37 16 37 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.52 7.21 -51.93 -0.37 0.14 16 42 H 0.06 0.38 7.54 -51.93 -0.39 -0.01 16 43 H 0.15 1.73 6.78 -52.49 -0.36 1.37 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -32.64 354.29 -8.27 -40.91 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.69 Total: 1.86 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.61 Total: -6.02 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.38 Total: -43.10 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.29 Total: -13.75 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.64 -8.27 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597493752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.470 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds