Wall clock time and date at job start Sat Apr 11 2020 00:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38262 * 119.99577 * 2 1 4 4 C 1.38220 * 119.99188 * 179.97438 * 3 2 1 5 5 C 1.38249 * 120.00138 * 359.75139 * 4 3 2 6 6 C 1.38214 * 120.00316 * 0.50756 * 5 4 3 7 7 C 1.50697 * 120.00029 * 179.76969 * 6 5 4 8 8 H 1.09000 * 115.55138 * 154.05287 * 7 6 5 9 9 C 1.52997 * 117.50210 * 8.34080 * 7 6 5 10 10 C 1.52994 * 60.00058 * 252.51473 * 9 7 6 11 11 H 1.08998 * 117.51925 * 107.48556 * 10 9 7 12 12 C 1.50700 * 117.49481 * 252.50543 * 10 9 7 13 13 O 1.21280 * 120.00085 * 68.62831 * 12 10 9 14 14 N 1.34774 * 120.00252 * 248.34759 * 12 10 9 15 15 C 1.39478 * 120.00162 * 175.59252 * 14 12 10 16 16 C 1.38591 * 119.57821 * 186.38171 * 15 14 12 17 17 C 1.40808 * 118.79512 * 179.97438 * 16 15 14 18 18 C 1.41545 * 121.00125 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00585 * 201.14828 * 18 17 16 20 20 C 1.40028 * 119.99594 * 21.14945 * 18 17 16 21 21 N 1.30747 * 120.00068 * 12.91269 * 20 18 17 22 22 Si 1.86802 * 120.00026 * 192.91340 * 20 18 17 23 23 H 1.48500 * 109.47004 * 89.99851 * 22 20 18 24 24 H 1.48501 * 109.47033 * 209.99780 * 22 20 18 25 25 H 1.48495 * 109.46822 * 330.00142 * 22 20 18 26 26 C 1.41175 * 118.00664 * 359.97438 * 17 16 15 27 27 C 1.37590 * 119.01663 * 359.97438 * 26 17 16 28 28 N 1.32085 * 121.10595 * 359.73507 * 27 26 17 29 29 C 1.38207 * 119.99972 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47139 * 270.02055 * 1 2 3 31 31 H 1.09005 * 109.47068 * 30.02299 * 1 2 3 32 32 H 1.09003 * 109.47196 * 150.01776 * 1 2 3 33 33 H 1.07994 * 120.00510 * 0.02562 * 3 2 1 34 34 H 1.08006 * 119.99140 * 180.02562 * 4 3 2 35 35 H 1.08008 * 119.99763 * 180.27469 * 5 4 3 36 36 H 1.09001 * 117.49722 * 145.02287 * 9 7 6 37 37 H 1.09004 * 117.49576 * 0.02562 * 9 7 6 38 38 H 0.96999 * 119.99864 * 355.59055 * 14 12 10 39 39 H 1.07996 * 120.60547 * 0.02562 * 16 15 14 40 40 H 0.96999 * 119.99994 * 179.97438 * 21 20 18 41 41 H 1.08002 * 120.49369 * 179.97438 * 26 17 16 42 42 H 1.07997 * 119.44880 * 180.02562 * 27 26 17 43 43 H 1.08001 * 120.00205 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0001 0.0063 6 6 3.5806 -1.1969 0.0009 7 6 4.3341 -2.5020 0.0019 8 1 3.8015 -3.3521 0.4281 9 6 5.8493 -2.4428 0.2058 10 6 5.2754 -2.7751 -1.1730 11 1 5.3494 -2.0110 -1.9468 12 6 5.3956 -4.1989 -1.6519 13 8 4.7591 -5.0770 -1.1092 14 7 6.2062 -4.4956 -2.6870 15 6 6.3887 -5.8238 -3.0715 16 6 7.3233 -6.1313 -4.0475 17 6 7.4944 -7.4776 -4.4227 18 6 8.4360 -7.8443 -5.4139 19 1 8.3338 -8.7851 -5.9342 20 6 9.5001 -6.9870 -5.7198 21 7 9.7750 -5.9796 -4.9329 22 14 10.5268 -7.2825 -7.2521 23 1 9.9310 -6.5473 -8.3965 24 1 11.9119 -6.7997 -7.0206 25 1 10.5534 -8.7356 -7.5573 26 6 6.6993 -8.4511 -3.7798 27 6 5.7979 -8.0496 -2.8210 28 7 5.6718 -6.7762 -2.4935 29 6 2.1981 -1.1969 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5136 33 1 1.6583 2.1327 0.0004 34 1 4.1204 2.1327 0.0010 35 1 5.3517 0.0001 0.0112 36 1 6.3137 -3.2540 0.7665 37 1 6.3011 -1.4599 0.3396 38 1 6.6627 -3.7853 -3.1645 39 1 7.9104 -5.3525 -4.5113 40 1 10.5124 -5.3860 -5.1447 41 1 6.7972 -9.4955 -4.0368 42 1 5.1865 -8.7885 -2.3245 43 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599684778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:45:03 Heat of formation + Delta-G solvation = 44.246758 kcal Electronic energy + Delta-G solvation = -25062.450412 eV Core-core repulsion = 21458.876333 eV Total energy + Delta-G solvation = -3603.574080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.23771 -39.34875 -38.02939 -36.29234 -34.31239 -33.71725 -32.67823 -30.99005 -30.52307 -28.71502 -27.08169 -26.03307 -24.63769 -23.58497 -22.26481 -21.94903 -21.12464 -19.87897 -19.36053 -17.69211 -17.39918 -16.77775 -15.82882 -15.48045 -15.21600 -15.05567 -14.57785 -14.26515 -14.17925 -14.04148 -13.92936 -13.69042 -13.28957 -12.93126 -12.63294 -12.55213 -12.44735 -12.39223 -12.17961 -11.93273 -11.46874 -11.39298 -11.21083 -11.06137 -10.92165 -10.70756 -10.44516 -10.28188 -10.11497 -9.76238 -9.42804 -9.36289 -8.89232 -8.63799 -8.01778 -7.74213 -7.02113 -6.77987 -4.64768 1.14293 1.23808 2.50199 2.77307 2.99760 3.03254 3.12508 3.30045 3.46205 3.68259 3.82420 4.07692 4.46323 4.63244 4.66843 4.73647 4.79409 4.91115 4.96127 5.03780 5.16316 5.25847 5.30038 5.37725 5.51846 5.60341 5.65638 5.69229 5.87776 5.89909 5.98013 6.04298 6.05744 6.32040 6.43111 6.52984 6.58401 6.66638 6.80390 6.85888 6.93690 7.14022 7.39481 7.46768 7.78052 7.95411 8.21083 8.42437 8.69387 8.73932 8.90704 9.69520 10.04281 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002371 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.402064 B =11804.695135 C =12515.854954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.115 4.115 5 C -0.126 4.126 6 C -0.043 4.043 7 C -0.087 4.087 8 H 0.127 0.873 9 C -0.145 4.145 10 C -0.172 4.172 11 H 0.122 0.878 12 C 0.527 3.473 13 O -0.482 6.482 14 N -0.653 5.653 15 C 0.335 3.665 16 C -0.246 4.246 17 C 0.138 3.862 18 C -0.449 4.449 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.790 5.790 22 Si 0.915 3.085 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.285 4.285 27 C 0.117 3.883 28 N -0.555 5.555 29 C -0.110 4.110 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.408 0.592 39 H 0.139 0.861 40 H 0.281 0.719 41 H 0.102 0.898 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 15.113 6.845 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.144 4.144 6 C -0.043 4.043 7 C -0.106 4.106 8 H 0.145 0.855 9 C -0.182 4.182 10 C -0.194 4.194 11 H 0.140 0.860 12 C 0.312 3.688 13 O -0.353 6.353 14 N -0.298 5.298 15 C 0.110 3.890 16 C -0.271 4.271 17 C 0.130 3.870 18 C -0.481 4.481 19 H 0.100 0.900 20 C -0.144 4.144 21 N -0.416 5.416 22 Si 0.739 3.261 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.309 4.309 27 C -0.037 4.037 28 N -0.275 5.275 29 C -0.128 4.128 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.243 0.757 39 H 0.156 0.844 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.263 14.942 7.976 19.305 hybrid contribution 1.548 0.078 -1.673 2.281 sum -7.714 15.020 6.303 18.023 Atomic orbital electron populations 1.20798 0.91213 1.02833 1.02298 1.19907 0.96075 0.93064 0.99513 1.21012 0.94307 0.97387 1.01884 1.21087 0.94270 0.97832 1.00062 1.21070 1.00097 0.91897 1.01347 1.19156 0.93312 0.93031 0.98830 1.21073 0.91908 0.96659 1.00945 0.85503 1.23113 0.95247 1.03499 0.96331 1.22389 1.07023 0.96516 0.93452 0.86039 1.19606 0.79948 0.88789 0.80482 1.90769 1.41609 1.48038 1.54834 1.43344 1.46707 1.07037 1.32735 1.18230 0.93495 0.83601 0.93646 1.21802 1.02946 0.98664 1.03691 1.17599 0.89577 0.90255 0.89608 1.19620 1.06844 1.04291 1.17298 0.90006 1.25991 0.97420 0.93887 0.97100 1.69741 1.25333 1.12931 1.33581 0.86194 0.78531 0.80071 0.81268 1.19187 1.20174 1.18492 1.21881 1.05803 0.98822 1.04363 1.21751 0.95806 0.91412 0.94716 1.67208 1.28535 1.00391 1.31318 1.20914 0.93407 0.97831 1.00624 0.91193 0.91625 0.91394 0.86310 0.86101 0.85825 0.87653 0.87590 0.75695 0.84373 0.90754 0.88024 0.85931 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.13 -1.18 9.70 -39.58 -0.38 -1.56 16 4 C -0.11 -1.06 10.05 -39.58 -0.40 -1.45 16 5 C -0.13 -1.29 9.30 -39.59 -0.37 -1.65 16 6 C -0.04 -0.50 5.61 -104.63 -0.59 -1.09 16 7 C -0.09 -1.12 5.55 -91.78 -0.51 -1.63 16 8 H 0.13 1.82 7.67 -51.93 -0.40 1.43 16 9 C -0.14 -1.70 9.56 -26.74 -0.26 -1.96 16 10 C -0.17 -2.38 5.83 -91.78 -0.53 -2.91 16 11 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 12 C 0.53 10.10 7.57 -10.99 -0.08 10.01 16 13 O -0.48 -11.16 14.52 5.56 0.08 -11.08 16 14 N -0.65 -13.04 5.39 -11.49 -0.06 -13.10 16 15 C 0.33 8.22 7.41 -154.70 -1.15 7.08 16 16 C -0.25 -6.27 8.66 -38.48 -0.33 -6.60 16 17 C 0.14 3.64 5.65 -106.55 -0.60 3.04 16 18 C -0.45 -11.52 9.15 -37.65 -0.34 -11.87 16 19 H 0.08 2.01 7.88 -52.49 -0.41 1.59 16 20 C 0.07 1.78 5.30 -17.34 -0.09 1.69 16 21 N -0.79 -19.26 10.54 55.55 0.59 -18.68 16 22 Si 0.92 17.82 29.58 -169.99 -5.03 12.80 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 26 C -0.28 -7.04 9.90 -38.70 -0.38 -7.43 16 27 C 0.12 2.86 11.15 -17.68 -0.20 2.66 16 28 N -0.56 -14.37 7.86 -12.52 -0.10 -14.47 16 29 C -0.11 -1.24 9.39 -39.59 -0.37 -1.61 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.12 1.07 6.02 -52.48 -0.32 0.75 16 36 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.11 0.97 6.17 -51.93 -0.32 0.65 16 38 H 0.41 6.73 8.70 -40.82 -0.36 6.37 16 39 H 0.14 3.49 5.84 -52.49 -0.31 3.19 16 40 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 41 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 42 H 0.12 2.61 8.06 -52.49 -0.42 2.18 16 43 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -31.52 366.32 -11.31 -42.83 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.47 Total: 13.42 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -6.85 Total: -17.25 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.43 Total: -46.25 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.52 -11.31 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599684778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.081 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds